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Properties
| Property Name | Value |
|---|
| TranscriptId | 436480 |
| Track | FilteredModels2 |
| ProteinId | 436394 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:90839..93400 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4584 ID=mRNA_4584|Name=jgi.p|Nanoce1779_2|436394|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp
GCTTCCCAACAGGCTGCCAGTCCCCAGCTTTCGCCTTCGCAGGGAGGGGG
GGACGGAGGGAGGGAGGGAGGGGTGTGTCTGTCTCAGGAGGATGAGGAGA
GATTATTCCAGGTGATGAGTAGGGATGAGGAGGCGGAGTGGAGGAGGAGG
AAGAAGGAGGGGAAGGCCGCCTGGCGTGGCCTAGAGGAGGAGGAGGAGGA
GGAAGGGGAGGGGGAGGGGGAGGGGGAGGAAGGGAGGGAGGACAGGGAGG
AGAGGCGGAGTATGAGGGAGATGCACTTGACGCAGAGAGAGGAGGGTAAT
GAGGCGTATATGGAGGAGGAGGAGGAGGTGATGGAGAGGCTGAAAACACC
TCAGAAAAAGGAGAAGGGGAGGAAGAGGAGAAGGAGGGAGGAGGAGGGGG
AGGAAGGAGGGGAGGAAGGAGGAGGGAAGATGGCACTAGGATTGTCGATG
TCTCCATCGCAGAAAAGAAGAGGGGAAGGAGGAAAAGGAGAAGATAAAGG
AGGAGGAGGAATAGAAGGAGGGCATGCTTTATCTCCCATTCAGAGGGGCT
CGCAGACCCCTTCCCCCTTGAAGAGAAAGCCTCAAAATTACGGTGACTCC
CAGACACCTTCTCCCCGGAAGAGAAATCCACAAAATTACGGTAATTCGCA
ACAGTCTCTCTCTCCTGCGGTATTCACTCCTCCGCCTGGTGATAGTGGTG
GAATTGGGGGTGTAGGAGGAAGGGGAGGAGGAAGAGGGGGAGGAGGAGGG
CGGTTTCCCATGCCTCGAGGAGAGAGGCACGAAGAAGAGGATCCACTCAG
TTTCGTTCTCCTCACGCAACACGAGCAGCAGCAGCAGCAGCAACAGCAGC
AGCGACTGCAGCAACAGCAGCAGCAACACCACTGGCAAGACAAGAAGGAG
AAGCAGCAGGAGCAGGAGCAGGGAATGGAGGAAGAGGGGGCTGGTGGAGG
GGCAGGTCATCATCATCATCATCATCAGCAGCAGCAGCAGCACCAGCAGC
CGCCGTTGCCACTTCCCCCTTCTCTCACTCCCTCCCCAAGCCCTACTTCC
CTCCCTACCTACCCGGACGAAGGAGACGAGGAGGAAGGGGAGACGGGAGT
GGTGGGGAGCAGTAGGGGTAACAGCAGCAGTAGCAGCAGTAGTGTAAGTT
GCAGCACCAAGAAGGACAGCAATAAACGCAAGCCTCTCGCCCTCGGCCCC
CGAGGGATGGCAGCTCTCTACGCCTCTGTCTCCTGCCCGCCCTCCTCCTC
TTCCTCCCCCTCTTTCTCTCCTTCCTTCCGACCTCTCCTCCTCCGATACC
ATCGTCCCTTCGCCCCCTCCCGCCAGCATGTCCTTTCCACGCTCCATCCC
GTCTATGGCCTCCCCCCTTTCCTCCCTCCCTCCCTCCACTACACCTCCCG
ACAAGATCTAGTCCGGCAATCGGGCCATCATCATCACCCCTCCGATCATC
