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Properties
| Property Name | Value |
|---|
| TranscriptId | 587063 |
| Track | FilteredModels2 |
| ProteinId | 586977 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:18931..21028 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4569 ID=mRNA_4569|Name=jgi.p|Nanoce1779_2|586977|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
AGGCCAGAGATGGGCGACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGGC
AGCGACACATCAACCTCTGGCCCGCCTATTGTCGCTCGATGACGTCCAAG
CAGCAGCCCGTCAAAGGCTACCCAAACCCATCTATGAGTATGTCGCGTCA
GGAAGTGAGGACGAGCAGACTCTATGGGAGAATCGACAAGGCTTTAAGCG
CGTGTTGCTATGCCCAAAGGTGGGGAGAGACGTGTCGAAGGTTGATATGA
GTCTCACGCTTTTTAAGGGTACCCCTCATGCACAAGACGCTTCTTTCCCC
GTCTTTTTCTCTCCCGCCGGGGTCCACTGCCTTATGCACCCGGAAGGAGA
AGCTGCTACGGCTCGAGCCGCCCAAAAGGAAGGCATCATCATGGGGGTCT
CGCAGCACGCCACCAAAAGCATGGAGGAAATCGCCCTCGCTGCCGCGTCT
GCACCTTCCACTTATCCGTCCTCAAACTCATTCCATTCCGCCTCTTCATC
CCTTTTGCCTCCTTCTTCACCATTGTGGTACCAGCTGTATATCCTGCACG
ACCGCTCCTTGACTGCCGCACTAGTCCGTCGCGCCCAAGCCGCCGGTTAT
AGGGCGCTTATTCTCACAGTTGACTCCCCCGTATTTGGGTTTCGGGAAGC
AGACTGGCGCAATGGCTTTGTGGGCCTGCCAGAGGGGATGGTGCTCGCAA
ATTACTCTACGAAACGCGGCTATGATGATCGGGAGAAGGGAGGCTGGGAT
CAGAATTCGGAAGCGCTCTTGGACCGAAGCAGCAGCTTCGCCCGGGACTT
GCCTTGGCTCCGCTCCATGACCTCATTGCCTATCATTGTTAAGGGCATCT
TGTCCCCTGAGGATGCCGTCGCGGCTGCAGAAGCAGGCTGCCACGGAATA
ATCGTCAGCAACCATGGTGGGAGACAATTAGACTCCTGCCTTTCCTCTAT
TGAAGCTCTTCCGGGCATTGCCGATGCCCTGCGCCAACAAGGGTTCCTAA
TCGACTCTGACCTTCGCGCAGGCGTTTCGCCTTTCCAATCACCAGACCGC
AAAGGTGAGAATAAAAGCATTGCATACCTTCACCCATATCTTGACGCATA
ATTAGACATTCTTCACACCCATAATATCCCTTTCCTTTTCTTCCTCTTGA
AGTGATCACCCTTCTACTTGACAGCGGGGTCCGACGAGGGACAGACGTCC
TGAAAGCCCTCGCACTCGGGGCCAGCGCTGTGTTGGTAGGCAAACCTATC
TTCTTCGGATTGGCGGTGGGAGGAGAGGAAGGGGTGAGACACGTGCTGAA
TATTTTGAGGAGGGAAACAGAAACCGCCATGGTGCTGTGTGGGTGCAAGA
ATCTGGGGGATATCCGACAGGAGGTAGTGAGGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|586977 >mRNA_4569-protein ID=mRNA_4569-protein|Name=jgi.p|Nanoce1779_2|586977|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MGDVKEQQAAALEAATHQPLARLLSLDDVQAAARQRLPKPIYEYVASGSE
DEQTLWENRQGFKRVLLCPKVGRDVSKVDMSLTLFKGTPHAQDASFPVFF
SPAGVHCLMHPEGEAATARAAQKEGIIMGVSQHATKSMEEIALAAASAPS
