jgi.p|Nanoce1779_2|587045, mRNA_4580 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587045
Unique NamemRNA_4580
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1025
Alignment locationscaffold_9:74411..76253 -

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Properties
Property NameValue
TranscriptId587131
TrackFilteredModels2
ProteinId587045
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:74411..76253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587045gene_4580Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587045mRNA_4580-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4580CDS_4580Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4580 ID=mRNA_4580|Name=jgi.p|Nanoce1779_2|587045|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
AGCACTTACCACAGACACGTACATGCCCAAGAGACCGAAACATACACAGC
TATCACTTTAATCGACCAGACACCAAGCAATTCCGCACATGAGAAGAAAA
GGAATGGGCCGTTCTTCACGGTCGACACCTTTCCTCTCACCCTCCTTCCT
CCTCCTCCAACTCCTCTTCGTTGTCTCCCTCCTCCTCCTTCCCCTTGGTG
GTGAAAGCGACGGCATCACCATCACAAGGGACGACGACGATGTTCAGGAA
GAAGCAGGGCGAGCGGGAATGGAGGAGGCAACGAAGGAGGAGGAGGGGAA
GCAACAGCGACTAGAGCAACGTCAGAAGCAGCGGCGGAAGAAAGACGACA
AGTCCGATCTATTTTTATATCAACGGTCAAGACGCCAGGCGGATTTGATC
GAGGACGGGTACGCGTGTTTCGTGACGGGGGAATGCGCGGCCTGCTCGGC
GGATGAAATGAGTGAGCCCTATTGTCAAGAAAGCAAACGCCGGGCCGAGG
TGACCTGCGAAAGGGAAGAGAACATCCACGGTGCCAAGCAGATCAAGGCC
ATAACCATATTTGATGCCTGTACCCACACCCCTTCCGACGATCTAACGGA
CGTCTTGCGTTTCCAAGCCCTCATGGCCATCGTGGGGGGACTCGCCCTGT
ACGGTGCACGACATCAGAAGTTGAAGCACTTGACGCTCTATGAAAGGAGG
GCAGGCGTGAGGAGATAGAAACGAGACACGGATTCCTCCCTTCCTTCCCC
CCTTCCCTTCTTCCCTTCCTGAGGGGGAAGGCTCTGCCTGTGGTGCCCGC
CAGCAATGATGCCCAAAATGGGAGCAAGGGACATGTGGTAGATGGATGGA
GTACGACAAACACCTCTAGTGCGTAGTTGGGGTGGTGGGATTTTATATAG
AAGGACGGCGTGATCGAGGAGGGGAGAAGAGAGGGAAGGAGGGAAGGAAG
GAGGGAAACTTCCTCTATCCTTGCCTACTGACCCGTGGCACAAGACACCT
GAAGGTGCGATCTGGGTATTGTGTG
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protein sequence of jgi.p|Nanoce1779_2|587045

>mRNA_4580-protein ID=mRNA_4580-protein|Name=jgi.p|Nanoce1779_2|587045|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MRRKGMGRSSRSTPFLSPSFLLLQLLFVVSLLLLPLGGESDGITITRDDD
DVQEEAGRAGMEEATKEEEGKQQRLEQRQKQRRKKDDKSDLFLYQRSRRQ
ADLIEDGYACFVTGECAACSADEMSEPYCQESKRRAEVTCEREENIHGAK
QIKAITIFDACTHTPSDDLTDVLRFQALMAIVGGLALYGARHQKLKHLTL
YERRAGVRR*
