jgi.p|Nanoce1779_2|629840, mRNA_4575 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629840
Unique NamemRNA_4575
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length745
Alignment locationscaffold_9:40072..41221 +

Link to JBrowse

Properties
Property NameValue
TranscriptId629926
TrackFilteredModels2
ProteinId629840
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:40072..41221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629840gene_4575Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629840mRNA_4575-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4575CDS_4575Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4575 ID=mRNA_4575|Name=jgi.p|Nanoce1779_2|629840|organism=Nannochloropsis oceanica|type=mRNA|length=745bp
AGGAGGAGGGAGGGGTGGAGGGAGTGCTGGCACCTTTGACCCCAGAGGAG
CAAGAATCCCTCGGCTTCTTGGACTTCACCGAGAGGGCCTGGGCACTGAT
GGAGCTGGCGTACTTTTCTAATGACGGGCAGGGCATGGGCGGCTGGGAGG
TGGTGGCGTGGGCTCAGCCCTACTGGGGAGGAGGGGGGGACTGGAGGGAG
GGAGGGAGGGATGGCGGGCCGGAGGCGCCGTGGAGGAGGGCGTGGGAGTT
GGTGCTGATGGGGGAGATGGAAGAGGCAGCCAGCGTGCTGGACGGGGTGG
GAGTGTGGGAGGAAGGGAGGGCGGGGGGGAGGGATTGGTTCTGGCCGAGT
TGGGATTTGAAGGAGAGGTTACTAGGGTTGTTAATAAGCTGCCCGTTGGT
GAGGGCCATGGCGGTACTGAGGGAGGAGGAGGCAGTGGAGGAGGAAGCGG
AGGAGGAGATGGCAAGGAGAGCGGCAGCACGGGGGAGGTTGGGGGTGGAT
TTGCCCCTCCCCTCCGATAGCGGCTTCGAGGCGACCCGACTGGACGTGGC
TCGCTCCCTGGCCCGCGAGGGCGAACGCTGGCGGCGAGACATTCTGCGGG
AACTAACCTCCCTCCCTCCCCTCCCTTCCTCCTCCTCTTCTTCCTCCTCC
TCCTCACGAACTCGATCCTCCGCGGCCTCTTCATTCTCCCCCTCGACTTT
GATGGGTGTGAGACGGTTGTTGGAAATGTTGGCGGGGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|629840

>mRNA_4575-protein ID=mRNA_4575-protein|Name=jgi.p|Nanoce1779_2|629840|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MELAYFSNDGQGMGGWEVVAWAQPYWGGGGDWREGGRDGGPEAPWRRAWE
LVLMGEMEEAASVLDGVGVWEEGRAGGRDWFWPSWDLKERLLGLLISCPL
VRAMAVLREEEAVEEEAEEEMARRAAARGRLGVDLPLPSDSGFEATRLDV
ARSLAREGERWRRDILRELTSLPPLPSSSSSSSSSSRTRSSAASSFSPST
LMGVRRLLEMLAGRE
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mRNA from alignment at scaffold_9:40072..41221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4575 ID=mRNA_4575|Name=jgi.p|Nanoce1779_2|629840|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_9:40072..41221+ (Nannochloropsis oceanica)
AGGAGGAGGGAGGGGTGGAGGGAGTGCTGGCACCTTTGACCCCAGAGGTG
CGTGTTGCGGTGGTGGCAGTGACACGCTCTATTCCATCGCCTTCTATTTG
GTTTTTGCCCCTCTCCTCTCGCTTTCACCCTTTTCATTCGTCCGTTTCTA
CCTTTCTCCAAGGACATGAATGACCCGACTTTATTTGGAACGCCAGGACG
CGGGTGGAGCCGGTGTTGTTCAGTCACGGCGGACAAAGGCCTGCAATACT
TACTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTTCTTTG
TCTAGGAGCAAGAATCCCTCGGCTTCTTGGACTTCACCGAGAGGGCCTGG
GCACTGATGGAGCTGGCGTACTTTTCTAATGACGGGCAGGGCATGGGCGG
CTGGGAGGTGGTGGCGTGGGCTCAGCCCTACTGGGGAGGAGGGGGGGACT
GGAGGGAGGGAGGGAGGGATGGCGGGCCGGAGGCGCCGTGGAGGAGGGCG
TGGGAGTTGGTGCTGATGGGGGAGATGGAAGAGGCAGCCAGCGTGCTGGA
CGGGGTGGGAGTGTGGGAGGAAGGGAGGGCGGGGGGGAGGGATTGGTTCT
GGCCGAGTTGGGATTTGAAGGAGAGGTTACTAGGGTTGTTAATAAGCTGC
CCGTTGGTGAGGGCCATGGCGGTACTGAGGGAGGAGGAGGCAGTGGAGGA
GGAAGCGGAGGAGGAGATGGCAAGGAGAGCGGCAGCACGGGGGAGGTTGG
GGGTGGATTTGGTGAGTGGAGGGGAGGGAAGGAGGGAGGGAGAGAGCGAA
TGAGGGAGGGAGGGAGGGAGAAGTAGTATTCACGAGGGAAGCGCCTTGGA
AAGAGCGGAGACTCACAGTCTCACATCGCCTCCCTCCCTCCCTTTCTCCC
TCCCTCAGCCCCTCCCCTCCGATAGCGGCTTCGAGGCGACCCGACTGGAC
GTGGCTCGCTCCCTGGCCCGCGAGGGCGAACGCTGGCGGCGAGACATTCT
GCGGGAACTAACCTCCCTCCCTCCCCTCCCTTCCTCCTCCTCTTCTTCCT
CCTCCTCCTCACGAACTCGATCCTCCGCGGCCTCTTCATTCTCCCCCTCG
ACTTTGATGGGTGTGAGACGGTTGTTGGAAATGTTGGCGGGGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_9:40072..41221+

