jgi.p|Nanoce1779_2|554466, mRNA_4574 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554466
Unique NamemRNA_4574
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1003
Alignment locationscaffold_9:36852..38360 +

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Properties
Property NameValue
TranscriptId554552
TrackFilteredModels2
ProteinId554466
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:36852..38360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554466gene_4574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554466mRNA_4574-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4574CDS_4574Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4574 ID=mRNA_4574|Name=jgi.p|Nanoce1779_2|554466|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp
CAGGCTACGGAAGCATAGGAAGCAGCGCGCGGACCCAGCGAGTGTAGAAG
GCAGGGCGTGGAAGGCAGGGCAGTACCACAAACTCAGCAACAATCCCAGC
CGCAGCAAGCCCCTTGTTCTTTGGAGCAGCGGAGCGGACAGTTGCAGCAG
CAGCAGCAGTGGCGCGTGAAGCACATAGGGTCATTTATAGACACACACGC
AATTAGATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAATCATCTT
GCTGCATGATGCCGAGGGTGGGATCGTTACAGTGGAGACACGGACCGGCG
AATTATACCGTGGCCTGCTTGATGAGGCAGAAGATAATATGAATTTGATC
ATGAGAGATTCAACCAAGACGAATGTTCATGGCAAGGAGAGCCGGGTGGA
TCTGGTGTACATCAAGGGGGCCAATGTCAATTATATCATCCTTCCCGACA
TGCTTAAACGGGCTCCCATGTTCAAGCGCATCAAGGTCTGGAAGAAATAC
CACGGTAATGTGCCCGAGCTCGGGGCCGGCGTGCGAGGCCAAGCCGCCGT
CATCATGCAGAAATCGCAGGCAGGAGCAGGTCGAGGGAGGGGGGGAGGAG
GACCACAGGGAATGGGCGGGCCGATGGGAGGGAGGGGGGGAGGAGGGGGG
GGAGGACCGGTGTTGATGCCGGGAGGAGGAGGGGTGGGGAGTGGGAGTTT
CGGCGGGGTGGGAGGAGGAGGAGGAGGGAGGGGAACGTTTGGGGGCATGG
CGCCACCACCGCCGTTTATGGGGGGAGGGATGCCGCCGCCAACGCAGCAA
CAGCAACGGCCGTATTAACTCAGATGTGAGAGAGAGGGGGAGGGAAGGGG
GGCGAAGAGTCCGATACGCGATGACGATAGGGGTAAAGAAATCGATTAGG
GCATTGAAAGATGTGTGTGGAGGGTTGGAACGTGTCTTACTCCTTCTTCG
ATAGGGGTCTCCTCCTTTTTGGTTTCAATATGAATCTGTTCCCCGGAAAG
AGG
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protein sequence of jgi.p|Nanoce1779_2|554466

>mRNA_4574-protein ID=mRNA_4574-protein|Name=jgi.p|Nanoce1779_2|554466|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MSVTGKGGVGIPIILLHDAEGGIVTVETRTGELYRGLLDEAEDNMNLIMR
DSTKTNVHGKESRVDLVYIKGANVNYIILPDMLKRAPMFKRIKVWKKYHG
NVPELGAGVRGQAAVIMQKSQAGAGRGRGGGGPQGMGGPMGGRGGGGGGG
PVLMPGGGGVGSGSFGGVGGGGGGRGTFGGMAPPPPFMGGGMPPPTQQQQ
RPY*
