jgi.p|Nanoce1779_2|670385, mRNA_4585 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670385
Unique Name	mRNA_4585
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	818
Alignment location	scaffold_9:97766..99692 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670471
Track	FilteredModels2
ProteinId	670385

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:97766..99692 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670385	gene_4585	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670385	mRNA_4585-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4585	CDS_4585	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:97766..99692-
coding sequence from alignment at scaffold_9:97766..99692-

mRNA sequence

>mRNA_4585 ID=mRNA_4585|Name=jgi.p|Nanoce1779_2|670385|organism=Nannochloropsis oceanica|type=mRNA|length=818bp
AGGACTCATTTCCCTGTCCCAATCCTGCGCACCAAGCTGTCGGAAAGATG
GAGGTCGAATTTATGTTTGGCGCCAACACTGAAGCCAAAAAGAAGGCCAC
TGAAGAGATCTTACGGCAGACCCGCGCTGCCTCCAATGTGGACGTTCATA
GAGGAGAAGATGACTTGTGGAAACTCGCCTCGGAACGACTGTGTCATCAA
ATCAAGACGGACGGCTCGAATTTGGGAAAGGGGATCTTGAAGGTGAACAG
TTTTATCAACCACCGAGTGGACGTAGGTCTTATGGACCTGTGTGGGCATG
CCCTCGCCGACTGCTTTAAGGGCAGTGACGCGACCCTCGTCCTGACGGCG
CAGACAAGTGGGGTCCTCCCAGCACAGGCCTGCGCCCACTACCTCGACCG
GCACATGATATTCGCGCGCGAAAAAAAGCCCATCACAATCACCGAGGCCT
ACCAAGCCGGGAGCAAGAGTCACACCCGCCACTGCGACGTCTCTCTTTTC
GTGGCAAAAGAATTCCTCACCTCCAAGGACAAAGTCCTAATTGTCGATGA
TTTTCTCGCCTCAGGCACCACGGCAGTCGCTCTCTTGGACATTGTCAGAC
AGGCCGGGGCCACATGCGTCGGTTTTGGTTTTTTAGTAGAGAAGGAATTT
GAAAAGGGGAGAGAGCTCCTGTTGGAGGCTCTAAAAGAGGACGAGGGCGG
GGAAGGGAAGGTAGGGGGGGGAGGGGGGGGAGGGAAAATTGTGTGCTTGG
CCAATGTGGTGGCGTTGGAGGGCGAGGAGGGGGGAAAGATCCAATTGAGT
GGGGGGAGGAAGGGCTGA

protein sequence of jgi.p|Nanoce1779_2|670385

>mRNA_4585-protein ID=mRNA_4585-protein|Name=jgi.p|Nanoce1779_2|670385|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MEVEFMFGANTEAKKKATEEILRQTRAASNVDVHRGEDDLWKLASERLCH
QIKTDGSNLGKGILKVNSFINHRVDVGLMDLCGHALADCFKGSDATLVLT
AQTSGVLPAQACAHYLDRHMIFAREKKPITITEAYQAGSKSHTRHCDVSL
FVAKEFLTSKDKVLIVDDFLASGTTAVALLDIVRQAGATCVGFGFLVEKE
FEKGRELLLEALKEDEGGEGKVGGGGGGGKIVCLANVVALEGEEGGKIQL
SGGRKG*

