jgi.p|Nanoce1779_2|527666, mRNA_4572 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527666
Unique Name	mRNA_4572
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1227
Alignment location	scaffold_9:30930..32331 +

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Properties


Property Name	Value
TranscriptId	527752
Track	FilteredModels2
ProteinId	527666

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:30930..32331 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527666	gene_4572	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527666	mRNA_4572-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4572	CDS_4572	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:30930..32331+
coding sequence from alignment at scaffold_9:30930..32331+

mRNA sequence

>mRNA_4572 ID=mRNA_4572|Name=jgi.p|Nanoce1779_2|527666|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
ATGCCTTGGTGCTTCGCCCAGTGCGGCTGGGCCCTCGCGCTGATACTACT
GATTCTAACCGCTCTGGTTACGCAATGGGGTGCTAGCCTGCTCTTGCAAT
GCGCCGTCAAGGTTAGCGGAGAGCCCAGCGGGGGCGTCAGCATCAAACAG
GTTGCTATCATAGCATCACCTACTCTGGCCTCCCTGCCGGAAGTGGTGGT
GATAATTAATTGTTTGGGGTCCGCCATAAGCGCACTTGTGGTCTCCGGCT
TCCTGCTCCCCCGCACCTTCAGGAGCCTAGACTCGCTCCGCGAGAAATTT
CACAGGGACTTGATGGCTTCGATCGAGTGGAAAAATCTGCTTAAGGAAAG
AGTGCTGTGGATCTCCATCATCACGGCATGTGTGTTACCCTTGTGTTTTC
TCCGGGACATCACACCTCTCAAGTACACCGGCCTCGTCTCGCTGGTGGCG
GTGACCTTCGCCACGGTCGTCATGGCTTCGGCCTATTTCTCGCCCTCATT
CTTTGACACGTGTGAAGTTATGGGAAGAAGCCCTTGCGCTACGGATGTGC
ATGAAATGATATGCTGCTCTCATCTTTACTCGTCTCTTTCCATCCCCCTA
CACCACTACCAGGCGTCCATACCCGCGTTCTTCTTCAACTACTCCTGCAA
CTACCAACTGCTCACCGTGCACAATGCCCTGGCCATCAAGTCGACAAAGA
CGAGCAACTTGGCCATCGGAAACACGATGATCATCATCACGACCATCTAC
ATCGTATTGGGACTCACCACATACCGAACATTTGGCGCCGATTTGGAGTC
CAATTTTTTGGGGAACTACGGAAACAATGTTGTGATTGATCTAGTCCGCC
TCTTCATTATCCTCTCGGTGGCTCTCTTATTTCCGCTCACCATCTTTACG
GCGCGTGCCTCCGTCATGTCCATCCTGGGACCCGCGTACGTGACAAAATT
CAACAGCAAGCATGTTTTCTTTACCATATCACTCCTTCTTGTTGCCTTCG
CCTATGTGGTGGCGATTTCTGTGGCCAACCTCAATGTTATTTTGGGTGTC
GGTGGGGCCCTCTCCACCGTCCCCATCACTCTTGTCTTGCCTGGCAGCTA
CACTGCATCTTTGGCGGAAAAGGGGCCTGCGGGAGACGGCGATCGACGCA
AAGGACGGGTGGCCATGATCACTGGGTACGTACTGACGTTCCTTTGTTTG
TACGGAGCCTTGGCCATGCGCAATTAG

protein sequence of jgi.p|Nanoce1779_2|527666

>mRNA_4572-protein ID=mRNA_4572-protein|Name=jgi.p|Nanoce1779_2|527666|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MPWCFAQCGWALALILLILTALVTQWGASLLLQCAVKVSGEPSGGVSIKQ
VAIIASPTLASLPEVVVIINCLGSAISALVVSGFLLPRTFRSLDSLREKF
HRDLMASIEWKNLLKERVLWISIITACVLPLCFLRDITPLKYTGLVSLVA
VTFATVVMASAYFSPSFFDTCEVMGRSPCATDVHEMICCSHLYSSLSIPL
HHYQASIPAFFFNYSCNYQLLTVHNALAIKSTKTSNLAIGNTMIIITTIY
IVLGLTTYRTFGADLESNFLGNYGNNVVIDLVRLFIILSVALLFPLTIFT
ARASVMSILGPAYVTKFNSKHVFFTISLLLVAFAYVVAISVANLNVILGV
GGALSTVPITLVLPGSYTASLAEKGPAGDGDRRKGRVAMITGYVLTFLCL
YGALAMRN*