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mRNA from alignment at scaffold_9:74411..76253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4580 ID=mRNA_4580|Name=jgi.p|Nanoce1779_2|587045|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp|location=Sequence derived from alignment at scaffold_9:74411..76253- (Nannochloropsis oceanica)
AGCACTTACCACAGACACGTACATGCCCAAGAGACCGAAACATACACAGC
TATCACTTTAATCGACCAGGTGAGTTCCTGCTCGCCCGAGTTTCTTTCAG
TTTCAGCGATTGCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCT
CCCTCCCCTGCTTTGTACCGTACCCACCAACCCCACACAACCCCCAAAGC
TCGGGTACACGCTTTTTGATTGTATTGGCACATAGTGCCAACCATGATTC
CCCTATTCGAGAACAATTGCTTCCCCTCTCGCCTTGTCTTGCTCCCTTTC
CCCTCTTTCAGACGCATAAGAAGGGGAGGCTTGGCCCCCAGCACCAACGT
CACTTGTCCTCCTCTTCTATATCATGTATCATTCCTTTAACCCTTTCCTC
TCCTCAATCCTCATCTTCGCTGTCAGTCCAGACACCAAGCAATTCCGCAC
ATGAGAAGAAAAGGAATGGGCCGTTCTTCACGGTCGACACCTTTCCTCTC
ACCCTCCTTCCTCCTCCTCCAACTCCTCTTCGTTGTCTCCCTCCTCCTCC
TTCCCCTTGGTGGTGAAAGCGACGGCATCACCATCACAAGGGACGACGAC
GATGTTCAGGAAGAAGCAGGGCGAGCGGGAATGGAGGAGGCAACGAAGGA
GGAGGAGGGGAAGCAACAGCGACTAGAGCAACGTCAGAAGCAGCGGCGGA
AGAAAGACGACAAGTCCGATCTATTTTTATATCAACGGTCAAGACGCCAG
GCGGATTTGATCGAGGACGGGTACGCGTGTTTCGTGACGGGGGAATGCGC
GGCCTGCTCGGCGGATGAAATGGTGAGGCAGAGAGGAGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGGAGAGGGAATGGGTATGCAGACTTTA
CATTCGTTCATCTTTTGATGCACACATGAATGCATGTAATTGACACATGA
ATGCATGTGATTGGAACAAAGGAGGATAGGAGGGAGTACAGGGAGGAAGA
GAAGTAGGACTACTTTCATTGCACCGTCATCTGATCTGTATTCTTCGTGT
TGTTTTTAAATATTTGAATATGGTCACAATTATACTAGTACTCTAAACCC
TAATTAGAATTTTATTGACATTTTTCACAATTATAAATCGTCACACTATA
ATCACAACAGAGTGAGCCCTATTGTCAAGAAAGCAAACGCCGGGCCGAGG
TGACCTGCGAAAGGGAAGAGAACATCCACGGTGGTACGTGCTTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCACTCCTTCCTAT
TTCAAACCCTTCCCTCCCTCCAAACCTCCCTCCCCACCTCATTCCCCGCA
GCCAAGCAGATCAAGGCCATAACCATATTTGATGCCTGTACCCACACCCC
TTCCGACGATCTAACGGACGTCTTGCGTTTCCAAGCCCTCATGGCCATCG
TGGGGGGACTCGCCCTGTACGGTGCACGACATCAGAAGTTGAAGCACTTG
ACGCTCTATGAAAGGAGGGCAGGCGTGAGGAGATAGAAACGAGACACGGA
TTCCTCCCTTCCTTCCCCCCTTCCCTTCTTCCCTTCCTGAGGGGGAAGGC
TCTGCCTGTGGTGCCCGCCAGCAATGATGCCCAAAATGGGAGCAAGGGAC
ATGTGGTAGATGGATGGAGTACGACAAACACCTCTAGTGCGTAGTTGGGG
TGGTGGGATTTTATATAGAAGGACGGCGTGATCGAGGAGGGGAGAAGAGA
GGGAAGGAGGGAAGGAAGGAGGGAAACTTCCTCTATCCTTGCCTACTGAC
CCGTGGCACAAGACACCTGAAGGTGCGATCTGGGTATTGTGTG
