jgi.p|Nanoce1779_2|670382, mRNA_4582 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670382
Unique NamemRNA_4582
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1737
Alignment locationscaffold_9:81407..83548 -

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Properties
Property NameValue
TranscriptId670468
TrackFilteredModels2
ProteinId670382
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:81407..83548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670382gene_4582Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670382mRNA_4582-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4582CDS_4582Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4582 ID=mRNA_4582|Name=jgi.p|Nanoce1779_2|670382|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
CTCGCTCGCCCACCACCGAAGCCATGCTTATATATTTTTTTTGGGGGGGA
TAAGGCTGTGGGAGGGAGGGGAGGGGAGTGTGGGATAAGCGCTGCAGCCA
GCAAGGCAGGGAAAATAAATCTGTCGGGGTGAGATCGCGCTTGTTTTAAC
GAACATGTAACGAGGGGAACGATACATAGTAAATGTGAGATGTCAAGGCA
GTGAATTTCGACAATCATCATGTAGAACAATGAAGGCGAAACGTGAAGCG
ACGATTGCCGTGTCTGCCTTGGTCAGGTGATGCCTAAGACACCAGCAAAA
AGCCAAGGGATCCTCCATATGCACACCTTGTACAGTTTCGACCTTGTCCA
CACCGGAAATATTACCTACATAGACATGCCCAGCCCGTGCCTATGTGCGT
CTTTTTAATTCCCGCCGTGTCCTGCTCATCGTGTGCTTTTGCGAAATACT
TGGCTGTGACGGACCCGTCTTCGGGCTTGGACAGCGACAGCTCATCAGCA
AGCGACGCATCGACGTAATTGACATCCCCGCTCCACAAAAAACTCCCCAG
ACTCTTACCACATCTCCCAGAGGCTTGACCTAGTATACCATGCTCAGCGC
TGTAGCTAGGCACCGCGCCATGTGTCAGCTCCGACATACAGCTCTCTTGT
AGCCTCCACCTCACCACCACCTCCCTCCATCCCCTCACCATACATCACGC
AACACACGACACAACAGCTCATCCATTAAAATAAAACAATGGCTCGCCAC
GCCACTTCTTCCCTTCTGACCCTCCTCTGCCTCGCTCTGCTGGCTGTGTC
CTCCTTCGCCTTCATGCCTATGCGCCCTTCCCTCTCCTTGAGCCGAATGA
AGGCTGCTTCTCTCTCCGCCCCGTCTTCCCGTGGCACCCGCAATGGCCGC
TCTAAGGGCCTGACGGCCATGGATATGCAGTATTGGGAAGGAGAGTGGGT
GTGCGCGGACTGCGGCTACATATACAACGAGCAGGACTGCGGTGGCATGC
GCTTTGAGGACCAAAAGAGGGGATTTAAGTGCCCTCAATGCTCAGCACCT
CGGCGTCGGTTTGCCAAGAAGGTGGGGGACAAGATCGGTGTGACGAACGA
TGGAGGCGACGCCCCTATCCTCCTCTTCTCGATTGTGGGGGGCTTGGCCG
TGATTGGCTTCGGGATCTATGCGGCCTTGTCTGGGGAAGGGTTGGAGGAG
GGAAAGGGTAAGAATTAGGGCGGGAGTGTGAAGGTGAGGAAAGCAGATAC
AATGATGAATGATCACGGAAAGAAAGAGAGGGACTGGAAGTAAAAGAAAT
ATTTTTAAAAACAGACAGAGAGAGAGAGAGACACACACACACACACAGAC
AGACACACACACACTCGAGTACTAAGAGTGTGAGTGCAGTGAAGAAGGAG
AAAAAGAGGAAAGAAAGAAAGAAAAGGCGAAGGAGAATAAGGCGGAGGAA
TAAGAAGGAGATGGTGATGATGAAAGAACGAGAAACATCACAGTGGCCTG
ATACACGCATTTGGTGCTTCGTTTTAAAGTTATTTTCCTCCTTCTCTCCC
TCTCTCCCTCCTCCCTCTCTCTCTCCCTACACCGAAATGACCCGACTTCC
