jgi.p|Nanoce1779_2|586993, mRNA_4570 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586993
Unique NamemRNA_4570
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length826
Alignment locationscaffold_9:27772..28724 +

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Properties
Property NameValue
TranscriptId587079
TrackFilteredModels2
ProteinId586993
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:27772..28724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586993gene_4570Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586993mRNA_4570-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4570CDS_4570Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4570 ID=mRNA_4570|Name=jgi.p|Nanoce1779_2|586993|organism=Nannochloropsis oceanica|type=mRNA|length=826bp
GGAGGGAGGGAGGGAGGGAGGGAAGATTCAGAAGGAGAATCCACGCGAGG
CTCGCGCTGCCACCTCACTCCCCCCCCTGTTTTTTATAATTTTATCCCTC
CTCACCGATTGAAGGCCATGGCACAATTCTGCTTCTCGAAGACCGACACG
TGCGTCTCGATCACCTTGAGCAGGCCGTCCACGTCGCCCTCATGCTGGTG
GAGGAGGGCAGCGATCGCCCGCCCGCCCAATGCCTTCTTTCCTCCTTCTC
CCCCTCCTCCTCCTCCTCTTTCACCTATTTGTATGGGTGTTATCGGTGAT
AACGGACTGGTGCTGCCGCTGCTATCACCCCTGCCACCTCTCCTTTCCCC
CTTCCCCTCATCTCCTTCGTTTGGCATCCGCTGTTCTTTTCTCTTGGCGT
GTGGAAAGGTTCTTAATTGTGGTGGTGGTATTGGCTGTGGTGCCTTGCTG
TTTTTAGCTTCTGACGGGGCTTTTGGAAAGGAGGAGGAGGGAGAGGAGGA
CGAGGGGGTAGTGGAGGAGGCGAGCTCGGGGTGTCCCTCCCTTCTTCTTC
TCCAAGAGAAGGATGACAATGAAGACGAGAGAAAGGAAAGGGTATCCACG
GCACCTATCCGCAATAGTAGCAAAAGCACAAGCCCAGCACTACAATGCGA
AGGCTTTCTCCACCGTCGTCTCCGCCGCCTTGTCTCCATGGCGACTGTGC
TTGTGTTGGATTGGGCGGTGTGGGCTTACAGGTGTACGCCGGCATGACCG
TCACGGTTGAATTGAAGTCCAGGCCGTTGAGGAACGGAGGGTGGTGGAAC
CGAGCGACTCATGGCTCCCTGTCTGT
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protein sequence of jgi.p|Nanoce1779_2|586993

>mRNA_4570-protein ID=mRNA_4570-protein|Name=jgi.p|Nanoce1779_2|586993|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MAQFCFSKTDTCVSITLSRPSTSPSCWWRRAAIARPPNAFFPPSPPPPPP
LSPICMGVIGDNGLVLPLLSPLPPLLSPFPSSPSFGIRCSFLLACGKVLN
CGGGIGCGALLFLASDGAFGKEEEGEEDEGVVEEASSGCPSLLLLQEKDD
NEDERKERVSTAPIRNSSKSTSPALQCEGFLHRRLRRLVSMATVLVLDWA
VWAYRCTPA*
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mRNA from alignment at scaffold_9:27772..28724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4570 ID=mRNA_4570|Name=jgi.p|Nanoce1779_2|586993|organism=Nannochloropsis oceanica|type=mRNA|length=953bp|location=Sequence derived from alignment at scaffold_9:27772..28724+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAAGATTCAGAAGGAGAATCCACGCGAGG
CTCGCGCTGCCACCTCACTCCCCCCCCTGTTTTTTATAATTTTATCCCTC
CTCACCGATTGAAGGCCATGGCACAATTCTGCTTCTCGAAGACCGACACG
TGCGTCTCGATCACCTTGAGCAGGCCGTCCACGTCGCCCTCATGCTGGTG
GAGGAGGGCAGCGATCGCCCGCCCGCCCAATGCCTTCTTTCCTCCTTCTC
CCCCTCCTCCTCCTCCTCTTTCACCTATTTGTATGGGTGTTATCGGTGAT
AACGGACTGGTGCTGCCGCTGCTATCACCCCTGCCACCTCTCCTTTCCCC
CTTCCCCTCATCTCCTTCGTTTGGCATCCGCTGTTCTTTTCTCTTGGCGT
GTGGAAAGGTTCTTAATTGTGGTGGTGGTATTGGCTGTGGTGCCTTGCTG
TTTTTAGCTTCTGACGGGGCTTTTGGAAAGGAGGAGGAGGGAGAGGAGGA
CGAGGGGGTAGTGGAGGAGGCGAGCTCGGGGTGTCCCTCCCTTCTTCTTC
TCCAAGAGAAGGATGACAATGAAGACGAGAGAAAGGAAAGGGTATCCACG
GCACCTGCAGAAGGTAGAGAAGGCAAGGCACATTTGTTTAGTGGACTTTA
TGCAGAAAAAGCGGGTGCGACATGGGAGGGAGGGAGGAAGGAGAGGAGGA
GAGGGTACGTGGGGGGAGGGATAAGCTTTACCTATCCGCAATAGTAGCAA
AAGCACAAGCCCAGCACTACAATGCGAAGGCTTTCTCCACCGTCGTCTCC
GCCGCCTTGTCTCCATGGCGACTGTGCTTGTGTTGGATTGGGCGGTGTGG
GCTTACAGGTGTACGCCGGCATGACCGTCACGGTTGAATTGAAGTCCAGG
CCGTTGAGGAACGGAGGGTGGTGGAACCGAGCGACTCATGGCTCCCTGTC
TGT
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Coding sequence (CDS) from alignment at scaffold_9:27772..28724+