mRNA from alignment at scaffold_9:30930..32331+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4572 ID=mRNA_4572|Name=jgi.p|Nanoce1779_2|527666|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_9:30930..32331+ (Nannochloropsis oceanica)
ATGCCTTGGTGCTTCGCCCAGTGCGGCTGGGCCCTCGCGCTGATACTACT
GATTCTAACCGCTCTGGTTACGCAATGGGGTGCTAGCCTGCTCTTGCAAT
GCGCCGTCAAGGTTAGCGGAGAGCCCAGCGGGGGCGTCAGCATCAAACAG
GTTGCTATCATAGCATCACCTACTCTGGCCTCCCTGCCGGAAGTGGTGGT
GATAATTAATTGTTTGGGGTCCGCCATAAGCGCACTTGTGGTCTCCGGCT
TCCTGCTCCCCCGCACCTTCAGGAGCCTAGACTCGCTCCGCGAGAAATTT
CACAGGGACTTGATGGCTTCGATCGAGTGGAAAAATCTGCTTAAGGAAAG
AGTGCTGTGGATCTCCATCATCACGGCATGTGTGTTACCCTTGTGTTTTC
TCCGGGACATCACACCTCTCAAGTACACCGGCCTCGTCTCGCTGGTGGCG
GTGACCTTCGCCACGGTCGTCATGGCTTCGGCCTATTTCTCGCCCTCATT
CTTTGACACGTGTGAAGTTATGGGAAGAAGCCCTTGCGCTACGGATGTGG
TTGCCTTTCGCCTCGATAATGTAACAGGAGTACTGGTAAGAAGAAATCGA
GGATAGGCACATTTCTTCGTCCCTGTATGATGCGACTTCCAAAAGATGCA
TCTATGCTTATGTTATCCACGACCCCCTCACCCACGAGCGGAACAAGTCC
AACACCGAAAGCGTCGATTTGGAGCATGAAATGATATGCTGCTCTCATCT
TTACTCGTCTCTTTCCATCCCCCTACACCACTACCAGGCGTCCATACCCG
CGTTCTTCTTCAACTACTCCTGCAACTACCAACTGCTCACCGTGCACAAT
GCCCTGGCCATCAAGTCGACAAAGACGAGCAACTTGGCCATCGGAAACAC
GATGATCATCATCACGACCATCTACATCGTATTGGGACTCACCACATACC
GAACATTTGGCGCCGATTTGGAGTCCAATTTTTTGGGGAACTACGGAAAC
AATGTTGTGATTGATCTAGTCCGCCTCTTCATTATCCTCTCGGTGGCTCT
CTTATTTCCGCTCACCATCTTTACGGCGCGTGCCTCCGTCATGTCCATCC
TGGGACCCGCGTACGTGACAAAATTCAACAGCAAGCATGTTTTCTTTACC
ATATCACTCCTTCTTGTTGCCTTCGCCTATGTGGTGGCGATTTCTGTGGC
CAACCTCAATGTTATTTTGGGTGTCGGTGGGGCCCTCTCCACCGTCCCCA
TCACTCTTGTCTTGCCTGGCAGCTACACTGCATCTTTGGCGGAAAAGGGG
CCTGCGGGAGACGGCGATCGACGCAAAGGACGGGTGGCCATGATCACTGG
GTACGTACTGACGTTCCTTTGTTTGTACGGAGCCTTGGCCATGCGCAATT
AG

