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Properties
| Property Name | Value |
|---|
| TranscriptId | 435798 |
| Track | FilteredModels2 |
| ProteinId | 435712 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:28901..30659 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4571 ID=mRNA_4571|Name=jgi.p|Nanoce1779_2|435712|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp
CTCGGCCAGCTCCTCTGCTTTATCCGTCTGCCGATATTGCACAGCCACAT
TCTCGCTTTCGTTGTGCTCGATGAGTTCGTACAAGTCGTCATGGAGGCGC
AAATTGCTGTGCGTTAGCAGAACCCCATAGATGAAGGACATTGTTCGGGG
ATGGTGGTAATGACGATGTGGTGGGTCGTCTTTGTCTCCCTCTTCCACGC
TGCCAGCCGCCTCCTGTATGGGTGCATGTGGAAATGTGGTTGTGTAACAT
GTCTATATCAAGTACACGACATGCTGCGCCAACCCTCCGGCTCTATCGCT
CGCTATGGGGCTTGACTGTTGACCCGAAATCTTCCTCCGCCACAACCTCC
CCCTCCTCGACCTCCTCCCCTAAACCTCCTCCCTGCCGCGGCATCAAGTT
TTTCCCTTCCCGGCAAGCTCTTTTGCGACACATCACCGGGGCAGGAAGAG
ACCGAGTGGGATCAAACGAAAGAGGGCGAAAGGGAGGGCTTTACCACGGG
ATTGAAGCCAGTTTGTGTGACTTGGGAAGCACAAAGGAGGAGAGGAGGGA
CATGGTGAGAATGTTGGAGGAGCATGGGCTAGACTTAATTATCGGCATCT
ACTCCTCCTGGGGGGACTACGAATGCCGCCACGACCACTACAAAGCCCCA
TCCCTCCACATCGCCCAGTTTCAATCACAGCTAGAGGAAGCTTTGGCCTT
GGGCCCTGTGCACGTGAATTCCCACACAGGGTGTGATGCGTGGAGAGAGG
ATAAAGACATAATGCCCTTCTTTGAGATGGTGTTGGAGGCCCAAAGAGCG
ATGGGAAGCGAGATCTCCATTAGTCATGAGACGCATCGGGGACGCCCCCT
CGGCAACCCTTTCCTGACCCTACGCCTTCTCCATGCCCTTCCTTCCCTCC
GCCTCACAGCCGACATTTCTCACTGGATGGTGGTGTGTGAGCGACTTTTG
GGAGGAAGGGAGGGAGGGAGAGAGGGGGAAGGGCTAGAGGAGGAGTTGCT
GCGGACAGTGGCAGGGAGGACGGACCACGTGCATGCCCGCAGAGGGAATG
CACAGAGCGCACAAGTGGTGATGAGGGGGAGAGGAGGAAGGAAGGAGGAT
GGGAAGGACAAGCGAAAGGAAGAAAGAGGGGAAAGGGAGGTGTTTGAGCG
TTTCTGGAGGTGGGTGCAAGAGGCAAAGAGGGAGAGAGGGAGGGGTGTCT
GGACGGTGACACCCGAATATGGGCCCGGATACGGAGGAGGAGGAGAGATG
GATGTGGATAAAGTGAATGAAGACATGGCAAGGTGGTTACGAACTAAATT
TGGCTCCATGTAGTTCTATGAATGAAATTCGAAAAAAAATGAATAACGGA
CGTGACATGCGGGC back to topprotein sequence of jgi.p|Nanoce1779_2|435712 >mRNA_4571-protein ID=mRNA_4571-protein|Name=jgi.p|Nanoce1779_2|435712|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MWLCNMSISSTRHAAPTLRLYRSLWGLTVDPKSSSATTSPSSTSSPKPPP
CRGIKFFPSRQALLRHITGAGRDRVGSNERGRKGGLYHGIEASLCDLGST
KEERRDMVRMLEEHGLDLIIGIYSSWGDYECRHDHYKAPSLHIAQFQSQL
EEALALGPVHVNSHTGCDAWREDKDIMPFFEMVLEAQRAMGSEISISHET
HRGRPLGNPFLTLRLLHALPSLRLTADISHWMVVCERLLGGREGGREGEG
LEEELLRTVAGRTDHVHARRGNAQSAQVVMRGRGGRKEDGKDKRKEERGE
