jgi.p|Nanoce1779_2|527668, mRNA_4594 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527668
Unique Name	mRNA_4594
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1086
Alignment location	scaffold_9:124910..126542 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	527754
Track	FilteredModels2
ProteinId	527668

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:124910..126542 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527668	gene_4594	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527668	mRNA_4594-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4594	CDS_4594	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:124910..126542+
coding sequence from alignment at scaffold_9:124910..126542+

mRNA sequence

>mRNA_4594 ID=mRNA_4594|Name=jgi.p|Nanoce1779_2|527668|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGTCCTCCCCCACCGCCTGCCCCCTCCCTCAACTCCACCATGCCGCCCT
TCCTATCGTGGACTTCTCCAATACTGACGAGGCTCCGTCAGTTCTGTATA
AAGCCTGCAAGGAATTTGGTTTTTTTTACCTCGTCAATCACGGCGTGCCC
CAGAGCCTTATCGACGACATGTTGGCCCAGTCCAAGGCCTTCTTTTCCCT
TCCCCTCTCCGCCAAAAAAGAGCTCTCCGCCTCCCTCAACAAAATAAATC
GCGGTTATACGGGCTTTGAAGAAGAGACCCTCGATCCGGCATTGCAGAAA
GGAAAGGGGGACACGAAAGAAGGTTATTATATAGGGAGGGAAGTCCCAGC
GGAGAGCGAGGAGGCCAAGGCGTTTCCTCTGCACGGACCCAACGTCTGGC
CGGCAAAGGAAGTGCTCCCGTTATGGAGAGATACCATGACCTCGTATTTC
GCAGCGCTCTCCTCCCTGGGGCTCCAGACCGTCCACCTTCTCCTTCGCTC
CCTCCATCTTCCCGAAAGCGCTTTTGATGCCAATTTTACGCGCCCCATGG
CCGCCTTGCGATTGTTGCATTACTCACCTCAGGCCTCTAACCCGTCTGAA
GGCATCTTTGCCGCAGGTGCCCACTCGGACTACGGTATGTTCACCTTCCT
GATCACTGACGGGACGCCTGGGCTGCAGGTCTGGAGGGAGGGAGGGAAGG
AGGGAGGGAGGGATGGAGGGGGCATATGGCAGGATGTACCGGCGGTAGAA
GGGGCGTTCATTGTGAATCTAGGCGATATGCTCCAGCGCTGGACCAACGA
TGTGTTTCGATCCACCAAGCACCGGGTACTGATCAAGGGGGGAGGGAGGG
AGGGAGGGAGGGAGGGCGGGCGTTATAGTGCCCCTTTCTTTTATGAGCCG
AATTTTGATACGCTTGTGGAGTGCTTGCCCGGGTTCGAGGGGGAGAAGGG
GGAAAGACGATATGCACCAGTTAAAAGTGGGGAGTATCTACTCGGGAAGT
ACAGACAGACCCACAAGGACTTCGTGGAGGGGAAGCCGAAGCCGAAGCAG
GAGGAGGAGGGGGGAGGAGAGGGAGGGGGGAAATAA

protein sequence of jgi.p|Nanoce1779_2|527668

>mRNA_4594-protein ID=mRNA_4594-protein|Name=jgi.p|Nanoce1779_2|527668|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MSSPTACPLPQLHHAALPIVDFSNTDEAPSVLYKACKEFGFFYLVNHGVP
QSLIDDMLAQSKAFFSLPLSAKKELSASLNKINRGYTGFEEETLDPALQK
GKGDTKEGYYIGREVPAESEEAKAFPLHGPNVWPAKEVLPLWRDTMTSYF
AALSSLGLQTVHLLLRSLHLPESAFDANFTRPMAALRLLHYSPQASNPSE
GIFAAGAHSDYGMFTFLITDGTPGLQVWREGGKEGGRDGGGIWQDVPAVE
GAFIVNLGDMLQRWTNDVFRSTKHRVLIKGGGREGGREGGRYSAPFFYEP
NFDTLVECLPGFEGEKGERRYAPVKSGEYLLGKYRQTHKDFVEGKPKPKQ
EEEGGGEGGGK*

