jgi.p|Nanoce1779_2|636793, mRNA_458 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636793
Unique Name	mRNA_458
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1281
Alignment location	scaffold_3:1119116..1120396 +

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Properties


Property Name	Value
TranscriptId	636879
Track	FilteredModels2
ProteinId	636793

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1119116..1120396 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636793	gene_458	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636793	mRNA_458-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_458	CDS_458	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1119116..1120396+
coding sequence from alignment at scaffold_3:1119116..1120396+

mRNA sequence

>mRNA_458 ID=mRNA_458|Name=jgi.p|Nanoce1779_2|636793|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
ATGCCTGCTGCGTCACAAGGAGGAGCAGAAGCAGAACCAGTGGTAGCAGC
TGTAGAGGAAGGGGAGGACGCAGGAGGAGCATACAAATGCGCCCCCTGCG
ACAAGGCCTTCCAAACCGAATCTCAACATGCCGCGCACATCTCTGCCCAC
GAAGAATGCCACTACCCAACTTGTACTTTTCAAGGCTCGCGGCAAGTGGT
GGGAGGTCACTATAGAGTAGCGCACGGCAAATATCGTGGAAACGGATTCC
GTGTGCTCAAGGTGGAAGGGAGGAGTTTCAGGATTTTGGTTGGGAATGCA
CCGGAGGAGGTAGAGCAGTGGAGGGAGGATCGACGCAAGAATTTCCCGAC
GGCCGAGAATGTGGCGAAGCGAAGGATGGAGACGCGAGGTGGAAGGGGAG
GAAGAGGGGGAGGGGGAAAGAAGAGGCCCAGGGCGGAGGAGGTGGACGAA
GGGAGGGGAGGGAGTAAGCAGGCACGGGCGGAGTGCGGAGGGGGTTTGTT
GGGGTTTGGGGAGGCGTATGCGAGCAAGGGAGAGGGAGAACAAGAGGTAC
TAGGGAATGAAGAGATACCGACAGTGGTCCGAACAGCGGTGGAGAAGGAG
GCGGACGTGGCAATGCGTACTTCGTTGTTGTATGGTGTTTGTCGTGCTTA
TTTAAGGAATCAGTGTCCGCTGAGCGCGGCGAGGTGTCGATACCGACACG
GGCCCACCAAGGGAGGAGGAGGGTTGATGTATTGTCGGTTTTACACCAAG
CCGGGGGGTGGGTGTCATCATGGAGAGGGCTGCCAGTTCGTTCACGATCA
GTCCTTGAAGGAGGAGTTGGAACGGTGGGTGGTGGAAAGGAGGGCGCAGA
AGAAGGAGGAGAGGGAGGCCGAAGTTGCAGAGGGAGAGATGGAGTGCGGA
ACGAAACGGCCTGGAAAGACGATCAAACAGCAGAAGCAGCAGCAGCAGCA
GCAGTCTACGGCTGGGACGGCAGCGGCGACGGGGCCTTCAAGAGAGCTGA
CGTTGTTGAAGAGGCTCTTGGGGATGGAGGTTGAGAAGGAGACGAACTTG
GTTCTGGGTTGTATTCGATATTTGGTAGAGGAAAATTTCTTCAAGAATAA
AACGTCGCCTGTATCGTCGTCGGTAGTTTCTAGGTCTTCGTTGTCACCTG
TGTCGCAAACGTCAGTTGCGGGTGTGATGAGAGAGGGAGGGGAAGAGGAA
GGAGAGGGCGTGATAGTTGACGAGGCGGAAGGAGAAGGAGCAGTCAAGGA
GCTCGTCTACAAGACAGCGGTGATAGCATGA

protein sequence of jgi.p|Nanoce1779_2|636793

>mRNA_458-protein ID=mRNA_458-protein|Name=jgi.p|Nanoce1779_2|636793|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MPAASQGGAEAEPVVAAVEEGEDAGGAYKCAPCDKAFQTESQHAAHISAH
EECHYPTCTFQGSRQVVGGHYRVAHGKYRGNGFRVLKVEGRSFRILVGNA
PEEVEQWREDRRKNFPTAENVAKRRMETRGGRGGRGGGGKKRPRAEEVDE
GRGGSKQARAECGGGLLGFGEAYASKGEGEQEVLGNEEIPTVVRTAVEKE
ADVAMRTSLLYGVCRAYLRNQCPLSAARCRYRHGPTKGGGGLMYCRFYTK
PGGGCHHGEGCQFVHDQSLKEELERWVVERRAQKKEEREAEVAEGEMECG
TKRPGKTIKQQKQQQQQQSTAGTAAATGPSRELTLLKRLLGMEVEKETNL
VLGCIRYLVEENFFKNKTSPVSSSVVSRSSLSPVSQTSVAGVMREGGEEE
GEGVIVDEAEGEGAVKELVYKTAVIA*

