jgi.p|Nanoce1779_2|670387, mRNA_4588 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670387
Unique NamemRNA_4588
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length696
Alignment locationscaffold_9:109077..110467 -

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Properties
Property NameValue
TranscriptId670473
TrackFilteredModels2
ProteinId670387
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:109077..110467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670387gene_4588Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670387mRNA_4588-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4588CDS_4588Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4588 ID=mRNA_4588|Name=jgi.p|Nanoce1779_2|670387|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
GAGAGGCACGGTATGGCCTACCCATGCCCCCATCTATCTATTATCTATCA
TCTCCGAGCCACACTTACACTTTCCATGCAACTACGAAACACGTGAGAAA
GACTGCGCATAATATTAATGGCTTCTTCTTCCGCTGCTCCTCCGCCGGTT
GACGATAAGAACAAGAGCACTACTGTCCTCCACAACTTCGAGGTGGCCCT
TGCTAGCATTACCAAGCAGCTCGAGCCGCTTCTTGCTGTGCCTTGGCAGA
CAGTGGTGACAAGCCTTAAGGATGAAGAACGTGCCAAGCTCTGCATCGCC
TTGGCCTACACCTCCCATTCTCTTTATTATATGTTCTTACGAACGAAGGG
CCAACCCACCAAGAATCATCGCGTACAAGCGGAGCTTGAGCGAGTCAAGA
AATACATGACTAGGTTACAGATCATCAAGGCAGCCCCCGCGCGTCCCTCC
CTCGAGCCCTCCCTCCAGCCCTCCCTCCAGCCCTCCCTCAAGCTGAATAC
CAAAGCCTCGGCACGCTTCATTACCGCAGCATTACGGAAAGAAGGGCAGG
GCAAGAAGGAGGGAGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAAGGGAAGCCCTATGGCAAA
TGGAGAAGAAGAAAAGACGAGTAGTAGAAAGAGACAACGACAGTGA
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protein sequence of jgi.p|Nanoce1779_2|670387

>mRNA_4588-protein ID=mRNA_4588-protein|Name=jgi.p|Nanoce1779_2|670387|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MASSSAAPPPVDDKNKSTTVLHNFEVALASITKQLEPLLAVPWQTVVTSL
KDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRL
QIIKAAPARPSLEPSLQPSLQPSLKLNTKASARFITAALRKEGQGKKEGA
REEEEEEEEEEEEEEEEEEGKKGSPMANGEEEKTSSRKRQRQ*
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mRNA from alignment at scaffold_9:109077..110467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4588 ID=mRNA_4588|Name=jgi.p|Nanoce1779_2|670387|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at scaffold_9:109077..110467- (Nannochloropsis oceanica)
GAGAGGCACGGTATGGCCTACCCATGCCCCCATCTATCTATTATCTATCA
TCTCCGAGCCACACTTACACTTTCCATGCAACTACGAAACACGTGAGAAA
GACTGCGCATAATATTAATGGCTTCTTCTTCCGCTGCTCCTCCGCCGGTT
GACGATAAGAACAAGAGCACTACTGTCCTCCACAACTTCGAGGTGGCCCT
TGCTAGCATTACCAAGCAGCTCGAGCCGCTTCTTGCTGTGCCTTGGCAGA
CAGTGGTGACAAGGTAGGGAGACCCACACCCACCCACCTACAGAAAATAG
GGATCAGAGGGAATAGGAGAGAGATATAGCGGCCCTCCTCCCATTTGAGG
CGTGTTTTAATTTAAGGCTTAAAGGGGTTGGAACCTCCCCTCCCTTCCTC
CCTCCCCTCCCTCCCCTCCCTCCCCTCCCTCCCCATACATGCACTCACCA
CGAGCCCCTTCCATCCCTACCCTTCCTTCCTTATGTAGCCTTAAGGATGA
AGAACGTGCCAAGCTCTGCATCGCCTTGGCCTACACCTCCCATTCTCTTT
ATTATATGTTCTTACGAACGAAGGTATGTGCGGGAGGGAAGGGAGAAAGG
AGGAGGGTGAGGAGGCCAGGATCGGTCTGGAAGGGGAACATGATATGAGG
GTGCGATGACAGATTCAACTTGACTTACCTTCAAGAATTCAAGGTGGCAG
GTTTGAGAGGTTGTTATCATCATATATTTCGTTCCTCCCATCCTTCCCAC
TGAGGATCCGTATCCATCCTCCCTCCGTACTTGCCTCCCTGCCTCCAACC
CACCTTCCCGCGCTTTCTGCAGGGCCAACCCACCAAGAATCATCGCGTAC
AAGCGGAGCTTGAGCGAGTCAAGAAATACATGACTAGGTTACAGGTAGGC
AGGAAGGGAAGGAAGGAGGGAGGAAGGGAGGGAGAAAGGAAGGAAGGAAG
GGAGGGAGGAAGGGAGGAAGGGAGGAAGGGAGGGAGAGTTGGTATGGGAT
TTGTATTTATCTAAGTTTGACTTACACATGACTTATAGACCTATCCCTGT
TAATTCATTTTTACCTAACTCTCCTCCGTCTTTCCCTCGGTCCCTCCCTT
CTTCCTTACCGCCAGATCATCAAGGCAGCCCCCGCGCGTCCCTCCCTCGA
GCCCTCCCTCCAGCCCTCCCTCCAGCCCTCCCTCAAGCTGAATACCAAAG
CCTCGGCACGCTTCATTACCGCAGCATTACGGAAAGAAGGGCAGGGCAAG
AAGGAGGGAGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGGAAGAAGGGAAGCCCTATGGCAAATGGAG
AAGAAGAAAAGACGAGTAGTAGAAAGAGACAACGACAGTGA
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Coding sequence (CDS) from alignment at scaffold_9:109077..110467-

