jgi.p|Nanoce1779_2|577372, mRNA_457 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577372
Unique NamemRNA_457
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length781
Alignment locationscaffold_3:1118798..1119578 -

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Properties
Property NameValue
TranscriptId577458
TrackFilteredModels2
ProteinId577372
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1118798..1119578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577372gene_457Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577372mRNA_457-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_457CDS_457Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_457 ID=mRNA_457|Name=jgi.p|Nanoce1779_2|577372|organism=Nannochloropsis oceanica|type=mRNA|length=781bp
TCCCTCCCCTCCCTTCGTCCACCTCCTCCGCCCTGGGCCTCTTCTTTCCC
CCTCCCCCTCTTCCTCCCCTTCCACCTCGCGTCTCCATCCTTCGCTTCGC
CACATTCTCGGCCGTCGGGAAATTCTTGCGTCGATCCTCCCTCCACTGCT
CTACCTCCTCCGGTGCATTCCCAACCAAAATCCTGAAACTCCTCCCTTCC
ACCTTGAGCACACGGAATCCGTTTCCACGATATTTGCCGTGCGCTACTCT
ATAGTGACCTCCCACCACTTGCCGCGAGCCTTGAAAAGTACAAGTTGGGT
AGTGGCATTCTTCGTGGGCAGAGATGTGCGCGGCATGTTGAGATTCGGTT
TGGAAGGCCTTGTCGCAGGGGGCGCATTTGTATGCTCCTCCTGCGTCCTC
CCCTTCCTCTACAGCTGCTACCACTGGTTCTGCTTCTGCTCCTCCTTGTG
ACGCAGCAGGCATTGTAAGTGCAGATGGGTGGATGCTTGGGCTACCAAAG
GGATTGCTACTACTGCTGCTGCTGTCGCTGTTGTCTCCTCGTCCTCCTTC
TCCTAATCGACCTCCTCTCTCGCCTCTGCCGGCCCAATCTCCGCGACCTC
CTCTTCCATTCCCCATGCCCCTTCCTCTCTCTCCTCTTCCTCCTCCCCGT
CCTCCCCCTCGCCTTCCTCTTTTTCCTCCTTCTCCCTTTCCTCCTCCTTG
CCACGCTTGCAAAGGCTGCTGCTGCTGCTGTTGCTGCGAGTCATATTGCT
GCTGCTGGGATTGAACTTGCTGGTTCTGTCG
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protein sequence of jgi.p|Nanoce1779_2|577372

>mRNA_457-protein ID=mRNA_457-protein|Name=jgi.p|Nanoce1779_2|577372|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MLGLPKGLLLLLLLSLLSPRPPSPNRPPLSPLPAQSPRPPLPFPMPLPLS
PLPPPRPPPRLPLFPPSPFPPPCHACKGCCCCCCCESYCCCWD*
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mRNA from alignment at scaffold_3:1118798..1119578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_457 ID=mRNA_457|Name=jgi.p|Nanoce1779_2|577372|organism=Nannochloropsis oceanica|type=mRNA|length=781bp|location=Sequence derived from alignment at scaffold_3:1118798..1119578- (Nannochloropsis oceanica)
TCCCTCCCCTCCCTTCGTCCACCTCCTCCGCCCTGGGCCTCTTCTTTCCC
CCTCCCCCTCTTCCTCCCCTTCCACCTCGCGTCTCCATCCTTCGCTTCGC
CACATTCTCGGCCGTCGGGAAATTCTTGCGTCGATCCTCCCTCCACTGCT
CTACCTCCTCCGGTGCATTCCCAACCAAAATCCTGAAACTCCTCCCTTCC
ACCTTGAGCACACGGAATCCGTTTCCACGATATTTGCCGTGCGCTACTCT
ATAGTGACCTCCCACCACTTGCCGCGAGCCTTGAAAAGTACAAGTTGGGT
AGTGGCATTCTTCGTGGGCAGAGATGTGCGCGGCATGTTGAGATTCGGTT
TGGAAGGCCTTGTCGCAGGGGGCGCATTTGTATGCTCCTCCTGCGTCCTC
CCCTTCCTCTACAGCTGCTACCACTGGTTCTGCTTCTGCTCCTCCTTGTG
ACGCAGCAGGCATTGTAAGTGCAGATGGGTGGATGCTTGGGCTACCAAAG
GGATTGCTACTACTGCTGCTGCTGTCGCTGTTGTCTCCTCGTCCTCCTTC
TCCTAATCGACCTCCTCTCTCGCCTCTGCCGGCCCAATCTCCGCGACCTC
CTCTTCCATTCCCCATGCCCCTTCCTCTCTCTCCTCTTCCTCCTCCCCGT
CCTCCCCCTCGCCTTCCTCTTTTTCCTCCTTCTCCCTTTCCTCCTCCTTG
CCACGCTTGCAAAGGCTGCTGCTGCTGCTGTTGCTGCGAGTCATATTGCT
GCTGCTGGGATTGAACTTGCTGGTTCTGTCG
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Coding sequence (CDS) from alignment at scaffold_3:1118798..1119578-

>mRNA_457 ID=mRNA_457|Name=jgi.p|Nanoce1779_2|577372|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_3:1118798..1119578- (Nannochloropsis oceanica)
ATGCTTGGGCTACCAAAGGGATTGCTACTACTGCTGCTGCTGTCGCTGTT
GTCTCCTCGTCCTCCTTCTCCTAATCGACCTCCTCTCTCGCCTCTGCCGG
CCCAATCTCCGCGACCTCCTCTTCCATTCCCCATGCCCCTTCCTCTCTCT
CCTCTTCCTCCTCCCCGTCCTCCCCCTCGCCTTCCTCTTTTTCCTCCTTC
TCCCTTTCCTCCTCCTTGCCACGCTTGCAAAGGCTGCTGCTGCTGCTGTT
GCTGCGAGTCATATTGCTGCTGCTGGGATTGA
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Synonyms
Publications