REVFERFWRWVQEAKRERGRGVWTVTPEYGPGYGGGGEMDVDKVNEDMAR
WLRTKFGSM* back to topmRNA from alignment at scaffold_9:28901..30659- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4571 ID=mRNA_4571|Name=jgi.p|Nanoce1779_2|435712|organism=Nannochloropsis oceanica|type=mRNA|length=1759bp|location=Sequence derived from alignment at scaffold_9:28901..30659- (Nannochloropsis oceanica)
CTCGGCCAGCTCCTCTGCTTTATCCGTCTGCCGATATTGCACAGCCACAT
TCTCGCTTTCGTTGTGCTCGATGAGTTCGTACAAGTCGTCATGGAGGCGC
AAATTGCTGTGCGTTAGCAGAACCCCATAGATGAAGGACATTGTTCGGGG
ATGGTGGTAATGACGATGTGGTGGGTCGTCTTTGTCTCCCTCTTCCACGC
TGCCAGCCGCCTCCTGTATGGGTGCATGTGGAAATGTGGTTGTGTAGTGA
GTGTCTGGAGTAGGCGAGTGAGGGGTCGGGTATTTATCACAGAGAGACAT
TCTTTCGCACGTCGTAGCTCGCTTGAATCGTGTTGAGGTTGATCGAGCGG
GTGCAACTCTACTTCTTAAACTTACCACCCGACCCCGTGTTCTACGACAC
AGACATGTCTATATCAAGTACACGACATGCTGCGCCAACCCTCCGGCTCT
ATCGCTCGCTATGGGGCTTGACTGTTGACCCGAAATCTTCCTCCGCCACA
ACCTCCCCCTCCTCGACCTCCTCCCCTAAACCTCCTCCCTGCCGCGGCAT
CAAGTTTTTCCCTTCCCGGCAAGCTCTTTTGCGACACATCACCGGGGCAG
GAAGAGACCGAGTGGGATCAAACGAAAGAGGGCGAAAGGGAGGGCTTTAC
CACGGGATTGAAGCCAGTTTGTGTGACTTGGGAAGCACAAAGGAGGAGAG
GAGGGACATGGTGAGAATGTTGGAGGAGCATGGGCTAGACTTAATTATCG
GTAAGGAAAGTAGAGGAAGAGACAGGGAATGAACTGAGAGGAGCTTAATC
TCGGTGGAATGTTCGCTATTCCGGATGGTGTTTATAGTCCCGACTCGCTT
TCTGGTCCTACTTCCCTCGCTCCCTCCCTCCAGGCATCTACTCCTCCTGG
GGGGACTACGAATGCCGCCACGACCACTACAAAGCCCCATCCCTCCACAT
CGCCCAGTTTCAATCACAGCTAGAGGAAGCTTTGGCCTTGGGCCCTGTGC
ACGTGAATTCCCACACAGGGTGTGATGCGTGGAGAGAGGATAAAGACATA
ATGCCCTTCTTTGAGATGGTGTTGGAGGCCCAAAGAGCGATGGGAAGCGA
GGTAGGGGGATAGAACGGGGAGGAGATGAGAGAGAAGCCACATATGTTTA
AATATGACTGACGCTCTGATTCTAGCAACCGCTCCCTTCATCCTCACCAC
CATTCAGATCTCCATTAGTCATGAGACGCATCGGGGACGCCCCCTCGGCA
ACCCTTTCCTGACCCTACGCCTTCTCCATGCCCTTCCTTCCCTCCGCCTC
ACAGCCGACATTTCTCACTGGATGGTGGTGTGTGAGCGACTTTTGGGAGG
AAGGGAGGGAGGGAGAGAGGGGGAAGGGCTAGAGGAGGAGTTGCTGCGGA
CAGTGGCAGGGAGGACGGACCACGTGCATGCCCGCAGAGGGAATGCACAG
AGCGCACAAGTGGTGATGAGGGGGAGAGGAGGAAGGAAGGAGGATGGGAA
GGACAAGCGAAAGGAAGAAAGAGGGGAAAGGGAGGTGTTTGAGCGTTTCT
GGAGGTGGGTGCAAGAGGCAAAGAGGGAGAGAGGGAGGGGTGTCTGGACG
GTGACACCCGAATATGGGCCCGGATACGGAGGAGGAGGAGAGATGGATGT
GGATAAAGTGAATGAAGACATGGCAAGGTGGTTACGAACTAAATTTGGCT
CCATGTAGTTCTATGAATGAAATTCGAAAAAAAATGAATAACGGACGTGA
CATGCGGGC back to topCoding sequence (CDS) from alignment at scaffold_9:28901..30659- >mRNA_4571 ID=mRNA_4571|Name=jgi.p|Nanoce1779_2|435712|organism=Nannochloropsis oceanica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_9:28901..30659- (Nannochloropsis oceanica)