TCCTCCCCTGGGACCTCAACCCCTCCCTCCTCCTCGCCCTCAACTACCGA
CAGCAGCAGCAGCAGCAGCAGCAGCCGCCGTCGGTCGCTCCCTTCCTTTC
TCCCTCCCTCCCTCCCTCTTCCTCCTCCCCTAACGGTTGTCCCCTGTGCA
AGGCAGGAGAGGCCCTCAAAAGTCGACCCGCCCAACTCCTCCTCGCTTCC
CTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCAATGATCCTCCTCGTTCC
TACCACACGGAGGCCTCCCTTGCCCGCAACCGTCCGAAAATGGCTCTTGA
AGGAAGATCGGAAGGAGAGGAAGAAGGGGAAGGAGGGAGGGAGGGAGGGA
GGGAGGGAAGGGAGCGAAGCGTTAGATTTTGGAAGGAATCCGATGGGTGT
GTTGGGGAGGGGAGGAAGAGGAGGAGGAGAGGGAGGAGGAGGAGGAGGAA
AAGGAGGAGGCGCCAAAATGGAAATGGACCCGAATACGGGTCAACTCATT
CCTCCCTCCCTCCCCCCCTCCTCTTCATCCTCCTCCATAACCCCATCGGA
CGGCTCTGCAGTCAAACCGCCTCCCCCTCGTTCCCTTCGCCCCCTCCCTC
GGTGGGGATGGATCGGAGGGTCGCAAATCAGTGCTGCCTCCCCCTCCCTG
TCTGCTTCGAAGACGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGT
TGCCGCGGCCGTCGGAGGGGAATAGACTGACGGCCTTGTCGATGGAGCTG
CATGTGAACACTCGGGGAGCTCTGCAACCCGACCCGGAGAAAGACGCCAT
CGTGGCAGTGTGCTTCACGGTACGCGATTACCGAAACTGGAGCAGCGAGC
ACGAAGACGTTCAGGAGCAAGTCGGCGTTATCCT back to topprotein sequence of jgi.p|Nanoce1779_2|436394 >mRNA_4584-protein ID=mRNA_4584-protein|Name=jgi.p|Nanoce1779_2|436394|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MSRDEEAEWRRRKKEGKAAWRGLEEEEEEEGEGEGEGEEGREDREERRSM
REMHLTQREEGNEAYMEEEEEVMERLKTPQKKEKGRKRRRREEEGEEGGE
EGGGKMALGLSMSPSQKRRGEGGKGEDKGGGGIEGGHALSPIQRGSQTPS
PLKRKPQNYGDSQTPSPRKRNPQNYGNSQQSLSPAVFTPPPGDSGGIGGV
GGRGGGRGGGGGRFPMPRGERHEEEDPLSFVLLTQHEQQQQQQQQQRLQQ
QQQQHHWQDKKEKQQEQEQGMEEEGAGGGAGHHHHHHQQQQQHQQPPLPL
PPSLTPSPSPTSLPTYPDEGDEEEGETGVVGSSRGNSSSSSSSVSCSTKK
DSNKRKPLALGPRGMAALYASVSCPPSSSSSPSFSPSFRPLLLRYHRPFA
PSRQHVLSTLHPVYGLPPFLPPSLHYTSRQDLVRQSGHHHHPSDHLLPWD
LNPSLLLALNYRQQQQQQQQPPSVAPFLSPSLPPSSSSPNGCPLCKAGEA
LKSRPAQLLLASLPPSLPPFLPPMILLVPTTRRPPLPATVRKWLLKEDRK
ERKKGKEGGREGGREGSEALDFGRNPMGVLGRGGRGGGEGGGGGGKGGGA
KMEMDPNTGQLIPPSLPPSSSSSSITPSDGSAVKPPPPRSLRPLPRWGWI
