jgi.p|Nanoce1779_2|436630, mRNA_4593 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|436630
Unique NamemRNA_4593
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1994
Alignment locationscaffold_9:122880..124873 -

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Properties
Property NameValue
TranscriptId436716
TrackFilteredModels2
ProteinId436630
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:122880..124873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|436630gene_4593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|436630mRNA_4593-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4593CDS_4593Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4593 ID=mRNA_4593|Name=jgi.p|Nanoce1779_2|436630|organism=Nannochloropsis oceanica|type=mRNA|length=1994bp
TACAGGAGGAAGGTGGGTAAAGCGTTGCTTGTTAGCATTACAAGGGCAAG
GACATGCTGCTGTGTCGTGTAAGTCATGCCACAACAAATAGAAGTCAAAC
TGTTGTAGGTGTGGTTCCATGTCCTCTGAGTGCCCCATCCTCAGGGCTTC
CTATACAAACGCACCAGTCGCCAAAACACGCTACACTAGGAGACTTCATC
ATGATGCTCGGTTCCACCTCCACACTCAAGCACACCACTGTAGATGCACT
CACACTTTATATGTCACACACAGCGCCAGTATGGCCTACCACAGGGTCAG
TGGCACCAGCACATCGAGAATTAGATTTTTTATGCCGCCTTTCTTGCTGC
TTTTCCACGCCCTTTTTCATCTGCTGCTCCACCGAGTCGTGTCTGCCTCT
GCGTTCTGCCACGAGGCTGCGCACGTCGACCTACCCCTCTTACCTCCCCT
GGCCGCGGTTGGGGAGGCCGGCGTGGCGCGCTTGGGGATCATTCACCTCT
CAACTAATGCTTCTTCCATGTCCTCCTCTGCATGGACCACCGTGCCTCCA
GGCCTCCACCTTTTCTTTGCCCTCTCTCCGTCCGCGTCCTTCTCTACCCA
CGTACCATCAACCCCACCGCAACAAGCCTCCCTCCTATCACTCCTTCGTA
TACTTGCACCCCAAGCCACTCTCCCTTCTTCCTTGCCCTTTCTGAAACAG
TGCAGCCGCATCCCATCGGCGTTGCGCCCAACGGTCGAACGGCAAATACT
AGAGTGGAGCGAGGACAAGGAAGAGGAAGGGAAGCAGGGAGGGGAGCTGT
TGTGGTACCATGTGACGGAGGCAATTGAGATGGAAGAGGAAAGTTTATTC
CCTTTCCTCATGCCACAAGACGAGACAGAGGAGCAAAAGAAGGAGGAAAA
GAAGGAGGAAAAGCCGAAACGGTCCTTGCTAGGCTACGCACTTTCTGCTA
CCTTTTCATCTTACTGCCCGAATACTCCTTCCCCTGCATTTAAGGCCACG
GCCCGCGTCCTAACCTGCCCCTCGACGTCCCTTTGTCCGTCCTCCCCTCC
TTCCTTGGCTCCGTCCCTCACCGTTACGGCGCCAGGCCCTCCAGGATTGC
ACCGCGAAGTCCACTACTCCTTCCAGAACATTCCTCTTCATCCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCT
CCTCCTCCTGTTTCAATTGCCCCAAGGCGCCTACATCGACACGTACCAAT
TGTCGGAACGCCACAATTTCTTCCCCCCCTCCCTCCCTCCTTCCCTCCCC
CCCTTCTCTCGCCCTCTCCTTCTCACAGCTCCCGGGCCTATAGATGTAGA
AAGGCCTTACTCCCATTCCTCCCAGCACTGCATCGCCCTCCTCTTTCACC
TTTCCTCCCTCCCTTCTCCCGTCCCTTCCCTCGTCTCCCTCTCCTTCTCC
CTCCCCCTCCACCTTCGCTACCCTCTCCCCTCCCTCGACCATTCCCACCC
TTTCTCCTTCCTCCCCATTCCCCTCCCCTGGCTCGGGGTCCGCCATAATG
ATCAAGACGACTGGCACCCCCTCCCCCCCGCCCTCCTTCCCGCCGTCCCT
CCCTCCCTTCTACGAGTGCCCGCAGGGGAGGCATGGAGAAGGGGGTATGT
AATCTTTGTCACTTTCCTGGCCGAAACTGTGGGGGCGCTCCTGCTGGTGG
GAGTGGTATGGGGGACGAGGGAAGAAGGAGGAAGAGGAAGAAGAGAAGGC
AGGAGGAAAAAGGGAAAGGGGGAAGAAAAAGAGGAATGAGGAGAATGATG
CACCTGCTACGAAAAGAGTAAGATGTAACACTGCAAGTCATGAAAGTATA
GTAAAATATAAAGCATAGAAATATCGCAAGTTCTACTCAAAGCACCCTGA
TGTCAACAGTAGCCTCCACTTGAATTACTGCGACCATTGAATATGAAAGT
AATCATTGAATCTCAACAAATGCAATCACTGAAACATGTCATTT
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protein sequence of jgi.p|Nanoce1779_2|436630

>mRNA_4593-protein ID=mRNA_4593-protein|Name=jgi.p|Nanoce1779_2|436630|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MSSECPILRASYTNAPVAKTRYTRRLHHDARFHLHTQAHHCRCTHTLYVT
HSASMAYHRVSGTSTSRIRFFMPPFLLLFHALFHLLLHRVVSASAFCHEA
AHVDLPLLPPLAAVGEAGVARLGIIHLSTNASSMSSSAWTTVPPGLHLFF
ALSPSASFSTHVPSTPPQQASLLSLLRILAPQATLPSSLPFLKQCSRIPS
ALRPTVERQILEWSEDKEEEGKQGGELLWYHVTEAIEMEEESLFPFLMPQ
DETEEQKKEEKKEEKPKRSLLGYALSATFSSYCPNTPSPAFKATARVLTC
PSTSLCPSSPPSLAPSLTVTAPGPPGLHREVHYSFQNIPLHPSSSSSSSS
SSSSSSSSPSLLLLFQLPQGAYIDTYQLSERHNFFPPSLPPSLPPFSRPL
LLTAPGPIDVERPYSHSSQHCIALLFHLSSLPSPVPSLVSLSFSLPLHLR
YPLPSLDHSHPFSFLPIPLPWLGVRHNDQDDWHPLPPALLPAVPPSLLRV
PAGEAWRRGYVIFVTFLAETVGALLLVGVVWGTREEGGRGRREGRRKKGK
GEEKEE*
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mRNA from alignment at scaffold_9:122880..124873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4593 ID=mRNA_4593|Name=jgi.p|Nanoce1779_2|436630|organism=Nannochloropsis oceanica|type=mRNA|length=1994bp|location=Sequence derived from alignment at scaffold_9:122880..124873- (Nannochloropsis oceanica)
TACAGGAGGAAGGTGGGTAAAGCGTTGCTTGTTAGCATTACAAGGGCAAG