ATCTCCATTAGTCATGAGACGCATCGGGGACGCCCCCTCGGCAACCCTTT
CCTGACCCTACGCCTTCTCCATGCCCTTCCTTCCCTCCGCCTCACAGCCG
ACATTTCTCACTGGATGGTGGTGTGTGAGCGACTTTTGGGAGGAAGGGAG
GGAGGGAGAGAGGGGGAAGGGCTAGAGGAGGAGTTGCTGCGGACAGTGGC
AGGGAGGACGGACCACGTGCATGCCCGCAGAGGGAATGCACAGAGCGCAC
AAGTGGTGATGAGGGGGAGAGGAGGAAGGAAGGAGGATGGGAAGGACAAG
CGAAAGGAAGAAAGAGGGGAAAGGGAGGTGTTTGAGCGTTTCTGGAGGTG
GGTGCAAGAGGCAAAGAGGGAGAGAGGGAGGGGTGTCTGGACGGTGACAC
CCGAATATGGGCCCGGATACGGAGGAGGAGGAGAGATGGATGTGGATAAA
GTGAATGAAGACATGGCAAGGTGGTTACGAACTAAATTTGGCTCCATGTA
GGCATCTACTCCTCCTGGGGGGACTACGAATGCCGCCACGACCACTACAA
AGCCCCATCCCTCCACATCGCCCAGTTTCAATCACAGCTAGAGGAAGCTT
TGGCCTTGGGCCCTGTGCACGTGAATTCCCACACAGGGTGTGATGCGTGG
AGAGAGGATAAAGACATAATGCCCTTCTTTGAGATGGTGTTGGAGGCCCA
AAGAGCGATGGGAAGCGAGACATGTCTATATCAAGTACACGACATGCTGC
GCCAACCCTCCGGCTCTATCGCTCGCTATGGGGCTTGACTGTTGACCCGA
AATCTTCCTCCGCCACAACCTCCCCCTCCTCGACCTCCTCCCCTAAACCT
CCTCCCTGCCGCGGCATCAAGTTTTTCCCTTCCCGGCAAGCTCTTTTGCG
ACACATCACCGGGGCAGGAAGAGACCGAGTGGGATCAAACGAAAGAGGGC
GAAAGGGAGGGCTTTACCACGGGATTGAAGCCAGTTTGTGTGACTTGGGA
AGCACAAAGGAGGAGAGGAGGGACATGGTGAGAATGTTGGAGGAGCATGG
GCTAGACTTAATTATCGATGTGGTTGTGTAATCTCCATTAGTCATGAGAC
GCATCGGGGACGCCCCCTCGGCAACCCTTTCCTGACCCTACGCCTTCTCC
ATGCCCTTCCTTCCCTCCGCCTCACAGCCGACATTTCTCACTGGATGGTG
GTGTGTGAGCGACTTTTGGGAGGAAGGGAGGGAGGGAGAGAGGGGGAAGG
GCTAGAGGAGGAGTTGCTGCGGACAGTGGCAGGGAGGACGGACCACGTGC
ATGCCCGCAGAGGGAATGCACAGAGCGCACAAGTGGTGATGAGGGGGAGA
GGAGGAAGGAAGGAGGATGGGAAGGACAAGCGAAAGGAAGAAAGAGGGGA
AAGGGAGGTGTTTGAGCGTTTCTGGAGGTGGGTGCAAGAGGCAAAGAGGG
AGAGAGGGAGGGGTGTCTGGACGGTGACACCCGAATATGGGCCCGGATAC
GGAGGAGGAGGAGAGATGGATGTGGATAAAGTGAATGAAGACATGGCAAG
GTGGTTACGAACTAAATTTGGCTCCATGTAGGCATCTACTCCTCCTGGGG
GGACTACGAATGCCGCCACGACCACTACAAAGCCCCATCCCTCCACATCG
CCCAGTTTCAATCACAGCTAGAGGAAGCTTTGGCCTTGGGCCCTGTGCAC
GTGAATTCCCACACAGGGTGTGATGCGTGGAGAGAGGATAAAGACATAAT
GCCCTTCTTTGAGATGGTGTTGGAGGCCCAAAGAGCGATGGGAAGCGAGA
CATGTCTATATCAAGTACACGACATGCTGCGCCAACCCTCCGGCTCTATC
GCTCGCTATGGGGCTTGACTGTTGACCCGAAATCTTCCTCCGCCACAACC
TCCCCCTCCTCGACCTCCTCCCCTAAACCTCCTCCCTGCCGCGGCATCAA
GTTTTTCCCTTCCCGGCAAGCTCTTTTGCGACACATCACCGGGGCAGGAA
GAGACCGAGTGGGATCAAACGAAAGAGGGCGAAAGGGAGGGCTTTACCAC
GGGATTGAAGCCAGTTTGTGTGACTTGGGAAGCACAAAGGAGGAGAGGAG
GGACATGGTGAGAATGTTGGAGGAGCATGGGCTAGACTTAATTATCGATG