mRNA from alignment at scaffold_9:124910..126542+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4594 ID=mRNA_4594|Name=jgi.p|Nanoce1779_2|527668|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp|location=Sequence derived from alignment at scaffold_9:124910..126542+ (Nannochloropsis oceanica)
ATGTCCTCCCCCACCGCCTGCCCCCTCCCTCAACTCCACCATGCCGCCCT
TCCTATCGTGGACTTCTCCAATACTGACGAGGCTCCGTCAGTTCTGTATA
AAGCCTGCAAGGAATTTGGTTTTTTTTACCTCGTCAATCACGGCGTGCCC
CAGAGCCTTATCGACGACATGTTGGCCCAGTCCAAGGTATTTGCACGAAA
CGGCTAGCCTTTTCGACCTGCCCTCAATTTGTTCCACCCTTTCATTGTCA
TATCAGTTCCATTCCTTCTCTCGTTTATCATCTATCACGCCACTCAAATC
ACCACTCCCTCCCTCCCTCCACTTCCCCCCTCCCCGATTGACCAATCACA
GGCCTTCTTTTCCCTTCCCCTCTCCGCCAAAAAAGAGCTCTCCGCCTCCC
TCAACAAAATAAATCGCGGTTATACGGGCTTTGAAGAAGAGACCCTCGAT
CCGGCATTGCAGAAAGGAAAGGGGGACACGAAAGAAGGTTATTATATAGG
GAGGGAAGTCCCAGCGGAGAGCGAGGAGGCCAAGGCGTTTCCTCTGCACG
GACCCAACGTCTGGCCGGCAAAGGAAGTGCTCCCGTTATGGAGAGGTACA
GAAAAGGGGCGAAAATGAAGAGGGATGGGAACAAAAAGACGGAATTAATG
GGAGAAGAGGATGCCACAAGTGGAAGGGGAAGGGATGACTTACTCACACC
CCTCTCCTTCCTATCGCCAGCTTTCCTCTCGTAAGGAAGGCAAAAAAATC
GCCCATTCAAATCTGACATATGCCTTTCCATTAATCTTTCTCTCGCACCT
TCGCCCTCTTCTCCTCAGATACCATGACCTCGTATTTCGCAGCGCTCTCC
TCCCTGGGGCTCCAGACCGTCCACCTTCTCCTTCGCTCCCTCCATCTTCC
CGAAAGCGCTTTTGATGCCAATTTTACGCGCCCCATGGCCGCCTTGCGAT
TGTTGCATTACTCACCTCAGGTAAAAAGCCCCTTCTCCCTCCCTGCTTCC
CTCCCTCCGTCCCTGCTAAAGTCTTTCAAACGTTTTAGTAAACCATCTGA
CCTGAGCTCTCCTCCTGCTAATAATACCCTTCCCTCCCTCCCTCCCTCTC
TCCTTCCCTTCCTCTCTCCGTCCTATCAGGCCTCTAACCCGTCTGAAGGC
ATCTTTGCCGCAGGTGCCCACTCGGACTACGGTATGTTCACCTTCCTGAT
CACTGACGGGACGCCTGGGCTGCAGGTCTGGAGGGAGGGAGGGAAGGAGG
GAGGGAGGGATGGAGGGGGCATATGGCAGGATGTACCGGCGGTAGAAGGG
GCGTTCATTGTGAATCTAGGCGATATGCTCCAGCGCTGGACCAACGATGT
GTTTCGATCCACCAAGCACCGGGTACTGATCAAGGGGGGAGGGAGGGAGG
GAGGGAGGGAGGGCGGGCGTTATAGTGCCCCTTTCTTTTATGAGCCGAAT
TTTGATACGCTTGTGGAGTGCTTGCCCGGGTTCGAGGGGGAGAAGGGGGA
AAGACGATATGCACCAGTTAAAAGTGGGGAGTATCTACTCGGGAAGTACA
GACAGACCCACAAGGACTTCGTGGAGGGGAAGCCGAAGCCGAAGCAGGAG
GAGGAGGGGGGAGGAGAGGGAGGGGGGAAATAA