CACTGGCGATGGCGAGCGAGACCTCCCTCCGTCTCTCCCTCCCCCTCCCC
CTCCTCGTGGACTGCTCCCGCCGCTGGGATGATACGCACTTTCCCCTCTC
ACCAATCCAAACAACGCCAGCTCCACCTCCCCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|670382

>mRNA_4582-protein ID=mRNA_4582-protein|Name=jgi.p|Nanoce1779_2|670382|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MARHATSSLLTLLCLALLAVSSFAFMPMRPSLSLSRMKAASLSAPSSRGT
RNGRSKGLTAMDMQYWEGEWVCADCGYIYNEQDCGGMRFEDQKRGFKCPQ
CSAPRRRFAKKVGDKIGVTNDGGDAPILLFSIVGGLAVIGFGIYAALSGE
GLEEGKGKN*
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mRNA from alignment at scaffold_9:81407..83548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4582 ID=mRNA_4582|Name=jgi.p|Nanoce1779_2|670382|organism=Nannochloropsis oceanica|type=mRNA|length=2142bp|location=Sequence derived from alignment at scaffold_9:81407..83548- (Nannochloropsis oceanica)
CTCGCTCGCCCACCACCGAAGCCATGCTTATATATTTTTTTTGGGGGGGA
TAAGGCTGTGGGAGGGAGGGGAGGGGAGTGTGGGATAAGCGCTGCAGCCA
GCAAGGCAGGGAAAATAAATCTGTCGGGGTGAGATCGCGCTTGTTTTAAC
GAACATGTAACGAGGGGAACGATACATAGTAAATGTGAGATGTCAAGGCA
GTGAATTTCGACAATCATCATGTAGAACAATGAAGGCGAAACGTGAAGCG
ACGATTGCCGTGTCTGCCTTGGTCAGGTGATGCCTAAGACACCAGCAAAA
AGCCAAGGGATCCTCCATATGCACACCTTGTACAGTTTCGACCTTGTCCA
CACCGGAAATATTACCTACATAGACATGCCCAGCCCGTGCCTATGTGCGT
CTTTTTAATTCCCGCCGTGTCCTGCTCATCGTGTGCTTTTGCGAAATACT
TGGCTGTGACGGACCCGTCTTCGGGCTTGGACAGCGACAGCTCATCAGCA
AGCGACGCATCGACGTAATTGACATCCCCGCTCCACAAAAAACTCCCCAG
ACTCTTACCACATCTCCCAGAGGCTTGACCTAGTATACCATGCTCAGCGC
TGTAGCTAGGCACCGCGCCATGTGTCAGCTCCGACATACAGCTCTCTTGT
AGCCTCCACCTCACCACCACCTCCCTCCATCCCCTCACCATACATCACGC
AACACACGACACAACAGCTCATCCATTAAAATAAAACAATGGCTCGCCAC
GCCACTTCTTCCCTTCTGACCCTCCTCTGCCTCGCTCTGCTGGCTGTGTC
CTCCTTCGCCTTCATGCCTATGCGCCCTTCCCTCTCCTTGAGCCGAATGA
AGGCTGCTTCTCTCTCCGCCCCGTCTTCCCGTGGCACCCGCAATGGCCGC
TCTAAGGGCCTGACGGCCATGGATATGCAGTATTGGGAAGGAGAGTGGGT
GTGCGCGGACTGCGGCTACATATACAACGAGCAGGTGAGAGGAGGGACAT
GTGAGAGAGGGAGAAGAGAGGGGAATGAATGTAACGAGGGGTCTCGTCTT
CGTCTTCCGTGCATGACTGCTCACACTTCCTCCCTCTCTCCTTCCCTCCC
TCCTTTCCTCCCTCCCTCCCTCCTATCCCACAGGACTGCGGTGGCATGCG
CTTTGAGGACCAAAAGAGGGGATTTAAGTGCCCTCAATGCTCAGCACCTC
GGCGTCGGTTTGCCAAGAAGGTGGGGGACAAGATCGGTGTGACGAACGAT
GGAGGCGACGCCCCTATCCTCCTCTTCTCGATTGTGGGGGGCTTGGCCGT
GATTGGCTTCGGGATCTATGCGGCCTTGTCTGGGGTACGTTGGATCATTT
AATGGTTTATATGATCATATATATAGATAGATCGCTTGCGAGTAATCCCT
TATCCTTTCCTTTCAACGCGCACTCTCATTTATCACTTGTCGTCCCTTCC
TTCCCTCCCTCCCTACCTCCCTCCTGCAGATTTAAATTCCGTCATGCTGG
AGAAGGAGAGATTCTCGTGCTACCCCACGCATGCCGCCCCTCCCTTCCTC