mRNA from alignment at scaffold_9:97766..99692-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4585 ID=mRNA_4585|Name=jgi.p|Nanoce1779_2|670385|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp|location=Sequence derived from alignment at scaffold_9:97766..99692- (Nannochloropsis oceanica)
AGGACTCATTTCCCTGTCCCAATCCTGCGCACCAAGCTGTCGGAAAGATG
GAGGTAAGTAAGTGTACGGCAAGCATGGCATGCCCCTTGTTACCCGCCTC
CCCACAAAAACTCGAGGCACGGCAGTGCTCCTGAAATGCCGCCTCTGCCC
CCATGCCCTAGGTCAGAGTTGGCCGCACCAGCGATGCACCCAGGCAAAGA
AAATTAGCTTACTACGTATTAGCAGTCGGAAGCCAATGCTGCTAGACGGC
CTTCTTTTTGTGTCCGGTCCTTCCTTCTTTCCCCTTCCTCTCCCTCGAAT
GCCTTAGCATGTACGCGCACTCCAGCCGCGCACTCCAGCTGTCATTCCTC
ACTTCTCAGGGTCACTTAAACATTATTCATACACAATTAGATTTAAATCA
ATCTGTGCCAAGTATTCCATATCATCCTCGCGCGGATTCTCCTTTTTTAA
CCCTTCCTCCCTCCCTTCCTTTCCCCCTTCCTCTTTCCTTCTCCTCTTCC
TCTGACGCATCTTCCTCCTCTTTCTCCCTATGCCCCTCATTTTAAGGTCG
AATTTATGTTTGGCGCCAACACTGAAGCCAAAAAGAAGGCCACTGAAGAG
ATCTTACGGCAGACCCGCGCTGCCTCCAATGTGGACGTTCATAGAGGAGA
AGATGACTTGTGGAAACTCGCCTCGGAACGACTGTGTCATCAAATCAAGA
CGGACGGCTCGAATTTGGGAAAGGGGATCTTGAAGGTAAGAGAAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGAAGGGTGGCAGCGAAGACATACCCATT
CGCGCGATGATGGATGCGGTGAATGTAAGTGAGCGAGTATTTGTCGAACT
TGTAAGCCACGCCTTGACCTCTCACTCCTAGTCTCCTGCTCTCCACTTCC
CCTCCCCCCCCTCACTCCCACCCCTCCCTCGTGCGTGTTATTCCCTGTCA
GGTGAACAGTTTTATCAACCACCGAGTGGACGTAGGTCTTATGGACCTGT
GTGGGCATGCCCTCGCCGACTGCTTTAAGGGCAGTGACGCGACCCTCGTC
CTGACGGCGCAGACAAGTGGGGTCCTCCCAGCACAGGTAAGTCACGCTTC
CCTCCTTTCCTCCCCCACTCCCTTCCTCCCTTCCTCCAGGCCTGTGCCCT
GTACCTTCTTCCCTCCCACCCACCCTCCCTTCTTTCTTCCTTCATTCCAT
CCCTTCTTCCAGGCCTGCACCCGGTACTTCCCACCAATTCTCCCTCTCTC
CCTCCCCATCTCCCTCCCTCCCACCTTCCCTCACCCCCTCCCTCATCAAA
GGCCTGCGCCCACTACCTCGACCGGCACATGATATTCGCGCGCGAAAAAA
AGCCCATCACAATCACCGAGGCCTACCAAGCCGGGAGCAAGAGTCACACC
CGCCACTGCGACGTCTCTCTTTTCGTGGCAAAAGAATTCCTCACCTCCAA
GGACAAAGGTACCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCC
GCCCTCCAGTCCTCGTCGCTTTCTTAAACATCATCAGTCACGCAGGGGCC
ACCTGCGTCCTTCCATTCCTCATTCTCTTCCCTCCCTCCCTCCCTCCCTC
CCCCCCTCCCTCCCCCCCTCCCTCCCTTCTTCCCTCCTTCCAGTCCTAAT
TGTCGATGATTTTCTCGCCTCAGGCACCACGGCAGTCGCTCTCTTGGACA
TTGTCAGACAGGCCGGGGCCACATGCGTCGGTTTTGGTTTTTTAGTAGAG
AAGGAATTTGAAAAGGGGAGAGAGCTCCTGTTGGAGGCTCTAAAAGAGGA
CGAGGGCGGGGAAGGGAAGGTAGGGGGGGGAGGGGGGGGAGGGAAAATTG
TGTGCTTGGCCAATGTGGTGGCGTTGGAGGGCGAGGAGGGGGGAAAGATC
CAATTGAGTGGGGGGAGGAAGGGCTGA