>mRNA_4588 ID=mRNA_4588|Name=jgi.p|Nanoce1779_2|670387|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_9:109077..110467- (Nannochloropsis oceanica)
ATCATCAAGGCAGCCCCCGCGCGTCCCTCCCTCGAGCCCTCCCTCCAGCC
CTCCCTCCAGCCCTCCCTCAAGCTGAATACCAAAGCCTCGGCACGCTTCA
TTACCGCAGCATTACGGAAAGAAGGGCAGGGCAAGAAGGAGGGAGCGCGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGAAGAAGGGAAGCCCTATGGCAAATGGAGAAGAAGAAAAGACGA
GTAGTAGAAAGAGACAACGACAGTGAGGCCAACCCACCAAGAATCATCGC
GTACAAGCGGAGCTTGAGCGAGTCAAGAAATACATGACTAGGTTACAGCC
TTAAGGATGAAGAACGTGCCAAGCTCTGCATCGCCTTGGCCTACACCTCC
CATTCTCTTTATTATATGTTCTTACGAACGAAGATGGCTTCTTCTTCCGC
TGCTCCTCCGCCGGTTGACGATAAGAACAAGAGCACTACTGTCCTCCACA
ACTTCGAGGTGGCCCTTGCTAGCATTACCAAGCAGCTCGAGCCGCTTCTT
GCTGTGCCTTGGCAGACAGTGGTGACAAGATCATCAAGGCAGCCCCCGCG
CGTCCCTCCCTCGAGCCCTCCCTCCAGCCCTCCCTCCAGCCCTCCCTCAA
GCTGAATACCAAAGCCTCGGCACGCTTCATTACCGCAGCATTACGGAAAG
AAGGGCAGGGCAAGAAGGAGGGAGCGCGGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAAGGGAAGCCC
TATGGCAAATGGAGAAGAAGAAAAGACGAGTAGTAGAAAGAGACAACGAC
AGTGAGGCCAACCCACCAAGAATCATCGCGTACAAGCGGAGCTTGAGCGA
GTCAAGAAATACATGACTAGGTTACAGCCTTAAGGATGAAGAACGTGCCA
AGCTCTGCATCGCCTTGGCCTACACCTCCCATTCTCTTTATTATATGTTC
TTACGAACGAAGATGGCTTCTTCTTCCGCTGCTCCTCCGCCGGTTGACGA
TAAGAACAAGAGCACTACTGTCCTCCACAACTTCGAGGTGGCCCTTGCTA
GCATTACCAAGCAGCTCGAGCCGCTTCTTGCTGTGCCTTGGCAGACAGTG
GTGACAAGATCATCAAGGCAGCCCCCGCGCGTCCCTCCCTCGAGCCCTCC
CTCCAGCCCTCCCTCCAGCCCTCCCTCAAGCTGAATACCAAAGCCTCGGC
ACGCTTCATTACCGCAGCATTACGGAAAGAAGGGCAGGGCAAGAAGGAGG
GAGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGGGAAGAAGGGAAGCCCTATGGCAAATGGAGAAGAAGA
AAAGACGAGTAGTAGAAAGAGACAACGACAGTGAGGCCAACCCACCAAGA
ATCATCGCGTACAAGCGGAGCTTGAGCGAGTCAAGAAATACATGACTAGG
TTACAGCCTTAAGGATGAAGAACGTGCCAAGCTCTGCATCGCCTTGGCCT
ACACCTCCCATTCTCTTTATTATATGTTCTTACGAACGAAGATGGCTTCT
TCTTCCGCTGCTCCTCCGCCGGTTGACGATAAGAACAAGAGCACTACTGT
CCTCCACAACTTCGAGGTGGCCCTTGCTAGCATTACCAAGCAGCTCGAGC
CGCTTCTTGCTGTGCCTTGGCAGACAGTGGTGACAAGATCATCAAGGCAG
CCCCCGCGCGTCCCTCCCTCGAGCCCTCCCTCCAGCCCTCCCTCCAGCCC
TCCCTCAAGCTGAATACCAAAGCCTCGGCACGCTTCATTACCGCAGCATT
ACGGAAAGAAGGGCAGGGCAAGAAGGAGGGAGCGCGGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAAG
GGAAGCCCTATGGCAAATGGAGAAGAAGAAAAGACGAGTAGTAGAAAGAG
ACAACGACAGTGAGGCCAACCCACCAAGAATCATCGCGTACAAGCGGAGC
TTGAGCGAGTCAAGAAATACATGACTAGGTTACAGCCTTAAGGATGAAGA
ACGTGCCAAGCTCTGCATCGCCTTGGCCTACACCTCCCATTCTCTTTATT
ATATGTTCTTACGAACGAAGATGGCTTCTTCTTCCGCTGCTCCTCCGCCG
GTTGACGATAAGAACAAGAGCACTACTGTCCTCCACAACTTCGAGGTGGC
CCTTGCTAGCATTACCAAGCAGCTCGAGCCGCTTCTTGCTGTGCCTTGGC
AGACAGTGGTGACAAG
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Synonyms
Publications