Coding sequence (CDS) from alignment at scaffold_9:30930..32331+

>mRNA_4572 ID=mRNA_4572|Name=jgi.p|Nanoce1779_2|527666|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_9:30930..32331+ (Nannochloropsis oceanica)
ATGCCTTGGTGCTTCGCCCAGTGCGGCTGGGCCCTCGCGCTGATACTACT
GATTCTAACCGCTCTGGTTACGCAATGGGGTGCTAGCCTGCTCTTGCAAT
GCGCCGTCAAGGTTAGCGGAGAGCCCAGCGGGGGCGTCAGCATCAAACAG
GTTGCTATCATAGCATCACCTACTCTGGCCTCCCTGCCGGAAGTGGTGGT
GATAATTAATTGTTTGGGGTCCGCCATAAGCGCACTTGTGGTCTCCGGCT
TCCTGCTCCCCCGCACCTTCAGGAGCCTAGACTCGCTCCGCGAGAAATTT
CACAGGGACTTGATGGCTTCGATCGAGTGGAAAAATCTGCTTAAGGAAAG
AGTGCTGTGGATCTCCATCATCACGGCATGTGTGTTACCCTTGTGTTTTC
TCCGGGACATCACACCTCTCAAGTACACCGGCCTCGTCTCGCTGGTGGCG
GTGACCTTCGCCACGGTCGTCATGGCTTCGGCCTATTTCTCGCCCTCATT
CTTTGACACGTGTGAAGTTATGGGAAGAAGCCCTTGCGCTACGGATGTGC
ATGAAATGATATGCTGCTCTCATCTTTACTCGTCTCTTTCCATCCCCCTA
CACCACTACCAGGCGTCCATACCCGCGTTCTTCTTCAACTACTCCTGCAA
CTACCAACTGCTCACCGTGCACAATGCCCTGGCCATCAAGTCGACAAAGA
CGAGCAACTTGGCCATCGGAAACACGATGATCATCATCACGACCATCTAC
ATCGTATTGGGACTCACCACATACCGAACATTTGGCGCCGATTTGGAGTC
CAATTTTTTGGGGAACTACGGAAACAATGTTGTGATTGATCTAGTCCGCC
TCTTCATTATCCTCTCGGTGGCTCTCTTATTTCCGCTCACCATCTTTACG
GCGCGTGCCTCCGTCATGTCCATCCTGGGACCCGCGTACGTGACAAAATT
CAACAGCAAGCATGTTTTCTTTACCATATCACTCCTTCTTGTTGCCTTCG
CCTATGTGGTGGCGATTTCTGTGGCCAACCTCAATGTTATTTTGGGTGTC
GGTGGGGCCCTCTCCACCGTCCCCATCACTCTTGTCTTGCCTGGCAGCTA
CACTGCATCTTTGGCGGAAAAGGGGCCTGCGGGAGACGGCGATCGACGCA
AAGGACGGGTGGCCATGATCACTGGGTACGTACTGACGTTCCTTTGTTTG
TACGGAGCCTTGGCCATGCGCAATTAGATGCCTTGGTGCTTCGCCCAGTG
CGGCTGGGCCCTCGCGCTGATACTACTGATTCTAACCGCTCTGGTTACGC
AATGGGGTGCTAGCCTGCTCTTGCAATGCGCCGTCAAGGTTAGCGGAGAG
CCCAGCGGGGGCGTCAGCATCAAACAGGTTGCTATCATAGCATCACCTAC
TCTGGCCTCCCTGCCGGAAGTGGTGGTGATAATTAATTGTTTGGGGTCCG
CCATAAGCGCACTTGTGGTCTCCGGCTTCCTGCTCCCCCGCACCTTCAGG
AGCCTAGACTCGCTCCGCGAGAAATTTCACAGGGACTTGATGGCTTCGAT
CGAGTGGAAAAATCTGCTTAAGGAAAGAGTGCTGTGGATCTCCATCATCA
CGGCATGTGTGTTACCCTTGTGTTTTCTCCGGGACATCACACCTCTCAAG
TACACCGGCCTCGTCTCGCTGGTGGCGGTGACCTTCGCCACGGTCGTCAT
GGCTTCGGCCTATTTCTCGCCCTCATTCTTTGACACGTGTGAAGTTATGG
GAAGAAGCCCTTGCGCTACGGATGTGCATGAAATGATATGCTGCTCTCAT
CTTTACTCGTCTCTTTCCATCCCCCTACACCACTACCAGGCGTCCATACC
CGCGTTCTTCTTCAACTACTCCTGCAACTACCAACTGCTCACCGTGCACA
ATGCCCTGGCCATCAAGTCGACAAAGACGAGCAACTTGGCCATCGGAAAC
ACGATGATCATCATCACGACCATCTACATCGTATTGGGACTCACCACATA
CCGAACATTTGGCGCCGATTTGGAGTCCAATTTTTTGGGGAACTACGGAA
ACAATGTTGTGATTGATCTAGTCCGCCTCTTCATTATCCTCTCGGTGGCT
CTCTTATTTCCGCTCACCATCTTTACGGCGCGTGCCTCCGTCATGTCCAT
CCTGGGACCCGCGTACGTGACAAAATTCAACAGCAAGCATGTTTTCTTTA
CCATATCACTCCTTCTTGTTGCCTTCGCCTATGTGGTGGCGATTTCTGTG
GCCAACCTCAATGTTATTTTGGGTGTCGGTGGGGCCCTCTCCACCGTCCC
CATCACTCTTGTCTTGCCTGGCAGCTACACTGCATCTTTGGCGGAAAAGG
GGCCTGCGGGAGACGGCGATCGACGCAAAGGACGGGTGGCCATGATCACT
GGGTACGTACTGACGTTCCTTTGTTTGTACGGAGCCTTGGCCATGCGCAA
TTAG

Synonyms

Publications