Coding sequence (CDS) from alignment at scaffold_9:97766..99692-

>mRNA_4585 ID=mRNA_4585|Name=jgi.p|Nanoce1779_2|670385|organism=Nannochloropsis oceanica|type=CDS|length=3855bp|location=Sequence derived from alignment at scaffold_9:97766..99692- (Nannochloropsis oceanica)
TCCTAATTGTCGATGATTTTCTCGCCTCAGGCACCACGGCAGTCGCTCTC
TTGGACATTGTCAGACAGGCCGGGGCCACATGCGTCGGTTTTGGTTTTTT
AGTAGAGAAGGAATTTGAAAAGGGGAGAGAGCTCCTGTTGGAGGCTCTAA
AAGAGGACGAGGGCGGGGAAGGGAAGGTAGGGGGGGGAGGGGGGGGAGGG
AAAATTGTGTGCTTGGCCAATGTGGTGGCGTTGGAGGGCGAGGAGGGGGG
AAAGATCCAATTGAGTGGGGGGAGGAAGGGCTGAGCCTGCGCCCACTACC
TCGACCGGCACATGATATTCGCGCGCGAAAAAAAGCCCATCACAATCACC
GAGGCCTACCAAGCCGGGAGCAAGAGTCACACCCGCCACTGCGACGTCTC
TCTTTTCGTGGCAAAAGAATTCCTCACCTCCAAGGACAAAGGTGAACAGT
TTTATCAACCACCGAGTGGACGTAGGTCTTATGGACCTGTGTGGGCATGC
CCTCGCCGACTGCTTTAAGGGCAGTGACGCGACCCTCGTCCTGACGGCGC
AGACAAGTGGGGTCCTCCCAGCACAGGTCGAATTTATGTTTGGCGCCAAC
ACTGAAGCCAAAAAGAAGGCCACTGAAGAGATCTTACGGCAGACCCGCGC
TGCCTCCAATGTGGACGTTCATAGAGGAGAAGATGACTTGTGGAAACTCG
CCTCGGAACGACTGTGTCATCAAATCAAGACGGACGGCTCGAATTTGGGA
AAGGGGATCTTGAAGATGGAGTCCTAATTGTCGATGATTTTCTCGCCTCA
GGCACCACGGCAGTCGCTCTCTTGGACATTGTCAGACAGGCCGGGGCCAC
ATGCGTCGGTTTTGGTTTTTTAGTAGAGAAGGAATTTGAAAAGGGGAGAG
AGCTCCTGTTGGAGGCTCTAAAAGAGGACGAGGGCGGGGAAGGGAAGGTA
GGGGGGGGAGGGGGGGGAGGGAAAATTGTGTGCTTGGCCAATGTGGTGGC
GTTGGAGGGCGAGGAGGGGGGAAAGATCCAATTGAGTGGGGGGAGGAAGG
GCTGAGCCTGCGCCCACTACCTCGACCGGCACATGATATTCGCGCGCGAA
AAAAAGCCCATCACAATCACCGAGGCCTACCAAGCCGGGAGCAAGAGTCA
CACCCGCCACTGCGACGTCTCTCTTTTCGTGGCAAAAGAATTCCTCACCT
CCAAGGACAAAGGTGAACAGTTTTATCAACCACCGAGTGGACGTAGGTCT
TATGGACCTGTGTGGGCATGCCCTCGCCGACTGCTTTAAGGGCAGTGACG
CGACCCTCGTCCTGACGGCGCAGACAAGTGGGGTCCTCCCAGCACAGGTC
GAATTTATGTTTGGCGCCAACACTGAAGCCAAAAAGAAGGCCACTGAAGA
GATCTTACGGCAGACCCGCGCTGCCTCCAATGTGGACGTTCATAGAGGAG
AAGATGACTTGTGGAAACTCGCCTCGGAACGACTGTGTCATCAAATCAAG
ACGGACGGCTCGAATTTGGGAAAGGGGATCTTGAAGATGGAGTCCTAATT
GTCGATGATTTTCTCGCCTCAGGCACCACGGCAGTCGCTCTCTTGGACAT
TGTCAGACAGGCCGGGGCCACATGCGTCGGTTTTGGTTTTTTAGTAGAGA
AGGAATTTGAAAAGGGGAGAGAGCTCCTGTTGGAGGCTCTAAAAGAGGAC
GAGGGCGGGGAAGGGAAGGTAGGGGGGGGAGGGGGGGGAGGGAAAATTGT
GTGCTTGGCCAATGTGGTGGCGTTGGAGGGCGAGGAGGGGGGAAAGATCC