Coding sequence (CDS) from alignment at scaffold_9:124910..126542+

>mRNA_4594 ID=mRNA_4594|Name=jgi.p|Nanoce1779_2|527668|organism=Nannochloropsis oceanica|type=CDS|length=4344bp|location=Sequence derived from alignment at scaffold_9:124910..126542+ (Nannochloropsis oceanica)
ATGTCCTCCCCCACCGCCTGCCCCCTCCCTCAACTCCACCATGCCGCCCT
TCCTATCGTGGACTTCTCCAATACTGACGAGGCTCCGTCAGTTCTGTATA
AAGCCTGCAAGGAATTTGGTTTTTTTTACCTCGTCAATCACGGCGTGCCC
CAGAGCCTTATCGACGACATGTTGGCCCAGTCCAAGGCCTTCTTTTCCCT
TCCCCTCTCCGCCAAAAAAGAGCTCTCCGCCTCCCTCAACAAAATAAATC
GCGGTTATACGGGCTTTGAAGAAGAGACCCTCGATCCGGCATTGCAGAAA
GGAAAGGGGGACACGAAAGAAGGTTATTATATAGGGAGGGAAGTCCCAGC
GGAGAGCGAGGAGGCCAAGGCGTTTCCTCTGCACGGACCCAACGTCTGGC
CGGCAAAGGAAGTGCTCCCGTTATGGAGAGATACCATGACCTCGTATTTC
GCAGCGCTCTCCTCCCTGGGGCTCCAGACCGTCCACCTTCTCCTTCGCTC
CCTCCATCTTCCCGAAAGCGCTTTTGATGCCAATTTTACGCGCCCCATGG
CCGCCTTGCGATTGTTGCATTACTCACCTCAGGCCTCTAACCCGTCTGAA
GGCATCTTTGCCGCAGGTGCCCACTCGGACTACGGTATGTTCACCTTCCT
GATCACTGACGGGACGCCTGGGCTGCAGGTCTGGAGGGAGGGAGGGAAGG
AGGGAGGGAGGGATGGAGGGGGCATATGGCAGGATGTACCGGCGGTAGAA
GGGGCGTTCATTGTGAATCTAGGCGATATGCTCCAGCGCTGGACCAACGA
TGTGTTTCGATCCACCAAGCACCGGGTACTGATCAAGGGGGGAGGGAGGG
AGGGAGGGAGGGAGGGCGGGCGTTATAGTGCCCCTTTCTTTTATGAGCCG
AATTTTGATACGCTTGTGGAGTGCTTGCCCGGGTTCGAGGGGGAGAAGGG
GGAAAGACGATATGCACCAGTTAAAAGTGGGGAGTATCTACTCGGGAAGT
ACAGACAGACCCACAAGGACTTCGTGGAGGGGAAGCCGAAGCCGAAGCAG
GAGGAGGAGGGGGGAGGAGAGGGAGGGGGGAAATAAATGTCCTCCCCCAC
CGCCTGCCCCCTCCCTCAACTCCACCATGCCGCCCTTCCTATCGTGGACT
TCTCCAATACTGACGAGGCTCCGTCAGTTCTGTATAAAGCCTGCAAGGAA
TTTGGTTTTTTTTACCTCGTCAATCACGGCGTGCCCCAGAGCCTTATCGA
CGACATGTTGGCCCAGTCCAAGGCCTTCTTTTCCCTTCCCCTCTCCGCCA
AAAAAGAGCTCTCCGCCTCCCTCAACAAAATAAATCGCGGTTATACGGGC
TTTGAAGAAGAGACCCTCGATCCGGCATTGCAGAAAGGAAAGGGGGACAC
GAAAGAAGGTTATTATATAGGGAGGGAAGTCCCAGCGGAGAGCGAGGAGG
CCAAGGCGTTTCCTCTGCACGGACCCAACGTCTGGCCGGCAAAGGAAGTG
CTCCCGTTATGGAGAGATACCATGACCTCGTATTTCGCAGCGCTCTCCTC
CCTGGGGCTCCAGACCGTCCACCTTCTCCTTCGCTCCCTCCATCTTCCCG
AAAGCGCTTTTGATGCCAATTTTACGCGCCCCATGGCCGCCTTGCGATTG
TTGCATTACTCACCTCAGGCCTCTAACCCGTCTGAAGGCATCTTTGCCGC
AGGTGCCCACTCGGACTACGGTATGTTCACCTTCCTGATCACTGACGGGA
CGCCTGGGCTGCAGGTCTGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAT
GGAGGGGGCATATGGCAGGATGTACCGGCGGTAGAAGGGGCGTTCATTGT
GAATCTAGGCGATATGCTCCAGCGCTGGACCAACGATGTGTTTCGATCCA
CCAAGCACCGGGTACTGATCAAGGGGGGAGGGAGGGAGGGAGGGAGGGAG
GGCGGGCGTTATAGTGCCCCTTTCTTTTATGAGCCGAATTTTGATACGCT
TGTGGAGTGCTTGCCCGGGTTCGAGGGGGAGAAGGGGGAAAGACGATATG
