jgi.p|Nanoce1779_2|587109, mRNA_4597 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587109
Unique NamemRNA_4597
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length534
Alignment locationscaffold_9:138217..139138 -

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Properties
Property NameValue
TranscriptId587195
TrackFilteredModels2
ProteinId587109
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:138217..139138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587109gene_4597Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587109mRNA_4597-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4597CDS_4597Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4597 ID=mRNA_4597|Name=jgi.p|Nanoce1779_2|587109|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
ACAGACACAGGAAAACAGCCACCATCGTCTTCACCATCAGCCGTGATCGC
CCCCAGCCCCAAAACCCAAGCGGCATCCCTCCCCGCCTGCCGAACATTAA
TATGTCCACGTCTCCTCCTGCTCCCCCTTTATCTTCCTCTGCCATCTCCT
TCCCACGCTGGGTTGGCCTCCTCCTCTGTTTCATTATCTCCAGCACGGTT
TGGGCCACCCTATACATCGACCCATGGCAGTCCTTTCGTTTCACCGCGCC
CGTGCGCCAAGTACTGCAGACGTTCCCGTTCTGGGCTCTGGTCTCTTTGG
GAGCCTACACCCTCGCAAACATCGGCATTAACCTCATATATTTCAATTCT
TGCCCCGAGGCCGCCGTCGGGCTGGCGAAAGACATAAGAGAAGCGAAGGC
AGATTTGATCCAAAAGGGTTTCAAAATGGATTACTAATTGATTTGAATTA
GAGGGGTCAAAGAGAAGATTAGAGTGCAATTAGGAGGAAACATAGAATGT
AAATGAATCAATTGAAATACTTCCGCGGGTTTAC
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protein sequence of jgi.p|Nanoce1779_2|587109

>mRNA_4597-protein ID=mRNA_4597-protein|Name=jgi.p|Nanoce1779_2|587109|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSTSPPAPPLSSSAISFPRWVGLLLCFIISSTVWATLYIDPWQSFRFTAP
VRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKA
DLIQKGFKMDY*
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mRNA from alignment at scaffold_9:138217..139138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4597 ID=mRNA_4597|Name=jgi.p|Nanoce1779_2|587109|organism=Nannochloropsis oceanica|type=mRNA|length=922bp|location=Sequence derived from alignment at scaffold_9:138217..139138- (Nannochloropsis oceanica)
ACAGACACAGGAAAACAGCCACCATCGTCTTCACCATCAGCCGTGATCGC
CCCCAGCCCCAAAACCCAAGCGGCATCCCTCCCCGCCTGCCGAACATTAA
TATGTCCACGTCTCCTCCTGCTCCCCCTTTATCTTCCTCTGCCATCTCCT
TCCCACGCTGGGTTGGCCTCCTCCTCTGTTTCATTATCTCCAGCACGGTT
TGGGCCACCCTATACATCGACCCATGGCAGTCCTTTCGTTTCACCGCGCC
CGTGCGCCAAGTACTGCAGACGGTAAGCGGGAAAGGAAAAATACAGGAGT
GGGCGGATGGGAGGGAAGCAAGAGGTGGGACAGAGTGTGTTATCTGGATG
GTTCTGTGCCTCGATGCAAGGTAGTCCTGGTAATTCTCTATCCGAGTCCG
CCATGTTAAGGAATCAAGGGAGGAAGGGAGGAAGGAAGGAAGGGAGGGAG
GGAGGGAGGGAGGGAACAAATGTGATGTAATGGATGTAGGCTTGGGGCGA
TGGTGCAGGTGAAAAGCAGGGTGTAATGTAATGTACGATGCATACAACAG
GGTAGCTCCATCCTTGCCCATGTTTCCCCCTATTTTTATGCATACCCACC
ATATTACCCTTCCCTTCCTCCCTCCTCCCTTCCATTCCCCCTTCCCTCTC
CCTCCCTCAGTTCCCGTTCTGGGCTCTGGTCTCTTTGGGAGCCTACACCC
TCGCAAACATCGGCATTAACCTCATATATTTCAATTCTTGCCCCGAGGCC
GCCGTCGGGCTGGCGAAAGACATAAGAGAAGCGAAGGCAGATTTGATCCA
AAAGGGTTTCAAAATGGATTACTAATTGATTTGAATTAGAGGGGTCAAAG
AGAAGATTAGAGTGCAATTAGGAGGAAACATAGAATGTAAATGAATCAAT
TGAAATACTTCCGCGGGTTTAC
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Coding sequence (CDS) from alignment at scaffold_9:138217..139138-

>mRNA_4597 ID=mRNA_4597|Name=jgi.p|Nanoce1779_2|587109|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_9:138217..139138- (Nannochloropsis oceanica)
TTCCCGTTCTGGGCTCTGGTCTCTTTGGGAGCCTACACCCTCGCAAACAT
CGGCATTAACCTCATATATTTCAATTCTTGCCCCGAGGCCGCCGTCGGGC
TGGCGAAAGACATAAGAGAAGCGAAGGCAGATTTGATCCAAAAGGGTTTC
AAAATGGATTACTAAATGTCCACGTCTCCTCCTGCTCCCCCTTTATCTTC
CTCTGCCATCTCCTTCCCACGCTGGGTTGGCCTCCTCCTCTGTTTCATTA
TCTCCAGCACGGTTTGGGCCACCCTATACATCGACCCATGGCAGTCCTTT
CGTTTCACCGCGCCCGTGCGCCAAGTACTGCAGACGTTCCCGTTCTGGGC
TCTGGTCTCTTTGGGAGCCTACACCCTCGCAAACATCGGCATTAACCTCA
TATATTTCAATTCTTGCCCCGAGGCCGCCGTCGGGCTGGCGAAAGACATA
AGAGAAGCGAAGGCAGATTTGATCCAAAAGGGTTTCAAAATGGATTACTA
AATGTCCACGTCTCCTCCTGCTCCCCCTTTATCTTCCTCTGCCATCTCCT
TCCCACGCTGGGTTGGCCTCCTCCTCTGTTTCATTATCTCCAGCACGGTT
TGGGCCACCCTATACATCGACCCATGGCAGTCCTTTCGTTTCACCGCGCC
CGTGCGCCAAGTACTGCAGACG
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Synonyms
Publications