TYPSSNSFHSASSSLLPPSSPLWYQLYILHDRSLTAALVRRAQAAGYRAL
ILTVDSPVFGFREADWRNGFVGLPEGMVLANYSTKRGYDDREKGGWDQNS
EALLDRSSSFARDLPWLRSMTSLPIIVKGILSPEDAVAAAEAGCHGIIVS
NHGGRQLDSCLSSIEALPGIADALRQQGFLIDSDLRAGVSPFQSPDRKGE
NKSIAYLHPYLDA* back to topmRNA from alignment at scaffold_9:18931..21028- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4569 ID=mRNA_4569|Name=jgi.p|Nanoce1779_2|586977|organism=Nannochloropsis oceanica|type=mRNA|length=2098bp|location=Sequence derived from alignment at scaffold_9:18931..21028- (Nannochloropsis oceanica)
AGGCCAGAGATGGGCGACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGGC
AGCGACACATCAACCTCTGGCCCGCCTATTGTCGCTCGATGACGTCCAAG
CAGCAGCCCGTCAAAGGCTACCCAAGTACGTGGAAAGAGTGGGTTAGGGT
TAGGGAGGAAGGATTGGAACTGAGAGAGGTCAGAAATAAAGAAATTGCTT
AAAAGGCGGGAGGGCGCGTAGGTAGCGGCTGCCATCAGACTCAGAGACCA
AATCTTGACCTTGCTGCACATCCTTCTTCATTCACTCCCTCCCTGCCTCT
CTTCGCAGACCCATCTATGAGTATGTCGCGTCAGGAAGTGAGGACGAGCA
GACTCTATGGGAGAATCGACAAGGCTTTAAGCGCGTGTTGCTATGCCCAA
AGGTGGGGAGAGACGTGTCGAAGGTTGATATGAGGTAAGGACCACACTCA
AGGCACGCAGCAGCAGAAGACAATCGATACGCATTCTGTCACAAGTTCTG
CACCTCCTTAGAAAAAGAAGTTCTCCTAGGGGAGAGGTTTGAGAATCAAT
ACGAGCACTCAGCGAGCGATTCAAGGGATTGATATGCAAATCTAGACCCA
AGCTCTCAGCCTTTACTCTCGCCCCTCTTTTCATCCCACATCCCACCCTT
CCAGTCTCACGCTTTTTAAGGGTACCCCTCATGCACAAGACGCTTCTTTC
CCCGTCTTTTTCTCTCCCGCCGGGGTCCACTGCCTTATGCACCCGGAAGG
AGAAGCTGCTACGGCTCGAGCCGCCCAAAAGGAAGGCATCATCATGGGGG
TCTCGCAGCACGCCACCAAAAGCATGGAGGAAATCGCCCTCGCTGCCGCG
TCTGCACCTTCCACTTATCCGTCCTCAAACTCATTCCATTCCGCCTCTTC
ATCCCTTTTGCCTCCTTCTTCACCATTGTGGTACCAGCTGTATATCCTGC
ACGACCGCTCCTTGACTGCCGCACTAGTCCGTCGCGCCCAAGCCGCCGGT
TATAGGGCGCTTATTCTCACAGTTGACTCCCCCGTATTTGGGTTTCGGGA
AGCAGACTGGCGCAATGGCTTTGTGGGCCTGCCAGAGGGGATGGTGCTCG
CAAATTACTCTACGAAACGCGGCTATGATGATCGGGAGAAGGGAGGCTGG
GATCAGAATTCGGAAGGTGGGTGTCTTCGCTTTTATTATGCTCGTGTCTG
TGTCTGCCTTTTATTTTGCCTGCAAATCCCTCTCATCTTCCGCATAATTC
TTGTTTTATCTTTTTAAACTTCGACGTCATGGTATCGCACTCTCTGTACA
AGCATCAGAGTGCTTGGAACTTGGTTTTCGGCCTATTAACACAAAGATCC
ATCATGGTCATTTTCCCCCAGCGCTCTTGGACCGAAGCAGCAGCTTCGCC
CGGGACTTGCCTTGGCTCCGCTCCATGACCTCATTGCCTATCATTGTTAA
GGGCATCTTGTCCCCTGAGGATGCCGTCGCGGCTGCAGAAGCAGGTACAA
TGGGACGAATGATCAAAGGACGGGTGCTCCGTAGATTTGAATGAGCGCTC
TCTCACTCGGATCACCTATTTTTTCACGTTTCCTTGAATCTTTCTCAGGC