GACATGCTGCTGTGTCGTGTAAGTCATGCCACAACAAATAGAAGTCAAAC
TGTTGTAGGTGTGGTTCCATGTCCTCTGAGTGCCCCATCCTCAGGGCTTC
CTATACAAACGCACCAGTCGCCAAAACACGCTACACTAGGAGACTTCATC
ATGATGCTCGGTTCCACCTCCACACTCAAGCACACCACTGTAGATGCACT
CACACTTTATATGTCACACACAGCGCCAGTATGGCCTACCACAGGGTCAG
TGGCACCAGCACATCGAGAATTAGATTTTTTATGCCGCCTTTCTTGCTGC
TTTTCCACGCCCTTTTTCATCTGCTGCTCCACCGAGTCGTGTCTGCCTCT
GCGTTCTGCCACGAGGCTGCGCACGTCGACCTACCCCTCTTACCTCCCCT
GGCCGCGGTTGGGGAGGCCGGCGTGGCGCGCTTGGGGATCATTCACCTCT
CAACTAATGCTTCTTCCATGTCCTCCTCTGCATGGACCACCGTGCCTCCA
GGCCTCCACCTTTTCTTTGCCCTCTCTCCGTCCGCGTCCTTCTCTACCCA
CGTACCATCAACCCCACCGCAACAAGCCTCCCTCCTATCACTCCTTCGTA
TACTTGCACCCCAAGCCACTCTCCCTTCTTCCTTGCCCTTTCTGAAACAG
TGCAGCCGCATCCCATCGGCGTTGCGCCCAACGGTCGAACGGCAAATACT
AGAGTGGAGCGAGGACAAGGAAGAGGAAGGGAAGCAGGGAGGGGAGCTGT
TGTGGTACCATGTGACGGAGGCAATTGAGATGGAAGAGGAAAGTTTATTC
CCTTTCCTCATGCCACAAGACGAGACAGAGGAGCAAAAGAAGGAGGAAAA
GAAGGAGGAAAAGCCGAAACGGTCCTTGCTAGGCTACGCACTTTCTGCTA
CCTTTTCATCTTACTGCCCGAATACTCCTTCCCCTGCATTTAAGGCCACG
GCCCGCGTCCTAACCTGCCCCTCGACGTCCCTTTGTCCGTCCTCCCCTCC
TTCCTTGGCTCCGTCCCTCACCGTTACGGCGCCAGGCCCTCCAGGATTGC
ACCGCGAAGTCCACTACTCCTTCCAGAACATTCCTCTTCATCCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCT
CCTCCTCCTGTTTCAATTGCCCCAAGGCGCCTACATCGACACGTACCAAT
TGTCGGAACGCCACAATTTCTTCCCCCCCTCCCTCCCTCCTTCCCTCCCC
CCCTTCTCTCGCCCTCTCCTTCTCACAGCTCCCGGGCCTATAGATGTAGA
AAGGCCTTACTCCCATTCCTCCCAGCACTGCATCGCCCTCCTCTTTCACC
TTTCCTCCCTCCCTTCTCCCGTCCCTTCCCTCGTCTCCCTCTCCTTCTCC
CTCCCCCTCCACCTTCGCTACCCTCTCCCCTCCCTCGACCATTCCCACCC
TTTCTCCTTCCTCCCCATTCCCCTCCCCTGGCTCGGGGTCCGCCATAATG
ATCAAGACGACTGGCACCCCCTCCCCCCCGCCCTCCTTCCCGCCGTCCCT
CCCTCCCTTCTACGAGTGCCCGCAGGGGAGGCATGGAGAAGGGGGTATGT
AATCTTTGTCACTTTCCTGGCCGAAACTGTGGGGGCGCTCCTGCTGGTGG
GAGTGGTATGGGGGACGAGGGAAGAAGGAGGAAGAGGAAGAAGAGAAGGC
AGGAGGAAAAAGGGAAAGGGGGAAGAAAAAGAGGAATGAGGAGAATGATG
CACCTGCTACGAAAAGAGTAAGATGTAACACTGCAAGTCATGAAAGTATA
GTAAAATATAAAGCATAGAAATATCGCAAGTTCTACTCAAAGCACCCTGA
TGTCAACAGTAGCCTCCACTTGAATTACTGCGACCATTGAATATGAAAGT
AATCATTGAATCTCAACAAATGCAATCACTGAAACATGTCATTT