AATTGAGTGGGGGGAGGAAGGGCTGAGCCTGCGCCCACTACCTCGACCGG
CACATGATATTCGCGCGCGAAAAAAAGCCCATCACAATCACCGAGGCCTA
CCAAGCCGGGAGCAAGAGTCACACCCGCCACTGCGACGTCTCTCTTTTCG
TGGCAAAAGAATTCCTCACCTCCAAGGACAAAGGTGAACAGTTTTATCAA
CCACCGAGTGGACGTAGGTCTTATGGACCTGTGTGGGCATGCCCTCGCCG
ACTGCTTTAAGGGCAGTGACGCGACCCTCGTCCTGACGGCGCAGACAAGT
GGGGTCCTCCCAGCACAGGTCGAATTTATGTTTGGCGCCAACACTGAAGC
CAAAAAGAAGGCCACTGAAGAGATCTTACGGCAGACCCGCGCTGCCTCCA
ATGTGGACGTTCATAGAGGAGAAGATGACTTGTGGAAACTCGCCTCGGAA
CGACTGTGTCATCAAATCAAGACGGACGGCTCGAATTTGGGAAAGGGGAT
CTTGAAGATGGAGTCCTAATTGTCGATGATTTTCTCGCCTCAGGCACCAC
GGCAGTCGCTCTCTTGGACATTGTCAGACAGGCCGGGGCCACATGCGTCG
GTTTTGGTTTTTTAGTAGAGAAGGAATTTGAAAAGGGGAGAGAGCTCCTG
TTGGAGGCTCTAAAAGAGGACGAGGGCGGGGAAGGGAAGGTAGGGGGGGG
AGGGGGGGGAGGGAAAATTGTGTGCTTGGCCAATGTGGTGGCGTTGGAGG
GCGAGGAGGGGGGAAAGATCCAATTGAGTGGGGGGAGGAAGGGCTGAGCC
TGCGCCCACTACCTCGACCGGCACATGATATTCGCGCGCGAAAAAAAGCC
CATCACAATCACCGAGGCCTACCAAGCCGGGAGCAAGAGTCACACCCGCC
ACTGCGACGTCTCTCTTTTCGTGGCAAAAGAATTCCTCACCTCCAAGGAC
AAAGGTGAACAGTTTTATCAACCACCGAGTGGACGTAGGTCTTATGGACC
TGTGTGGGCATGCCCTCGCCGACTGCTTTAAGGGCAGTGACGCGACCCTC
GTCCTGACGGCGCAGACAAGTGGGGTCCTCCCAGCACAGGTCGAATTTAT
GTTTGGCGCCAACACTGAAGCCAAAAAGAAGGCCACTGAAGAGATCTTAC
GGCAGACCCGCGCTGCCTCCAATGTGGACGTTCATAGAGGAGAAGATGAC
TTGTGGAAACTCGCCTCGGAACGACTGTGTCATCAAATCAAGACGGACGG
CTCGAATTTGGGAAAGGGGATCTTGAAGATGGAGTCCTAATTGTCGATGA
TTTTCTCGCCTCAGGCACCACGGCAGTCGCTCTCTTGGACATTGTCAGAC
AGGCCGGGGCCACATGCGTCGGTTTTGGTTTTTTAGTAGAGAAGGAATTT
GAAAAGGGGAGAGAGCTCCTGTTGGAGGCTCTAAAAGAGGACGAGGGCGG
GGAAGGGAAGGTAGGGGGGGGAGGGGGGGGAGGGAAAATTGTGTGCTTGG
CCAATGTGGTGGCGTTGGAGGGCGAGGAGGGGGGAAAGATCCAATTGAGT
GGGGGGAGGAAGGGCTGAGCCTGCGCCCACTACCTCGACCGGCACATGAT
ATTCGCGCGCGAAAAAAAGCCCATCACAATCACCGAGGCCTACCAAGCCG
GGAGCAAGAGTCACACCCGCCACTGCGACGTCTCTCTTTTCGTGGCAAAA
GAATTCCTCACCTCCAAGGACAAAGGTGAACAGTTTTATCAACCACCGAG
TGGACGTAGGTCTTATGGACCTGTGTGGGCATGCCCTCGCCGACTGCTTT
AAGGGCAGTGACGCGACCCTCGTCCTGACGGCGCAGACAAGTGGGGTCCT
CCCAGCACAGGTCGAATTTATGTTTGGCGCCAACACTGAAGCCAAAAAGA
AGGCCACTGAAGAGATCTTACGGCAGACCCGCGCTGCCTCCAATGTGGAC
GTTCATAGAGGAGAAGATGACTTGTGGAAACTCGCCTCGGAACGACTGTG
TCATCAAATCAAGACGGACGGCTCGAATTTGGGAAAGGGGATCTTGAAGA
TGGAG

Synonyms

Publications