GGSQISAASPSLSASKTRRREGGREGGRVAAAVGGE* back to topmRNA from alignment at scaffold_9:90839..93400- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4584 ID=mRNA_4584|Name=jgi.p|Nanoce1779_2|436394|organism=Nannochloropsis oceanica|type=mRNA|length=2562bp|location=Sequence derived from alignment at scaffold_9:90839..93400- (Nannochloropsis oceanica)
GCTTCCCAACAGGCTGCCAGTCCCCAGCTTTCGCCTTCGCAGGGAGGGGG
GGACGGAGGGAGGGAGGGAGGGGTGTGTCTGTCTCAGGAGGATGAGGAGA
GATTATTCCAGGTGATGAGTAGGGATGAGGAGGCGGAGTGGAGGAGGAGG
AAGAAGGAGGGGAAGGCCGCCTGGCGTGGCCTAGAGGAGGAGGAGGAGGA
GGAAGGGGAGGGGGAGGGGGAGGGGGAGGAAGGGAGGGAGGACAGGGAGG
AGAGGCGGAGTATGAGGGAGATGCACTTGACGCAGAGAGAGGAGGGTAAT
GAGGCGTATATGGAGGAGGAGGAGGAGGTGATGGAGAGGCTGAAAACACC
TCAGAAAAAGGAGAAGGGGAGGAAGAGGAGAAGGAGGGAGGAGGAGGGGG
AGGAAGGAGGGGAGGAAGGAGGAGGGAAGATGGCACTAGGATTGTCGATG
TCTCCATCGCAGAAAAGAAGAGGGGAAGGAGGAAAAGGAGAAGATAAAGG
AGGAGGAGGAATAGAAGGAGGGCATGCTTTATCTCCCATTCAGAGGGGCT
CGCAGACCCCTTCCCCCTTGAAGAGAAAGCCTCAAAATTACGGTGACTCC
CAGACACCTTCTCCCCGGAAGAGAAATCCACAAAATTACGGTAATTCGCA
ACAGTCTCTCTCTCCTGCGGTATTCACTCCTCCGCCTGGTGATAGTGGTG
GAATTGGGGGTGTAGGAGGAAGGGGAGGAGGAAGAGGGGGAGGAGGAGGG
CGGTTTCCCATGCCTCGAGGAGAGAGGCACGAAGAAGAGGATCCACTCAG
TTTCGTTCTCCTCACGCAACACGAGCAGCAGCAGCAGCAGCAACAGCAGC
AGCGACTGCAGCAACAGCAGCAGCAACACCACTGGCAAGACAAGAAGGAG
AAGCAGCAGGAGCAGGAGCAGGGAATGGAGGAAGAGGGGGCTGGTGGAGG
GGCAGGTCATCATCATCATCATCATCAGCAGCAGCAGCAGCACCAGCAGC
CGCCGTTGCCACTTCCCCCTTCTCTCACTCCCTCCCCAAGCCCTACTTCC
CTCCCTACCTACCCGGACGAAGGAGACGAGGAGGAAGGGGAGACGGGAGT
GGTGGGGAGCAGTAGGGGTAACAGCAGCAGTAGCAGCAGTAGTGTAAGTT
GCAGCACCAAGAAGGACAGCAATAAACGCAAGCCTCTCGCCCTCGGCCCC
CGAGGGATGGCAGCTCTCTACGCCTCTGTCTCCTGCCCGCCCTCCTCCTC
TTCCTCCCCCTCTTTCTCTCCTTCCTTCCGACCTCTCCTCCTCCGATACC
ATCGTCCCTTCGCCCCCTCCCGCCAGCATGTCCTTTCCACGCTCCATCCC
GTCTATGGCCTCCCCCCTTTCCTCCCTCCCTCCCTCCACTACACCTCCCG
ACAAGATCTAGTCCGGCAATCGGGCCATCATCATCACCCCTCCGATCATC
TCCTCCCCTGGGACCTCAACCCCTCCCTCCTCCTCGCCCTCAACTACCGA
CAGCAGCAGCAGCAGCAGCAGCAGCCGCCGTCGGTCGCTCCCTTCCTTTC
TCCCTCCCTCCCTCCCTCTTCCTCCTCCCCTAACGGTTGTCCCCTGTGCA