TGGTTGTGTAATCTCCATTAGTCATGAGACGCATCGGGGACGCCCCCTCG
GCAACCCTTTCCTGACCCTACGCCTTCTCCATGCCCTTCCTTCCCTCCGC
CTCACAGCCGACATTTCTCACTGGATGGTGGTGTGTGAGCGACTTTTGGG
AGGAAGGGAGGGAGGGAGAGAGGGGGAAGGGCTAGAGGAGGAGTTGCTGC
GGACAGTGGCAGGGAGGACGGACCACGTGCATGCCCGCAGAGGGAATGCA
CAGAGCGCACAAGTGGTGATGAGGGGGAGAGGAGGAAGGAAGGAGGATGG
GAAGGACAAGCGAAAGGAAGAAAGAGGGGAAAGGGAGGTGTTTGAGCGTT
TCTGGAGGTGGGTGCAAGAGGCAAAGAGGGAGAGAGGGAGGGGTGTCTGG
ACGGTGACACCCGAATATGGGCCCGGATACGGAGGAGGAGGAGAGATGGA
TGTGGATAAAGTGAATGAAGACATGGCAAGGTGGTTACGAACTAAATTTG
GCTCCATGTAGGCATCTACTCCTCCTGGGGGGACTACGAATGCCGCCACG
ACCACTACAAAGCCCCATCCCTCCACATCGCCCAGTTTCAATCACAGCTA
GAGGAAGCTTTGGCCTTGGGCCCTGTGCACGTGAATTCCCACACAGGGTG
TGATGCGTGGAGAGAGGATAAAGACATAATGCCCTTCTTTGAGATGGTGT
TGGAGGCCCAAAGAGCGATGGGAAGCGAGACATGTCTATATCAAGTACAC
GACATGCTGCGCCAACCCTCCGGCTCTATCGCTCGCTATGGGGCTTGACT
GTTGACCCGAAATCTTCCTCCGCCACAACCTCCCCCTCCTCGACCTCCTC
CCCTAAACCTCCTCCCTGCCGCGGCATCAAGTTTTTCCCTTCCCGGCAAG
CTCTTTTGCGACACATCACCGGGGCAGGAAGAGACCGAGTGGGATCAAAC
GAAAGAGGGCGAAAGGGAGGGCTTTACCACGGGATTGAAGCCAGTTTGTG
TGACTTGGGAAGCACAAAGGAGGAGAGGAGGGACATGGTGAGAATGTTGG
AGGAGCATGGGCTAGACTTAATTATCGATGTGGTTGTGTAATCTCCATTA
GTCATGAGACGCATCGGGGACGCCCCCTCGGCAACCCTTTCCTGACCCTA
CGCCTTCTCCATGCCCTTCCTTCCCTCCGCCTCACAGCCGACATTTCTCA
CTGGATGGTGGTGTGTGAGCGACTTTTGGGAGGAAGGGAGGGAGGGAGAG
AGGGGGAAGGGCTAGAGGAGGAGTTGCTGCGGACAGTGGCAGGGAGGACG
GACCACGTGCATGCCCGCAGAGGGAATGCACAGAGCGCACAAGTGGTGAT
GAGGGGGAGAGGAGGAAGGAAGGAGGATGGGAAGGACAAGCGAAAGGAAG
AAAGAGGGGAAAGGGAGGTGTTTGAGCGTTTCTGGAGGTGGGTGCAAGAG
GCAAAGAGGGAGAGAGGGAGGGGTGTCTGGACGGTGACACCCGAATATGG
GCCCGGATACGGAGGAGGAGGAGAGATGGATGTGGATAAAGTGAATGAAG
ACATGGCAAGGTGGTTACGAACTAAATTTGGCTCCATGTAGGCATCTACT
CCTCCTGGGGGGACTACGAATGCCGCCACGACCACTACAAAGCCCCATCC
CTCCACATCGCCCAGTTTCAATCACAGCTAGAGGAAGCTTTGGCCTTGGG
CCCTGTGCACGTGAATTCCCACACAGGGTGTGATGCGTGGAGAGAGGATA
AAGACATAATGCCCTTCTTTGAGATGGTGTTGGAGGCCCAAAGAGCGATG
GGAAGCGAGACATGTCTATATCAAGTACACGACATGCTGCGCCAACCCTC
CGGCTCTATCGCTCGCTATGGGGCTTGACTGTTGACCCGAAATCTTCCTC
CGCCACAACCTCCCCCTCCTCGACCTCCTCCCCTAAACCTCCTCCCTGCC
GCGGCATCAAGTTTTTCCCTTCCCGGCAAGCTCTTTTGCGACACATCACC
GGGGCAGGAAGAGACCGAGTGGGATCAAACGAAAGAGGGCGAAAGGGAGG
GCTTTACCACGGGATTGAAGCCAGTTTGTGTGACTTGGGAAGCACAAAGG
AGGAGAGGAGGGACATGGTGAGAATGTTGGAGGAGCATGGGCTAGACTTA
ATTATCGATGTGGTTGTGTA back to top
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