>mRNA_4575 ID=mRNA_4575|Name=jgi.p|Nanoce1779_2|629840|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_9:40072..41221+ (Nannochloropsis oceanica)
ATGGAGCTGGCGTACTTTTCTAATGACGGGCAGGGCATGGGCGGCTGGGA
GGTGGTGGCGTGGGCTCAGCCCTACTGGGGAGGAGGGGGGGACTGGAGGG
AGGGAGGGAGGGATGGCGGGCCGGAGGCGCCGTGGAGGAGGGCGTGGGAG
TTGGTGCTGATGGGGGAGATGGAAGAGGCAGCCAGCGTGCTGGACGGGGT
GGGAGTGTGGGAGGAAGGGAGGGCGGGGGGGAGGGATTGGTTCTGGCCGA
GTTGGGATTTGAAGGAGAGGTTACTAGGGTTGTTAATAAGCTGCCCGTTG
GTGAGGGCCATGGCGGTACTGAGGGAGGAGGAGGCAGTGGAGGAGGAAGC
GGAGGAGGAGATGGCAAGGAGAGCGGCAGCACGGGGGAGGTTGGGGGTGG
ATTTGCCCCTCCCCTCCGATAGCGGCTTCGAGGCGACCCGACTGGACGTG
GCTCGCTCCCTGGCCCGCGAGGGCGAACGCTGGCGGCGAGACATTCTGCG
GGAACTAACCTCCCTCCCTCCCCTCCCTTCCTCCTCCTCTTCTTCCTCCT
CCTCCTCACGAACTCGATCCTCCGCGGCCTCTTCATTCTCCCCCTCGACT
TTGATGGGTGTGAGACGGTTGTTGGAAATGTTGGCGGGGAGGGAGATGGA
GCTGGCGTACTTTTCTAATGACGGGCAGGGCATGGGCGGCTGGGAGGTGG
TGGCGTGGGCTCAGCCCTACTGGGGAGGAGGGGGGGACTGGAGGGAGGGA
GGGAGGGATGGCGGGCCGGAGGCGCCGTGGAGGAGGGCGTGGGAGTTGGT
GCTGATGGGGGAGATGGAAGAGGCAGCCAGCGTGCTGGACGGGGTGGGAG
TGTGGGAGGAAGGGAGGGCGGGGGGGAGGGATTGGTTCTGGCCGAGTTGG
GATTTGAAGGAGAGGTTACTAGGGTTGTTAATAAGCTGCCCGTTGGTGAG
GGCCATGGCGGTACTGAGGGAGGAGGAGGCAGTGGAGGAGGAAGCGGAGG
AGGAGATGGCAAGGAGAGCGGCAGCACGGGGGAGGTTGGGGGTGGATTTG
CCCCTCCCCTCCGATAGCGGCTTCGAGGCGACCCGACTGGACGTGGCTCG
CTCCCTGGCCCGCGAGGGCGAACGCTGGCGGCGAGACATTCTGCGGGAAC
TAACCTCCCTCCCTCCCCTCCCTTCCTCCTCCTCTTCTTCCTCCTCCTCC
TCACGAACTCGATCCTCCGCGGCCTCTTCATTCTCCCCCTCGACTTTGAT
GGGTGTGAGACGGTTGTTGGAAATGTTGGCGGGGAGGGAG
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Synonyms
Publications