CCTTCCTCCCTCCCTCCCTCCCTCCCGTCTGGATGGCAAGGAAGGGTTGG
AGGAGGGAAAGGGTAAGAATTAGGGCGGGAGTGTGAAGGTGAGGAAAGCA
GATACAATGATGAATGATCACGGAAAGAAAGAGAGGGACTGGAAGTAAAA
GAAATATTTTTAAAAACAGACAGAGAGAGAGAGAGACACACACACACACA
CAGACAGACACACACACACTCGAGTACTAAGAGTGTGAGTGCAGTGAAGA
AGGAGAAAAAGAGGAAAGAAAGAAAGAAAAGGCGAAGGAGAATAAGGCGG
AGGAATAAGAAGGAGATGGTGATGATGAAAGAACGAGAAACATCACAGTG
GCCTGATACACGCATTTGGTGCTTCGTTTTAAAGTTATTTTCCTCCTTCT
CTCCCTCTCTCCCTCCTCCCTCTCTCTCTCCCTACACCGAAATGACCCGA
CTTCCCACTGGCGATGGCGAGCGAGACCTCCCTCCGTCTCTCCCTCCCCC
TCCCCCTCCTCGTGGACTGCTCCCGCCGCTGGGATGATACGCACTTTCCC
CTCTCACCAATCCAAACAACGCCAGCTCCACCTCCCCTCCCT
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Coding sequence (CDS) from alignment at scaffold_9:81407..83548-

>mRNA_4582 ID=mRNA_4582|Name=jgi.p|Nanoce1779_2|670382|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_9:81407..83548- (Nannochloropsis oceanica)
GAAGGGTTGGAGGAGGGAAAGGGTAAGAATTAGGACTGCGGTGGCATGCG
CTTTGAGGACCAAAAGAGGGGATTTAAGTGCCCTCAATGCTCAGCACCTC
GGCGTCGGTTTGCCAAGAAGGTGGGGGACAAGATCGGTGTGACGAACGAT
GGAGGCGACGCCCCTATCCTCCTCTTCTCGATTGTGGGGGGCTTGGCCGT
GATTGGCTTCGGGATCTATGCGGCCTTGTCTGGGATGGCTCGCCACGCCA
CTTCTTCCCTTCTGACCCTCCTCTGCCTCGCTCTGCTGGCTGTGTCCTCC
TTCGCCTTCATGCCTATGCGCCCTTCCCTCTCCTTGAGCCGAATGAAGGC
TGCTTCTCTCTCCGCCCCGTCTTCCCGTGGCACCCGCAATGGCCGCTCTA
AGGGCCTGACGGCCATGGATATGCAGTATTGGGAAGGAGAGTGGGTGTGC
GCGGACTGCGGCTACATATACAACGAGCAGGAAGGGTTGGAGGAGGGAAA
GGGTAAGAATTAGGACTGCGGTGGCATGCGCTTTGAGGACCAAAAGAGGG
GATTTAAGTGCCCTCAATGCTCAGCACCTCGGCGTCGGTTTGCCAAGAAG
GTGGGGGACAAGATCGGTGTGACGAACGATGGAGGCGACGCCCCTATCCT
CCTCTTCTCGATTGTGGGGGGCTTGGCCGTGATTGGCTTCGGGATCTATG
CGGCCTTGTCTGGGATGGCTCGCCACGCCACTTCTTCCCTTCTGACCCTC
CTCTGCCTCGCTCTGCTGGCTGTGTCCTCCTTCGCCTTCATGCCTATGCG
CCCTTCCCTCTCCTTGAGCCGAATGAAGGCTGCTTCTCTCTCCGCCCCGT
CTTCCCGTGGCACCCGCAATGGCCGCTCTAAGGGCCTGACGGCCATGGAT
ATGCAGTATTGGGAAGGAGAGTGGGTGTGCGCGGACTGCGGCTACATATA
CAACGAGCAGGAAGGGTTGGAGGAGGGAAAGGGTAAGAATTAGGACTGCG
GTGGCATGCGCTTTGAGGACCAAAAGAGGGGATTTAAGTGCCCTCAATGC
TCAGCACCTCGGCGTCGGTTTGCCAAGAAGGTGGGGGACAAGATCGGTGT
GACGAACGATGGAGGCGACGCCCCTATCCTCCTCTTCTCGATTGTGGGGG
GCTTGGCCGTGATTGGCTTCGGGATCTATGCGGCCTTGTCTGGGATGGCT
CGCCACGCCACTTCTTCCCTTCTGACCCTCCTCTGCCTCGCTCTGCTGGC
TGTGTCCTCCTTCGCCTTCATGCCTATGCGCCCTTCCCTCTCCTTGAGCC
GAATGAAGGCTGCTTCTCTCTCCGCCCCGTCTTCCCGTGGCACCCGCAAT
GGCCGCTCTAAGGGCCTGACGGCCATGGATATGCAGTATTGGGAAGGAGA
GTGGGTGTGCGCGGACTGCGGCTACATATACAACGAGCAG
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Synonyms
Publications