TGCCACGGAATAATCGTCAGCAACCATGGTGGGAGACAATTAGACTCCTG
CCTTTCCTCTATTGAAGCTCTTCCGGGCATTGCCGATGCCCTGCGCCAAC
AAGGGTTCCTAATCGACTCTGACCTTCGCGCAGGCGTTTCGCCTTTCCAA
TCACCAGACCGCAAAGGTGAGAATAAAAGCATTGCATACCTTCACCCATA
TCTTGACGCATAATTAGACATTCTTCACACCCATAATATCCCTTTCCTTT
TCTTCCTCTTGAAGTGATCACCCTTCTACTTGACAGCGGGGTCCGACGAG
GGACAGACGTCCTGAAAGCCCTCGCACTCGGGGCCAGCGCTGTGTTGGTA
GGCAAACCTATCTTCTTCGGATTGGCGGTGGGAGGAGAGGAAGGGGTGAG
ACACGTGCTGAATATTTTGAGGAGGGAAACAGAAACCGCCATGGTGCTGT
GTGGGTGCAAGAATCTGGGGGATATCCGACAGGAGGTAGTGAGGGAGG back to topCoding sequence (CDS) from alignment at scaffold_9:18931..21028- >mRNA_4569 ID=mRNA_4569|Name=jgi.p|Nanoce1779_2|586977|organism=Nannochloropsis oceanica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_9:18931..21028- (Nannochloropsis oceanica)
GCTGCCACGGAATAATCGTCAGCAACCATGGTGGGAGACAATTAGACTCC
TGCCTTTCCTCTATTGAAGCTCTTCCGGGCATTGCCGATGCCCTGCGCCA
ACAAGGGTTCCTAATCGACTCTGACCTTCGCGCAGGCGTTTCGCCTTTCC
AATCACCAGACCGCAAAGGTGAGAATAAAAGCATTGCATACCTTCACCCA
TATCTTGACGCATAACGCTCTTGGACCGAAGCAGCAGCTTCGCCCGGGAC
TTGCCTTGGCTCCGCTCCATGACCTCATTGCCTATCATTGTTAAGGGCAT
CTTGTCCCCTGAGGATGCCGTCGCGGCTGCAGAAGCAGTCTCACGCTTTT
TAAGGGTACCCCTCATGCACAAGACGCTTCTTTCCCCGTCTTTTTCTCTC
CCGCCGGGGTCCACTGCCTTATGCACCCGGAAGGAGAAGCTGCTACGGCT
CGAGCCGCCCAAAAGGAAGGCATCATCATGGGGGTCTCGCAGCACGCCAC
CAAAAGCATGGAGGAAATCGCCCTCGCTGCCGCGTCTGCACCTTCCACTT
ATCCGTCCTCAAACTCATTCCATTCCGCCTCTTCATCCCTTTTGCCTCCT
TCTTCACCATTGTGGTACCAGCTGTATATCCTGCACGACCGCTCCTTGAC
TGCCGCACTAGTCCGTCGCGCCCAAGCCGCCGGTTATAGGGCGCTTATTC
TCACAGTTGACTCCCCCGTATTTGGGTTTCGGGAAGCAGACTGGCGCAAT
GGCTTTGTGGGCCTGCCAGAGGGGATGGTGCTCGCAAATTACTCTACGAA
ACGCGGCTATGATGATCGGGAGAAGGGAGGCTGGGATCAGAATTCGGAAG
ACCCATCTATGAGTATGTCGCGTCAGGAAGTGAGGACGAGCAGACTCTAT
GGGAGAATCGACAAGGCTTTAAGCGCGTGTTGCTATGCCCAAAGGTGGGG
AGAGACGTGTCGAAGGTTGATATGAGATGGGCGACGTTAAGGAGCAGCAA
GCAGCAGCGCTCGAGGCAGCGACACATCAACCTCTGGCCCGCCTATTGTC
GCTCGATGACGTCCAAGCAGCAGCCCGTCAAAGGCTACCCAAGCTGCCAC
GGAATAATCGTCAGCAACCATGGTGGGAGACAATTAGACTCCTGCCTTTC
CTCTATTGAAGCTCTTCCGGGCATTGCCGATGCCCTGCGCCAACAAGGGT
TCCTAATCGACTCTGACCTTCGCGCAGGCGTTTCGCCTTTCCAATCACCA
GACCGCAAAGGTGAGAATAAAAGCATTGCATACCTTCACCCATATCTTGA
CGCATAACGCTCTTGGACCGAAGCAGCAGCTTCGCCCGGGACTTGCCTTG