AGGCAGGAGAGGCCCTCAAAAGTCGACCCGCCCAACTCCTCCTCGCTTCC
CTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCAATGATCCTCCTCGTTCC
TACCACACGGAGGCCTCCCTTGCCCGCAACCGTCCGAAAATGGCTCTTGA
AGGAAGATCGGAAGGAGAGGAAGAAGGGGAAGGAGGGAGGGAGGGAGGGA
GGGAGGGAAGGGAGCGAAGCGTTAGATTTTGGAAGGAATCCGATGGGTGT
GTTGGGGAGGGGAGGAAGAGGAGGAGGAGAGGGAGGAGGAGGAGGAGGAA
AAGGAGGAGGCGCCAAAATGGAAATGGACCCGAATACGGGTCAACTCATT
CCTCCCTCCCTCCCCCCCTCCTCTTCATCCTCCTCCATAACCCCATCGGA
CGGCTCTGCAGTCAAACCGCCTCCCCCTCGTTCCCTTCGCCCCCTCCCTC
GGTGGGGATGGATCGGAGGGTCGCAAATCAGTGCTGCCTCCCCCTCCCTG
TCTGCTTCGAAGACGAGGAAGGGAGGGAGGAAAGGGGGGAGGAAGCGAAG
GACGGAGGCAGCTGACGATGATCCGGGGGGGTTTCGGCATCGGCCGCCGC
TGGCCTTGGGTGGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGTTGCCGCGGCCGTCGGAGGGGAATAGACTGACGGCCTTGTC
GATGGAGCTGCATGTGAACACTCGGGGAGCTCTGCAACCCGACCCGGAGA
AAGACGCCATCGTGGCAGTGTGCTTCACGGTGAGGGAACGAGGGAGATAA
GAACAAGAGGAGACGCTATGTGGTGGTCCAGTAGTCATTTGGTTCCTTCT
TCCCTCCTTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCTCTAGGTA
CGCGATTACCGAAACTGGAGCAGCGAGCACGAAGACGTTCAGGAGCAAGT
CGGCGTTATCCT back to topCoding sequence (CDS) from alignment at scaffold_9:90839..93400- >mRNA_4584 ID=mRNA_4584|Name=jgi.p|Nanoce1779_2|436394|organism=Nannochloropsis oceanica|type=CDS|length=4122bp|location=Sequence derived from alignment at scaffold_9:90839..93400- (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTGCCGCGGCCGTCGGAGGG
GAATAGATGAGTAGGGATGAGGAGGCGGAGTGGAGGAGGAGGAAGAAGGA
GGGGAAGGCCGCCTGGCGTGGCCTAGAGGAGGAGGAGGAGGAGGAAGGGG
AGGGGGAGGGGGAGGGGGAGGAAGGGAGGGAGGACAGGGAGGAGAGGCGG
AGTATGAGGGAGATGCACTTGACGCAGAGAGAGGAGGGTAATGAGGCGTA
TATGGAGGAGGAGGAGGAGGTGATGGAGAGGCTGAAAACACCTCAGAAAA
AGGAGAAGGGGAGGAAGAGGAGAAGGAGGGAGGAGGAGGGGGAGGAAGGA
GGGGAGGAAGGAGGAGGGAAGATGGCACTAGGATTGTCGATGTCTCCATC
GCAGAAAAGAAGAGGGGAAGGAGGAAAAGGAGAAGATAAAGGAGGAGGAG
GAATAGAAGGAGGGCATGCTTTATCTCCCATTCAGAGGGGCTCGCAGACC
CCTTCCCCCTTGAAGAGAAAGCCTCAAAATTACGGTGACTCCCAGACACC
