jgi.p|Nanoce1779_2|436691, mRNA_4592 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|436691
Unique NamemRNA_4592
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length860
Alignment locationscaffold_9:121556..122415 +

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Properties
Property NameValue
TranscriptId436777
TrackFilteredModels2
ProteinId436691
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:121556..122415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|436691gene_4592Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|436691mRNA_4592-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4592CDS_4592Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4592 ID=mRNA_4592|Name=jgi.p|Nanoce1779_2|436691|organism=Nannochloropsis oceanica|type=mRNA|length=860bp
CAGTGCGCGATGGGGGACGGGATAATGTCAGAGCAGCATAATGTAACGCA
GAAGAACGAGGTTTGGTGAGTCTAGCCTCTGGAGGGGGGACGAGCAGGTG
GCAGGAGGAGATCGTGACTCGATGGGATTTGTAAACTCATTTAAATAAGA
GTGTCATATGGGAATCCCATGCATGGTCCTTTGGAAAATGAGAAGGCGTT
GCTTCTCTCTCTGGCCCATTAGCCATGTGTGTTGTGCGCACAGTGAGACC
ACACATGGTGACATGATCAGAGGCAAAATCACAAAACGGGGAGAAATAGT
GATCTCGCCTCTAGACGAATGGCAAACAGATGGCTCTGGAAAAGGGGGGT
TCACTGAATCATTTATTGGGACATACACACGCTGTAAGGAATCCGACGGG
TTAATGACGTTTATCACATGGGCCTCCACAATGCCTCGCACCGCCGCCTT
GGGCAAGGCCAACGTATCATACAAACACAGCTCTCGACCGTCAGCTAGAA
TCCGAACGCACGCAGCAAGTATAGTTTGTGCCGATACAAGAAGGAGGATG
GGAGGGGGGCGCAAACCATTTGCCAGAAAAGATAAAGATTAAAAAAAAAA
GATGGAAATGTTCTCGTTTAGGGGTCTCACAACCCGGTGGCATCGGAGGA
AGCAGGGTTCAATACAACAAGGCGTGGTCTGTGTAAGCAATCCTGCTGTT
CAGTGCTTCCTGAGAGATGAATATGTACAAGAACACACATCTATGATATT
GTATTATTTGCTTTTACGAAGGAAAAGCAACCGACTTACTTAACCGATTT
TCTCTCATCGTACTGATGGATTATGGATGGGGATGGATTTTGATTTTTTC
CGCCTACTGT
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protein sequence of jgi.p|Nanoce1779_2|436691

>mRNA_4592-protein ID=mRNA_4592-protein|Name=jgi.p|Nanoce1779_2|436691|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MGIPCMVLWKMRRRCFSLWPISHVCCAHSETTHGDMIRGKITKRGEIVIS
PLDEWQTDGSGKGGFTESFIGTYTRCKESDGLMTFITWASTMPRTAALGK
ANVSYKHSSRPSARIRTHAASIVCADTRRRMGGGRKPFARKDKD*
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mRNA from alignment at scaffold_9:121556..122415+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4592 ID=mRNA_4592|Name=jgi.p|Nanoce1779_2|436691|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at scaffold_9:121556..122415+ (Nannochloropsis oceanica)
CAGTGCGCGATGGGGGACGGGATAATGTCAGAGCAGCATAATGTAACGCA
GAAGAACGAGGTTTGGTGAGTCTAGCCTCTGGAGGGGGGACGAGCAGGTG
GCAGGAGGAGATCGTGACTCGATGGGATTTGTAAACTCATTTAAATAAGA
GTGTCATATGGGAATCCCATGCATGGTCCTTTGGAAAATGAGAAGGCGTT
GCTTCTCTCTCTGGCCCATTAGCCATGTGTGTTGTGCGCACAGTGAGACC
ACACATGGTGACATGATCAGAGGCAAAATCACAAAACGGGGAGAAATAGT
GATCTCGCCTCTAGACGAATGGCAAACAGATGGCTCTGGAAAAGGGGGGT
TCACTGAATCATTTATTGGGACATACACACGCTGTAAGGAATCCGACGGG
TTAATGACGTTTATCACATGGGCCTCCACAATGCCTCGCACCGCCGCCTT
GGGCAAGGCCAACGTATCATACAAACACAGCTCTCGACCGTCAGCTAGAA
TCCGAACGCACGCAGCAAGTATAGTTTGTGCCGATACAAGAAGGAGGATG
GGAGGGGGGCGCAAACCATTTGCCAGAAAAGATAAAGATTAAAAAAAAAA
GATGGAAATGTTCTCGTTTAGGGGTCTCACAACCCGGTGGCATCGGAGGA
AGCAGGGTTCAATACAACAAGGCGTGGTCTGTGTAAGCAATCCTGCTGTT
CAGTGCTTCCTGAGAGATGAATATGTACAAGAACACACATCTATGATATT
GTATTATTTGCTTTTACGAAGGAAAAGCAACCGACTTACTTAACCGATTT
TCTCTCATCGTACTGATGGATTATGGATGGGGATGGATTTTGATTTTTTC
CGCCTACTGT
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Coding sequence (CDS) from alignment at scaffold_9:121556..122415+

>mRNA_4592 ID=mRNA_4592|Name=jgi.p|Nanoce1779_2|436691|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_9:121556..122415+ (Nannochloropsis oceanica)
ATGGGAATCCCATGCATGGTCCTTTGGAAAATGAGAAGGCGTTGCTTCTC
TCTCTGGCCCATTAGCCATGTGTGTTGTGCGCACAGTGAGACCACACATG
GTGACATGATCAGAGGCAAAATCACAAAACGGGGAGAAATAGTGATCTCG
CCTCTAGACGAATGGCAAACAGATGGCTCTGGAAAAGGGGGGTTCACTGA
ATCATTTATTGGGACATACACACGCTGTAAGGAATCCGACGGGTTAATGA
CGTTTATCACATGGGCCTCCACAATGCCTCGCACCGCCGCCTTGGGCAAG
GCCAACGTATCATACAAACACAGCTCTCGACCGTCAGCTAGAATCCGAAC
GCACGCAGCAAGTATAGTTTGTGCCGATACAAGAAGGAGGATGGGAGGGG
GGCGCAAACCATTTGCCAGAAAAGATAAAGATTAA
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Synonyms
Publications