GCTCCGCTCCATGACCTCATTGCCTATCATTGTTAAGGGCATCTTGTCCC
CTGAGGATGCCGTCGCGGCTGCAGAAGCAGTCTCACGCTTTTTAAGGGTA
CCCCTCATGCACAAGACGCTTCTTTCCCCGTCTTTTTCTCTCCCGCCGGG
GTCCACTGCCTTATGCACCCGGAAGGAGAAGCTGCTACGGCTCGAGCCGC
CCAAAAGGAAGGCATCATCATGGGGGTCTCGCAGCACGCCACCAAAAGCA
TGGAGGAAATCGCCCTCGCTGCCGCGTCTGCACCTTCCACTTATCCGTCC
TCAAACTCATTCCATTCCGCCTCTTCATCCCTTTTGCCTCCTTCTTCACC
ATTGTGGTACCAGCTGTATATCCTGCACGACCGCTCCTTGACTGCCGCAC
TAGTCCGTCGCGCCCAAGCCGCCGGTTATAGGGCGCTTATTCTCACAGTT
GACTCCCCCGTATTTGGGTTTCGGGAAGCAGACTGGCGCAATGGCTTTGT
GGGCCTGCCAGAGGGGATGGTGCTCGCAAATTACTCTACGAAACGCGGCT
ATGATGATCGGGAGAAGGGAGGCTGGGATCAGAATTCGGAAGACCCATCT
ATGAGTATGTCGCGTCAGGAAGTGAGGACGAGCAGACTCTATGGGAGAAT
CGACAAGGCTTTAAGCGCGTGTTGCTATGCCCAAAGGTGGGGAGAGACGT
GTCGAAGGTTGATATGAGATGGGCGACGTTAAGGAGCAGCAAGCAGCAGC
GCTCGAGGCAGCGACACATCAACCTCTGGCCCGCCTATTGTCGCTCGATG
ACGTCCAAGCAGCAGCCCGTCAAAGGCTACCCAAGCTGCCACGGAATAAT
CGTCAGCAACCATGGTGGGAGACAATTAGACTCCTGCCTTTCCTCTATTG
AAGCTCTTCCGGGCATTGCCGATGCCCTGCGCCAACAAGGGTTCCTAATC
GACTCTGACCTTCGCGCAGGCGTTTCGCCTTTCCAATCACCAGACCGCAA
AGGTGAGAATAAAAGCATTGCATACCTTCACCCATATCTTGACGCATAAC
GCTCTTGGACCGAAGCAGCAGCTTCGCCCGGGACTTGCCTTGGCTCCGCT
CCATGACCTCATTGCCTATCATTGTTAAGGGCATCTTGTCCCCTGAGGAT
GCCGTCGCGGCTGCAGAAGCAGTCTCACGCTTTTTAAGGGTACCCCTCAT
GCACAAGACGCTTCTTTCCCCGTCTTTTTCTCTCCCGCCGGGGTCCACTG
CCTTATGCACCCGGAAGGAGAAGCTGCTACGGCTCGAGCCGCCCAAAAGG
AAGGCATCATCATGGGGGTCTCGCAGCACGCCACCAAAAGCATGGAGGAA
ATCGCCCTCGCTGCCGCGTCTGCACCTTCCACTTATCCGTCCTCAAACTC
ATTCCATTCCGCCTCTTCATCCCTTTTGCCTCCTTCTTCACCATTGTGGT
ACCAGCTGTATATCCTGCACGACCGCTCCTTGACTGCCGCACTAGTCCGT
CGCGCCCAAGCCGCCGGTTATAGGGCGCTTATTCTCACAGTTGACTCCCC
CGTATTTGGGTTTCGGGAAGCAGACTGGCGCAATGGCTTTGTGGGCCTGC
CAGAGGGGATGGTGCTCGCAAATTACTCTACGAAACGCGGCTATGATGAT
CGGGAGAAGGGAGGCTGGGATCAGAATTCGGAAGACCCATCTATGAGTAT
GTCGCGTCAGGAAGTGAGGACGAGCAGACTCTATGGGAGAATCGACAAGG
CTTTAAGCGCGTGTTGCTATGCCCAAAGGTGGGGAGAGACGTGTCGAAGG
TTGATATGAGATGGGCGACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGG
CAGCGACACATCAACCTCTGGCCCGCCTATTGTCGCTCGATGACGTCCAA
GCAGCAGCCCGTCAAAGGCTACCCAAGCTGCCACGGAATAATCGTCAGCA
ACCATGGTGGGAGACAATTAGACTCCTGCCTTTCCTCTATTGAAGCTCTT
CCGGGCATTGCCGATGCCCTGCGCCAACAAGGGTTCCTAATCGACTCTGA
CCTTCGCGCAGGCGTTTCGCCTTTCCAATCACCAGACCGCAAAGGTGAGA