CACCAGTTAAAAGTGGGGAGTATCTACTCGGGAAGTACAGACAGACCCAC
AAGGACTTCGTGGAGGGGAAGCCGAAGCCGAAGCAGGAGGAGGAGGGGGG
AGGAGAGGGAGGGGGGAAATAAATGTCCTCCCCCACCGCCTGCCCCCTCC
CTCAACTCCACCATGCCGCCCTTCCTATCGTGGACTTCTCCAATACTGAC
GAGGCTCCGTCAGTTCTGTATAAAGCCTGCAAGGAATTTGGTTTTTTTTA
CCTCGTCAATCACGGCGTGCCCCAGAGCCTTATCGACGACATGTTGGCCC
AGTCCAAGGCCTTCTTTTCCCTTCCCCTCTCCGCCAAAAAAGAGCTCTCC
GCCTCCCTCAACAAAATAAATCGCGGTTATACGGGCTTTGAAGAAGAGAC
CCTCGATCCGGCATTGCAGAAAGGAAAGGGGGACACGAAAGAAGGTTATT
ATATAGGGAGGGAAGTCCCAGCGGAGAGCGAGGAGGCCAAGGCGTTTCCT
CTGCACGGACCCAACGTCTGGCCGGCAAAGGAAGTGCTCCCGTTATGGAG
AGATACCATGACCTCGTATTTCGCAGCGCTCTCCTCCCTGGGGCTCCAGA
CCGTCCACCTTCTCCTTCGCTCCCTCCATCTTCCCGAAAGCGCTTTTGAT
GCCAATTTTACGCGCCCCATGGCCGCCTTGCGATTGTTGCATTACTCACC
TCAGGCCTCTAACCCGTCTGAAGGCATCTTTGCCGCAGGTGCCCACTCGG
ACTACGGTATGTTCACCTTCCTGATCACTGACGGGACGCCTGGGCTGCAG
GTCTGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGATGGAGGGGGCATATG
GCAGGATGTACCGGCGGTAGAAGGGGCGTTCATTGTGAATCTAGGCGATA
TGCTCCAGCGCTGGACCAACGATGTGTTTCGATCCACCAAGCACCGGGTA
CTGATCAAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGCGTTATAG
TGCCCCTTTCTTTTATGAGCCGAATTTTGATACGCTTGTGGAGTGCTTGC
CCGGGTTCGAGGGGGAGAAGGGGGAAAGACGATATGCACCAGTTAAAAGT
GGGGAGTATCTACTCGGGAAGTACAGACAGACCCACAAGGACTTCGTGGA
GGGGAAGCCGAAGCCGAAGCAGGAGGAGGAGGGGGGAGGAGAGGGAGGGG
GGAAATAAATGTCCTCCCCCACCGCCTGCCCCCTCCCTCAACTCCACCAT
GCCGCCCTTCCTATCGTGGACTTCTCCAATACTGACGAGGCTCCGTCAGT
TCTGTATAAAGCCTGCAAGGAATTTGGTTTTTTTTACCTCGTCAATCACG
GCGTGCCCCAGAGCCTTATCGACGACATGTTGGCCCAGTCCAAGGCCTTC
TTTTCCCTTCCCCTCTCCGCCAAAAAAGAGCTCTCCGCCTCCCTCAACAA
AATAAATCGCGGTTATACGGGCTTTGAAGAAGAGACCCTCGATCCGGCAT
TGCAGAAAGGAAAGGGGGACACGAAAGAAGGTTATTATATAGGGAGGGAA
GTCCCAGCGGAGAGCGAGGAGGCCAAGGCGTTTCCTCTGCACGGACCCAA
CGTCTGGCCGGCAAAGGAAGTGCTCCCGTTATGGAGAGATACCATGACCT
CGTATTTCGCAGCGCTCTCCTCCCTGGGGCTCCAGACCGTCCACCTTCTC
CTTCGCTCCCTCCATCTTCCCGAAAGCGCTTTTGATGCCAATTTTACGCG
CCCCATGGCCGCCTTGCGATTGTTGCATTACTCACCTCAGGCCTCTAACC
CGTCTGAAGGCATCTTTGCCGCAGGTGCCCACTCGGACTACGGTATGTTC
ACCTTCCTGATCACTGACGGGACGCCTGGGCTGCAGGTCTGGAGGGAGGG
AGGGAAGGAGGGAGGGAGGGATGGAGGGGGCATATGGCAGGATGTACCGG
CGGTAGAAGGGGCGTTCATTGTGAATCTAGGCGATATGCTCCAGCGCTGG
ACCAACGATGTGTTTCGATCCACCAAGCACCGGGTACTGATCAAGGGGGG
AGGGAGGGAGGGAGGGAGGGAGGGCGGGCGTTATAGTGCCCCTTTCTTTT
ATGAGCCGAATTTTGATACGCTTGTGGAGTGCTTGCCCGGGTTCGAGGGG
GAGAAGGGGGAAAGACGATATGCACCAGTTAAAAGTGGGGAGTATCTACT
CGGGAAGTACAGACAGACCCACAAGGACTTCGTGGAGGGGAAGCCGAAGC
CGAAGCAGGAGGAGGAGGGGGGAGGAGAGGGAGGGGGGAAATAA

Synonyms

Publications