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Coding sequence (CDS) from alignment at scaffold_9:74411..76253-

>mRNA_4580 ID=mRNA_4580|Name=jgi.p|Nanoce1779_2|587045|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_9:74411..76253- (Nannochloropsis oceanica)
CCAAGCAGATCAAGGCCATAACCATATTTGATGCCTGTACCCACACCCCT
TCCGACGATCTAACGGACGTCTTGCGTTTCCAAGCCCTCATGGCCATCGT
GGGGGGACTCGCCCTGTACGGTGCACGACATCAGAAGTTGAAGCACTTGA
CGCTCTATGAAAGGAGGGCAGGCGTGAGGAGATAGAGTGAGCCCTATTGT
CAAGAAAGCAAACGCCGGGCCGAGGTGACCTGCGAAAGGGAAGAGAACAT
CCACGGTGATGAGAAGAAAAGGAATGGGCCGTTCTTCACGGTCGACACCT
TTCCTCTCACCCTCCTTCCTCCTCCTCCAACTCCTCTTCGTTGTCTCCCT
CCTCCTCCTTCCCCTTGGTGGTGAAAGCGACGGCATCACCATCACAAGGG
ACGACGACGATGTTCAGGAAGAAGCAGGGCGAGCGGGAATGGAGGAGGCA
ACGAAGGAGGAGGAGGGGAAGCAACAGCGACTAGAGCAACGTCAGAAGCA
GCGGCGGAAGAAAGACGACAAGTCCGATCTATTTTTATATCAACGGTCAA
GACGCCAGGCGGATTTGATCGAGGACGGGTACGCGTGTTTCGTGACGGGG
GAATGCGCGGCCTGCTCGGCGGATGAAATGCCAAGCAGATCAAGGCCATA
ACCATATTTGATGCCTGTACCCACACCCCTTCCGACGATCTAACGGACGT
CTTGCGTTTCCAAGCCCTCATGGCCATCGTGGGGGGACTCGCCCTGTACG
GTGCACGACATCAGAAGTTGAAGCACTTGACGCTCTATGAAAGGAGGGCA
GGCGTGAGGAGATAGAGTGAGCCCTATTGTCAAGAAAGCAAACGCCGGGC
CGAGGTGACCTGCGAAAGGGAAGAGAACATCCACGGTGATGAGAAGAAAA
GGAATGGGCCGTTCTTCACGGTCGACACCTTTCCTCTCACCCTCCTTCCT
CCTCCTCCAACTCCTCTTCGTTGTCTCCCTCCTCCTCCTTCCCCTTGGTG
GTGAAAGCGACGGCATCACCATCACAAGGGACGACGACGATGTTCAGGAA
GAAGCAGGGCGAGCGGGAATGGAGGAGGCAACGAAGGAGGAGGAGGGGAA
GCAACAGCGACTAGAGCAACGTCAGAAGCAGCGGCGGAAGAAAGACGACA
AGTCCGATCTATTTTTATATCAACGGTCAAGACGCCAGGCGGATTTGATC
GAGGACGGGTACGCGTGTTTCGTGACGGGGGAATGCGCGGCCTGCTCGGC
GGATGAAATGCCAAGCAGATCAAGGCCATAACCATATTTGATGCCTGTAC
CCACACCCCTTCCGACGATCTAACGGACGTCTTGCGTTTCCAAGCCCTCA
TGGCCATCGTGGGGGGACTCGCCCTGTACGGTGCACGACATCAGAAGTTG
AAGCACTTGACGCTCTATGAAAGGAGGGCAGGCGTGAGGAGATAGAGTGA
GCCCTATTGTCAAGAAAGCAAACGCCGGGCCGAGGTGACCTGCGAAAGGG
AAGAGAACATCCACGGTGATGAGAAGAAAAGGAATGGGCCGTTCTTCACG
GTCGACACCTTTCCTCTCACCCTCCTTCCTCCTCCTCCAACTCCTCTTCG
TTGTCTCCCTCCTCCTCCTTCCCCTTGGTGGTGAAAGCGACGGCATCACC
ATCACAAGGGACGACGACGATGTTCAGGAAGAAGCAGGGCGAGCGGGAAT
GGAGGAGGCAACGAAGGAGGAGGAGGGGAAGCAACAGCGACTAGAGCAAC
GTCAGAAGCAGCGGCGGAAGAAAGACGACAAGTCCGATCTATTTTTATAT
CAACGGTCAAGACGCCAGGCGGATTTGATCGAGGACGGGTACGCGTGTTT
CGTGACGGGGGAATGCGCGGCCTGCTCGGCGGATGAAATG
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Synonyms
Publications