mRNA from alignment at scaffold_3:1119116..1120396+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_458 ID=mRNA_458|Name=jgi.p|Nanoce1779_2|636793|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp|location=Sequence derived from alignment at scaffold_3:1119116..1120396+ (Nannochloropsis oceanica)
ATGCCTGCTGCGTCACAAGGAGGAGCAGAAGCAGAACCAGTGGTAGCAGC
TGTAGAGGAAGGGGAGGACGCAGGAGGAGCATACAAATGCGCCCCCTGCG
ACAAGGCCTTCCAAACCGAATCTCAACATGCCGCGCACATCTCTGCCCAC
GAAGAATGCCACTACCCAACTTGTACTTTTCAAGGCTCGCGGCAAGTGGT
GGGAGGTCACTATAGAGTAGCGCACGGCAAATATCGTGGAAACGGATTCC
GTGTGCTCAAGGTGGAAGGGAGGAGTTTCAGGATTTTGGTTGGGAATGCA
CCGGAGGAGGTAGAGCAGTGGAGGGAGGATCGACGCAAGAATTTCCCGAC
GGCCGAGAATGTGGCGAAGCGAAGGATGGAGACGCGAGGTGGAAGGGGAG
GAAGAGGGGGAGGGGGAAAGAAGAGGCCCAGGGCGGAGGAGGTGGACGAA
GGGAGGGGAGGGAGTAAGCAGGCACGGGCGGAGTGCGGAGGGGGTTTGTT
GGGGTTTGGGGAGGCGTATGCGAGCAAGGGAGAGGGAGAACAAGAGGTAC
TAGGGAATGAAGAGATACCGACAGTGGTCCGAACAGCGGTGGAGAAGGAG
GCGGACGTGGCAATGCGTACTTCGTTGTTGTATGGTGTTTGTCGTGCTTA
TTTAAGGAATCAGTGTCCGCTGAGCGCGGCGAGGTGTCGATACCGACACG
GGCCCACCAAGGGAGGAGGAGGGTTGATGTATTGTCGGTTTTACACCAAG
CCGGGGGGTGGGTGTCATCATGGAGAGGGCTGCCAGTTCGTTCACGATCA
GTCCTTGAAGGAGGAGTTGGAACGGTGGGTGGTGGAAAGGAGGGCGCAGA
AGAAGGAGGAGAGGGAGGCCGAAGTTGCAGAGGGAGAGATGGAGTGCGGA
ACGAAACGGCCTGGAAAGACGATCAAACAGCAGAAGCAGCAGCAGCAGCA
GCAGTCTACGGCTGGGACGGCAGCGGCGACGGGGCCTTCAAGAGAGCTGA
CGTTGTTGAAGAGGCTCTTGGGGATGGAGGTTGAGAAGGAGACGAACTTG
GTTCTGGGTTGTATTCGATATTTGGTAGAGGAAAATTTCTTCAAGAATAA
AACGTCGCCTGTATCGTCGTCGGTAGTTTCTAGGTCTTCGTTGTCACCTG
TGTCGCAAACGTCAGTTGCGGGTGTGATGAGAGAGGGAGGGGAAGAGGAA
GGAGAGGGCGTGATAGTTGACGAGGCGGAAGGAGAAGGAGCAGTCAAGGA
GCTCGTCTACAAGACAGCGGTGATAGCATGA

Coding sequence (CDS) from alignment at scaffold_3:1119116..1120396+

>mRNA_458 ID=mRNA_458|Name=jgi.p|Nanoce1779_2|636793|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at scaffold_3:1119116..1120396+ (Nannochloropsis oceanica)
ATGCCTGCTGCGTCACAAGGAGGAGCAGAAGCAGAACCAGTGGTAGCAGC
TGTAGAGGAAGGGGAGGACGCAGGAGGAGCATACAAATGCGCCCCCTGCG
ACAAGGCCTTCCAAACCGAATCTCAACATGCCGCGCACATCTCTGCCCAC
GAAGAATGCCACTACCCAACTTGTACTTTTCAAGGCTCGCGGCAAGTGGT
GGGAGGTCACTATAGAGTAGCGCACGGCAAATATCGTGGAAACGGATTCC
GTGTGCTCAAGGTGGAAGGGAGGAGTTTCAGGATTTTGGTTGGGAATGCA
CCGGAGGAGGTAGAGCAGTGGAGGGAGGATCGACGCAAGAATTTCCCGAC
GGCCGAGAATGTGGCGAAGCGAAGGATGGAGACGCGAGGTGGAAGGGGAG
GAAGAGGGGGAGGGGGAAAGAAGAGGCCCAGGGCGGAGGAGGTGGACGAA
GGGAGGGGAGGGAGTAAGCAGGCACGGGCGGAGTGCGGAGGGGGTTTGTT
GGGGTTTGGGGAGGCGTATGCGAGCAAGGGAGAGGGAGAACAAGAGGTAC
TAGGGAATGAAGAGATACCGACAGTGGTCCGAACAGCGGTGGAGAAGGAG
GCGGACGTGGCAATGCGTACTTCGTTGTTGTATGGTGTTTGTCGTGCTTA
TTTAAGGAATCAGTGTCCGCTGAGCGCGGCGAGGTGTCGATACCGACACG
GGCCCACCAAGGGAGGAGGAGGGTTGATGTATTGTCGGTTTTACACCAAG
CCGGGGGGTGGGTGTCATCATGGAGAGGGCTGCCAGTTCGTTCACGATCA
GTCCTTGAAGGAGGAGTTGGAACGGTGGGTGGTGGAAAGGAGGGCGCAGA
AGAAGGAGGAGAGGGAGGCCGAAGTTGCAGAGGGAGAGATGGAGTGCGGA
ACGAAACGGCCTGGAAAGACGATCAAACAGCAGAAGCAGCAGCAGCAGCA
GCAGTCTACGGCTGGGACGGCAGCGGCGACGGGGCCTTCAAGAGAGCTGA
CGTTGTTGAAGAGGCTCTTGGGGATGGAGGTTGAGAAGGAGACGAACTTG
GTTCTGGGTTGTATTCGATATTTGGTAGAGGAAAATTTCTTCAAGAATAA
AACGTCGCCTGTATCGTCGTCGGTAGTTTCTAGGTCTTCGTTGTCACCTG
TGTCGCAAACGTCAGTTGCGGGTGTGATGAGAGAGGGAGGGGAAGAGGAA
GGAGAGGGCGTGATAGTTGACGAGGCGGAAGGAGAAGGAGCAGTCAAGGA
GCTCGTCTACAAGACAGCGGTGATAGCATGA

Synonyms

Publications