TTCTCCCCGGAAGAGAAATCCACAAAATTACGGTAATTCGCAACAGTCTC
TCTCTCCTGCGGTATTCACTCCTCCGCCTGGTGATAGTGGTGGAATTGGG
GGTGTAGGAGGAAGGGGAGGAGGAAGAGGGGGAGGAGGAGGGCGGTTTCC
CATGCCTCGAGGAGAGAGGCACGAAGAAGAGGATCCACTCAGTTTCGTTC
TCCTCACGCAACACGAGCAGCAGCAGCAGCAGCAACAGCAGCAGCGACTG
CAGCAACAGCAGCAGCAACACCACTGGCAAGACAAGAAGGAGAAGCAGCA
GGAGCAGGAGCAGGGAATGGAGGAAGAGGGGGCTGGTGGAGGGGCAGGTC
ATCATCATCATCATCATCAGCAGCAGCAGCAGCACCAGCAGCCGCCGTTG
CCACTTCCCCCTTCTCTCACTCCCTCCCCAAGCCCTACTTCCCTCCCTAC
CTACCCGGACGAAGGAGACGAGGAGGAAGGGGAGACGGGAGTGGTGGGGA
GCAGTAGGGGTAACAGCAGCAGTAGCAGCAGTAGTGTAAGTTGCAGCACC
AAGAAGGACAGCAATAAACGCAAGCCTCTCGCCCTCGGCCCCCGAGGGAT
GGCAGCTCTCTACGCCTCTGTCTCCTGCCCGCCCTCCTCCTCTTCCTCCC
CCTCTTTCTCTCCTTCCTTCCGACCTCTCCTCCTCCGATACCATCGTCCC
TTCGCCCCCTCCCGCCAGCATGTCCTTTCCACGCTCCATCCCGTCTATGG
CCTCCCCCCTTTCCTCCCTCCCTCCCTCCACTACACCTCCCGACAAGATC
TAGTCCGGCAATCGGGCCATCATCATCACCCCTCCGATCATCTCCTCCCC
TGGGACCTCAACCCCTCCCTCCTCCTCGCCCTCAACTACCGACAGCAGCA
GCAGCAGCAGCAGCAGCCGCCGTCGGTCGCTCCCTTCCTTTCTCCCTCCC
TCCCTCCCTCTTCCTCCTCCCCTAACGGTTGTCCCCTGTGCAAGGCAGGA
GAGGCCCTCAAAAGTCGACCCGCCCAACTCCTCCTCGCTTCCCTCCCTCC
CTCCCTCCCTCCCTTTCTCCCTCCAATGATCCTCCTCGTTCCTACCACAC
GGAGGCCTCCCTTGCCCGCAACCGTCCGAAAATGGCTCTTGAAGGAAGAT
CGGAAGGAGAGGAAGAAGGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGGAGCGAAGCGTTAGATTTTGGAAGGAATCCGATGGGTGTGTTGGGGA
GGGGAGGAAGAGGAGGAGGAGAGGGAGGAGGAGGAGGAGGAAAAGGAGGA
GGCGCCAAAATGGAAATGGACCCGAATACGGGTCAACTCATTCCTCCCTC
CCTCCCCCCCTCCTCTTCATCCTCCTCCATAACCCCATCGGACGGCTCTG
CAGTCAAACCGCCTCCCCCTCGTTCCCTTCGCCCCCTCCCTCGGTGGGGA
TGGATCGGAGGGTCGCAAATCAGTGCTGCCTCCCCCTCCCTGTCTGCTTC
GAAGACGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTGCCGCGG
CCGTCGGAGGGGAATAGATGAGTAGGGATGAGGAGGCGGAGTGGAGGAGG
AGGAAGAAGGAGGGGAAGGCCGCCTGGCGTGGCCTAGAGGAGGAGGAGGA
GGAGGAAGGGGAGGGGGAGGGGGAGGGGGAGGAAGGGAGGGAGGACAGGG
AGGAGAGGCGGAGTATGAGGGAGATGCACTTGACGCAGAGAGAGGAGGGT
AATGAGGCGTATATGGAGGAGGAGGAGGAGGTGATGGAGAGGCTGAAAAC
ACCTCAGAAAAAGGAGAAGGGGAGGAAGAGGAGAAGGAGGGAGGAGGAGG