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mRNA from alignment at scaffold_9:36852..38360+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4574 ID=mRNA_4574|Name=jgi.p|Nanoce1779_2|554466|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at scaffold_9:36852..38360+ (Nannochloropsis oceanica)
CAGGCTACGGAAGCATAGGAAGCAGCGCGCGGACCCAGCGAGTGTAGAAG
GCAGGGCGTGGAAGGCAGGGCAGTACCACAAACTCAGCAACAATCCCAGC
CGCAGCAAGCCCCTTGTTCTTTGGAGCAGCGGAGCGGACAGTTGCAGCAG
CAGCAGCAGTGGCGCGTGAAGCACATAGGGTCATTTATAGACACACACGC
AATTAGATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAATCATCTT
GCTGCATGATGCCGAGGTAAAATGGGAGGCCTAAAGGGAGGGAAGCGATG
AGGAGGATGCTTGTGTCCCTGCATAGAAGCTCTGTGCAGATGTCCACAGG
ACGAACAGAGATGCGTTGCACTCACTGCTGCAAGAGAGGGCATAAAAATC
GAAGACATTCGCAGCAAGTAAACCCATCGTACCATACCCACCAAATCATC
CTCCCTCCTACCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCTCGTCC
AGGGTGGGATCGTTACAGTGGAGACACGGACCGGCGAATTATACCGTGGC
CTGCTTGATGAGGCAGAAGATAATATGAATTTGATCATGAGAGATTCAAC
CAAGACGAATGTTCATGGCAAGGAGAGCCGGGTGGATCTGGTGTACATCA
AGGGGGCCAATGTGAGCAGGGAGAGAGGGAGGGAGGGTATAGGTGCTCGC
TGATCGATCTTGCTTACATCTCACATGTCTGATTCAGCTTTAACTCGCCC
TCCCTCCTTCCCTCCCTCTCTAACTAGGTCAATTATATCATCCTTCCCGA
CATGCTTAAACGGGCTCCCATGTTCAAGCGCATCAAGGTAGGGAGGGGTG
GAGGGATGGAAGGAGAGGGGGAGACTAGGGAATAACGACAGATGCGAGAT
GATGATAGGAGAGTAGGAGCATTGAAATGATTCATTCTCACTTCTCACTC
CTCCACCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCCCCAGGTCTGGAAG
AAATACCACGGTAATGTGCCCGAGCTCGGGGCCGGCGTGCGAGGCCAAGC
CGCCGTCATCATGCAGAAATCGCAGGCAGGAGCAGGTCGAGGGAGGGGGG
GAGGAGGACCACAGGGAATGGGCGGGCCGATGGGAGGGAGGGGGGGAGGA
GGGGGGGGAGGACCGGTGTTGATGCCGGGAGGAGGAGGGGTGGGGAGTGG
GAGTTTCGGCGGGGTGGGAGGAGGAGGAGGAGGGAGGGGAACGTTTGGGG
GCATGGCGCCACCACCGCCGTTTATGGGGGGAGGGATGCCGCCGCCAACG
CAGCAACAGCAACGGCCGTATTAACTCAGATGTGAGAGAGAGGGGGAGGG
AAGGGGGGCGAAGAGTCCGATACGCGATGACGATAGGGGTAAAGAAATCG
ATTAGGGCATTGAAAGATGTGTGTGGAGGGTTGGAACGTGTCTTACTCCT
TCTTCGATAGGGGTCTCCTCCTTTTTGGTTTCAATATGAATCTGTTCCCC
GGAAAGAGG
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Coding sequence (CDS) from alignment at scaffold_9:36852..38360+

>mRNA_4574 ID=mRNA_4574|Name=jgi.p|Nanoce1779_2|554466|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_9:36852..38360+ (Nannochloropsis oceanica)
ATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAATCATCTTGCTGCA
TGATGCCGAGGGTGGGATCGTTACAGTGGAGACACGGACCGGCGAATTAT
ACCGTGGCCTGCTTGATGAGGCAGAAGATAATATGAATTTGATCATGAGA
GATTCAACCAAGACGAATGTTCATGGCAAGGAGAGCCGGGTGGATCTGGT