>mRNA_4570 ID=mRNA_4570|Name=jgi.p|Nanoce1779_2|586993|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_9:27772..28724+ (Nannochloropsis oceanica)
ATGGCACAATTCTGCTTCTCGAAGACCGACACGTGCGTCTCGATCACCTT
GAGCAGGCCGTCCACGTCGCCCTCATGCTGGTGGAGGAGGGCAGCGATCG
CCCGCCCGCCCAATGCCTTCTTTCCTCCTTCTCCCCCTCCTCCTCCTCCT
CTTTCACCTATTTGTATGGGTGTTATCGGTGATAACGGACTGGTGCTGCC
GCTGCTATCACCCCTGCCACCTCTCCTTTCCCCCTTCCCCTCATCTCCTT
CGTTTGGCATCCGCTGTTCTTTTCTCTTGGCGTGTGGAAAGGTTCTTAAT
TGTGGTGGTGGTATTGGCTGTGGTGCCTTGCTGTTTTTAGCTTCTGACGG
GGCTTTTGGAAAGGAGGAGGAGGGAGAGGAGGACGAGGGGGTAGTGGAGG
AGGCGAGCTCGGGGTGTCCCTCCCTTCTTCTTCTCCAAGAGAAGGATGAC
AATGAAGACGAGAGAAAGGAAAGGGTATCCACGGCACCTATCCGCAATAG
TAGCAAAAGCACAAGCCCAGCACTACAATGCGAAGGCTTTCTCCACCGTC
GTCTCCGCCGCCTTGTCTCCATGGCGACTGTGCTTGTGTTGGATTGGGCG
GTGTGGGCTTACAGGTGTACGCCGGCATGAATGGCACAATTCTGCTTCTC
GAAGACCGACACGTGCGTCTCGATCACCTTGAGCAGGCCGTCCACGTCGC
CCTCATGCTGGTGGAGGAGGGCAGCGATCGCCCGCCCGCCCAATGCCTTC
TTTCCTCCTTCTCCCCCTCCTCCTCCTCCTCTTTCACCTATTTGTATGGG
TGTTATCGGTGATAACGGACTGGTGCTGCCGCTGCTATCACCCCTGCCAC
CTCTCCTTTCCCCCTTCCCCTCATCTCCTTCGTTTGGCATCCGCTGTTCT
TTTCTCTTGGCGTGTGGAAAGGTTCTTAATTGTGGTGGTGGTATTGGCTG
TGGTGCCTTGCTGTTTTTAGCTTCTGACGGGGCTTTTGGAAAGGAGGAGG
AGGGAGAGGAGGACGAGGGGGTAGTGGAGGAGGCGAGCTCGGGGTGTCCC
TCCCTTCTTCTTCTCCAAGAGAAGGATGACAATGAAGACGAGAGAAAGGA
AAGGGTATCCACGGCACCTATCCGCAATAGTAGCAAAAGCACAAGCCCAG
CACTACAATGCGAAGGCTTTCTCCACCGTCGTCTCCGCCGCCTTGTCTCC
ATGGCGACTGTGCTTGTGTTGGATTGGGCGGTGTGGGCTTACAGGTGTAC
GCCGGCATGA
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Synonyms
Publications