ATAAAAGCATTGCATACCTTCACCCATATCTTGACGCATAACGCTCTTGG
ACCGAAGCAGCAGCTTCGCCCGGGACTTGCCTTGGCTCCGCTCCATGACC
TCATTGCCTATCATTGTTAAGGGCATCTTGTCCCCTGAGGATGCCGTCGC
GGCTGCAGAAGCAGTCTCACGCTTTTTAAGGGTACCCCTCATGCACAAGA
CGCTTCTTTCCCCGTCTTTTTCTCTCCCGCCGGGGTCCACTGCCTTATGC
ACCCGGAAGGAGAAGCTGCTACGGCTCGAGCCGCCCAAAAGGAAGGCATC
ATCATGGGGGTCTCGCAGCACGCCACCAAAAGCATGGAGGAAATCGCCCT
CGCTGCCGCGTCTGCACCTTCCACTTATCCGTCCTCAAACTCATTCCATT
CCGCCTCTTCATCCCTTTTGCCTCCTTCTTCACCATTGTGGTACCAGCTG
TATATCCTGCACGACCGCTCCTTGACTGCCGCACTAGTCCGTCGCGCCCA
AGCCGCCGGTTATAGGGCGCTTATTCTCACAGTTGACTCCCCCGTATTTG
GGTTTCGGGAAGCAGACTGGCGCAATGGCTTTGTGGGCCTGCCAGAGGGG
ATGGTGCTCGCAAATTACTCTACGAAACGCGGCTATGATGATCGGGAGAA
GGGAGGCTGGGATCAGAATTCGGAAGACCCATCTATGAGTATGTCGCGTC
AGGAAGTGAGGACGAGCAGACTCTATGGGAGAATCGACAAGGCTTTAAGC
GCGTGTTGCTATGCCCAAAGGTGGGGAGAGACGTGTCGAAGGTTGATATG
AGATGGGCGACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGGCAGCGACA
CATCAACCTCTGGCCCGCCTATTGTCGCTCGATGACGTCCAAGCAGCAGC
CCGTCAAAGGCTACCCAAGCTGCCACGGAATAATCGTCAGCAACCATGGT
GGGAGACAATTAGACTCCTGCCTTTCCTCTATTGAAGCTCTTCCGGGCAT
TGCCGATGCCCTGCGCCAACAAGGGTTCCTAATCGACTCTGACCTTCGCG
CAGGCGTTTCGCCTTTCCAATCACCAGACCGCAAAGGTGAGAATAAAAGC
ATTGCATACCTTCACCCATATCTTGACGCATAACGCTCTTGGACCGAAGC
AGCAGCTTCGCCCGGGACTTGCCTTGGCTCCGCTCCATGACCTCATTGCC
TATCATTGTTAAGGGCATCTTGTCCCCTGAGGATGCCGTCGCGGCTGCAG
AAGCAGTCTCACGCTTTTTAAGGGTACCCCTCATGCACAAGACGCTTCTT
TCCCCGTCTTTTTCTCTCCCGCCGGGGTCCACTGCCTTATGCACCCGGAA
GGAGAAGCTGCTACGGCTCGAGCCGCCCAAAAGGAAGGCATCATCATGGG
GGTCTCGCAGCACGCCACCAAAAGCATGGAGGAAATCGCCCTCGCTGCCG
CGTCTGCACCTTCCACTTATCCGTCCTCAAACTCATTCCATTCCGCCTCT
TCATCCCTTTTGCCTCCTTCTTCACCATTGTGGTACCAGCTGTATATCCT
GCACGACCGCTCCTTGACTGCCGCACTAGTCCGTCGCGCCCAAGCCGCCG
GTTATAGGGCGCTTATTCTCACAGTTGACTCCCCCGTATTTGGGTTTCGG
GAAGCAGACTGGCGCAATGGCTTTGTGGGCCTGCCAGAGGGGATGGTGCT
CGCAAATTACTCTACGAAACGCGGCTATGATGATCGGGAGAAGGGAGGCT
GGGATCAGAATTCGGAAGACCCATCTATGAGTATGTCGCGTCAGGAAGTG
AGGACGAGCAGACTCTATGGGAGAATCGACAAGGCTTTAAGCGCGTGTTG
CTATGCCCAAAGGTGGGGAGAGACGTGTCGAAGGTTGATATGAGATGGGC
GACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGGCAGCGACACATCAACC
TCTGGCCCGCCTATTGTCGCTCGATGACGTCCAAGCAGCAGCCCGTCAAA
GGCTACCCAA back to top
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