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Coding sequence (CDS) from alignment at scaffold_9:122880..124873-

>mRNA_4593 ID=mRNA_4593|Name=jgi.p|Nanoce1779_2|436630|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_9:122880..124873- (Nannochloropsis oceanica)
ATGTCCTCTGAGTGCCCCATCCTCAGGGCTTCCTATACAAACGCACCAGT
CGCCAAAACACGCTACACTAGGAGACTTCATCATGATGCTCGGTTCCACC
TCCACACTCAAGCACACCACTGTAGATGCACTCACACTTTATATGTCACA
CACAGCGCCAGTATGGCCTACCACAGGGTCAGTGGCACCAGCACATCGAG
AATTAGATTTTTTATGCCGCCTTTCTTGCTGCTTTTCCACGCCCTTTTTC
ATCTGCTGCTCCACCGAGTCGTGTCTGCCTCTGCGTTCTGCCACGAGGCT
GCGCACGTCGACCTACCCCTCTTACCTCCCCTGGCCGCGGTTGGGGAGGC
CGGCGTGGCGCGCTTGGGGATCATTCACCTCTCAACTAATGCTTCTTCCA
TGTCCTCCTCTGCATGGACCACCGTGCCTCCAGGCCTCCACCTTTTCTTT
GCCCTCTCTCCGTCCGCGTCCTTCTCTACCCACGTACCATCAACCCCACC
GCAACAAGCCTCCCTCCTATCACTCCTTCGTATACTTGCACCCCAAGCCA
CTCTCCCTTCTTCCTTGCCCTTTCTGAAACAGTGCAGCCGCATCCCATCG
GCGTTGCGCCCAACGGTCGAACGGCAAATACTAGAGTGGAGCGAGGACAA
GGAAGAGGAAGGGAAGCAGGGAGGGGAGCTGTTGTGGTACCATGTGACGG
AGGCAATTGAGATGGAAGAGGAAAGTTTATTCCCTTTCCTCATGCCACAA
GACGAGACAGAGGAGCAAAAGAAGGAGGAAAAGAAGGAGGAAAAGCCGAA
ACGGTCCTTGCTAGGCTACGCACTTTCTGCTACCTTTTCATCTTACTGCC
CGAATACTCCTTCCCCTGCATTTAAGGCCACGGCCCGCGTCCTAACCTGC
CCCTCGACGTCCCTTTGTCCGTCCTCCCCTCCTTCCTTGGCTCCGTCCCT
CACCGTTACGGCGCCAGGCCCTCCAGGATTGCACCGCGAAGTCCACTACT
CCTTCCAGAACATTCCTCTTCATCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCTCCTCCTGTTTCAATT
GCCCCAAGGCGCCTACATCGACACGTACCAATTGTCGGAACGCCACAATT
TCTTCCCCCCCTCCCTCCCTCCTTCCCTCCCCCCCTTCTCTCGCCCTCTC
CTTCTCACAGCTCCCGGGCCTATAGATGTAGAAAGGCCTTACTCCCATTC
CTCCCAGCACTGCATCGCCCTCCTCTTTCACCTTTCCTCCCTCCCTTCTC
CCGTCCCTTCCCTCGTCTCCCTCTCCTTCTCCCTCCCCCTCCACCTTCGC
TACCCTCTCCCCTCCCTCGACCATTCCCACCCTTTCTCCTTCCTCCCCAT
TCCCCTCCCCTGGCTCGGGGTCCGCCATAATGATCAAGACGACTGGCACC
CCCTCCCCCCCGCCCTCCTTCCCGCCGTCCCTCCCTCCCTTCTACGAGTG
CCCGCAGGGGAGGCATGGAGAAGGGGGTATGTAATCTTTGTCACTTTCCT
GGCCGAAACTGTGGGGGCGCTCCTGCTGGTGGGAGTGGTATGGGGGACGA
GGGAAGAAGGAGGAAGAGGAAGAAGAGAAGGCAGGAGGAAAAAGGGAAAG
GGGGAAGAAAAAGAGGAATGA
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Synonyms
Publications