GTACATCAAGGGGGCCAATGTCAATTATATCATCCTTCCCGACATGCTTA
AACGGGCTCCCATGTTCAAGCGCATCAAGGTCTGGAAGAAATACCACGGT
AATGTGCCCGAGCTCGGGGCCGGCGTGCGAGGCCAAGCCGCCGTCATCAT
GCAGAAATCGCAGGCAGGAGCAGGTCGAGGGAGGGGGGGAGGAGGACCAC
AGGGAATGGGCGGGCCGATGGGAGGGAGGGGGGGAGGAGGGGGGGGAGGA
CCGGTGTTGATGCCGGGAGGAGGAGGGGTGGGGAGTGGGAGTTTCGGCGG
GGTGGGAGGAGGAGGAGGAGGGAGGGGAACGTTTGGGGGCATGGCGCCAC
CACCGCCGTTTATGGGGGGAGGGATGCCGCCGCCAACGCAGCAACAGCAA
CGGCCGTATTAAATGTCAGTCACAGGCAAGGGCGGGGTGGGCATCCCAAT
CATCTTGCTGCATGATGCCGAGGGTGGGATCGTTACAGTGGAGACACGGA
CCGGCGAATTATACCGTGGCCTGCTTGATGAGGCAGAAGATAATATGAAT
TTGATCATGAGAGATTCAACCAAGACGAATGTTCATGGCAAGGAGAGCCG
GGTGGATCTGGTGTACATCAAGGGGGCCAATGTCAATTATATCATCCTTC
CCGACATGCTTAAACGGGCTCCCATGTTCAAGCGCATCAAGGTCTGGAAG
AAATACCACGGTAATGTGCCCGAGCTCGGGGCCGGCGTGCGAGGCCAAGC
CGCCGTCATCATGCAGAAATCGCAGGCAGGAGCAGGTCGAGGGAGGGGGG
GAGGAGGACCACAGGGAATGGGCGGGCCGATGGGAGGGAGGGGGGGAGGA
GGGGGGGGAGGACCGGTGTTGATGCCGGGAGGAGGAGGGGTGGGGAGTGG
GAGTTTCGGCGGGGTGGGAGGAGGAGGAGGAGGGAGGGGAACGTTTGGGG
GCATGGCGCCACCACCGCCGTTTATGGGGGGAGGGATGCCGCCGCCAACG
CAGCAACAGCAACGGCCGTATTAAATGTCAGTCACAGGCAAGGGCGGGGT
GGGCATCCCAATCATCTTGCTGCATGATGCCGAGGGTGGGATCGTTACAG
TGGAGACACGGACCGGCGAATTATACCGTGGCCTGCTTGATGAGGCAGAA
GATAATATGAATTTGATCATGAGAGATTCAACCAAGACGAATGTTCATGG
CAAGGAGAGCCGGGTGGATCTGGTGTACATCAAGGGGGCCAATGTCAATT
ATATCATCCTTCCCGACATGCTTAAACGGGCTCCCATGTTCAAGCGCATC
AAGGTCTGGAAGAAATACCACGGTAATGTGCCCGAGCTCGGGGCCGGCGT
GCGAGGCCAAGCCGCCGTCATCATGCAGAAATCGCAGGCAGGAGCAGGTC
GAGGGAGGGGGGGAGGAGGACCACAGGGAATGGGCGGGCCGATGGGAGGG
AGGGGGGGAGGAGGGGGGGGAGGACCGGTGTTGATGCCGGGAGGAGGAGG
GGTGGGGAGTGGGAGTTTCGGCGGGGTGGGAGGAGGAGGAGGAGGGAGGG
GAACGTTTGGGGGCATGGCGCCACCACCGCCGTTTATGGGGGGAGGGATG
CCGCCGCCAACGCAGCAACAGCAACGGCCGTATTAAATGTCAGTCACAGG
CAAGGGCGGGGTGGGCATCCCAATCATCTTGCTGCATGATGCCGAGGGTG
GGATCGTTACAGTGGAGACACGGACCGGCGAATTATACCGTGGCCTGCTT
GATGAGGCAGAAGATAATATGAATTTGATCATGAGAGATTCAACCAAGAC
GAATGTTCATGGCAAGGAGAGCCGGGTGGATCTGGTGTACATCAAGGGGG
CCAATGTCAATTATATCATCCTTCCCGACATGCTTAAACGGGCTCCCATG
TTCAAGCGCATCAAGGTCTGGAAGAAATACCACGGTAATGTGCCCGAGCT
CGGGGCCGGCGTGCGAGGCCAAGCCGCCGTCATCATGCAGAAATCGCAGG
CAGGAGCAGGTCGAGGGAGGGGGGGAGGAGGACCACAGGGAATGGGCGGG
CCGATGGGAGGGAGGGGGGGAGGAGGGGGGGGAGGACCGGTGTTGATGCC
GGGAGGAGGAGGGGTGGGGAGTGGGAGTTTCGGCGGGGTGGGAGGAGGAG
GAGGAGGGAGGGGAACGTTTGGGGGCATGGCGCCACCACCGCCGTTTATG
GGGGGAGGGATGCCGCCGCCAACGCAGCAACAGCAACGGCCGTATTAA
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Synonyms
Publications