GGGAGGAAGGAGGGGAGGAAGGAGGAGGGAAGATGGCACTAGGATTGTCG
ATGTCTCCATCGCAGAAAAGAAGAGGGGAAGGAGGAAAAGGAGAAGATAA
AGGAGGAGGAGGAATAGAAGGAGGGCATGCTTTATCTCCCATTCAGAGGG
GCTCGCAGACCCCTTCCCCCTTGAAGAGAAAGCCTCAAAATTACGGTGAC
TCCCAGACACCTTCTCCCCGGAAGAGAAATCCACAAAATTACGGTAATTC
GCAACAGTCTCTCTCTCCTGCGGTATTCACTCCTCCGCCTGGTGATAGTG
GTGGAATTGGGGGTGTAGGAGGAAGGGGAGGAGGAAGAGGGGGAGGAGGA
GGGCGGTTTCCCATGCCTCGAGGAGAGAGGCACGAAGAAGAGGATCCACT
CAGTTTCGTTCTCCTCACGCAACACGAGCAGCAGCAGCAGCAGCAACAGC
AGCAGCGACTGCAGCAACAGCAGCAGCAACACCACTGGCAAGACAAGAAG
GAGAAGCAGCAGGAGCAGGAGCAGGGAATGGAGGAAGAGGGGGCTGGTGG
AGGGGCAGGTCATCATCATCATCATCATCAGCAGCAGCAGCAGCACCAGC
AGCCGCCGTTGCCACTTCCCCCTTCTCTCACTCCCTCCCCAAGCCCTACT
TCCCTCCCTACCTACCCGGACGAAGGAGACGAGGAGGAAGGGGAGACGGG
AGTGGTGGGGAGCAGTAGGGGTAACAGCAGCAGTAGCAGCAGTAGTGTAA
GTTGCAGCACCAAGAAGGACAGCAATAAACGCAAGCCTCTCGCCCTCGGC
CCCCGAGGGATGGCAGCTCTCTACGCCTCTGTCTCCTGCCCGCCCTCCTC
CTCTTCCTCCCCCTCTTTCTCTCCTTCCTTCCGACCTCTCCTCCTCCGAT
ACCATCGTCCCTTCGCCCCCTCCCGCCAGCATGTCCTTTCCACGCTCCAT
CCCGTCTATGGCCTCCCCCCTTTCCTCCCTCCCTCCCTCCACTACACCTC
CCGACAAGATCTAGTCCGGCAATCGGGCCATCATCATCACCCCTCCGATC
ATCTCCTCCCCTGGGACCTCAACCCCTCCCTCCTCCTCGCCCTCAACTAC
CGACAGCAGCAGCAGCAGCAGCAGCAGCCGCCGTCGGTCGCTCCCTTCCT
TTCTCCCTCCCTCCCTCCCTCTTCCTCCTCCCCTAACGGTTGTCCCCTGT
GCAAGGCAGGAGAGGCCCTCAAAAGTCGACCCGCCCAACTCCTCCTCGCT
TCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCAATGATCCTCCTCGT
TCCTACCACACGGAGGCCTCCCTTGCCCGCAACCGTCCGAAAATGGCTCT
TGAAGGAAGATCGGAAGGAGAGGAAGAAGGGGAAGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGGGAGCGAAGCGTTAGATTTTGGAAGGAATCCGATGGG
TGTGTTGGGGAGGGGAGGAAGAGGAGGAGGAGAGGGAGGAGGAGGAGGAG
GAAAAGGAGGAGGCGCCAAAATGGAAATGGACCCGAATACGGGTCAACTC
ATTCCTCCCTCCCTCCCCCCCTCCTCTTCATCCTCCTCCATAACCCCATC
GGACGGCTCTGCAGTCAAACCGCCTCCCCCTCGTTCCCTTCGCCCCCTCC
CTCGGTGGGGATGGATCGGAGGGTCGCAAATCAGTGCTGCCTCCCCCTCC
CTGTCTGCTTCGAAGACGAGGA back to top
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