jgi.p|Nanoce1779_2|629836, mRNA_4568 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629836
Unique NamemRNA_4568
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length502
Alignment locationscaffold_9:17600..18524 +

Link to JBrowse

Properties
Property NameValue
TranscriptId629922
TrackFilteredModels2
ProteinId629836
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:17600..18524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629836gene_4568Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629836mRNA_4568-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4568CDS_4568Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4568 ID=mRNA_4568|Name=jgi.p|Nanoce1779_2|629836|organism=Nannochloropsis oceanica|type=mRNA|length=502bp
AGCGCGAAGTGTACGCGCGCGTCTATGTGCAGGCTGCAAGGAGCAAGGGG
GTGTTGTCGAGACCCGCTCGCGTCACACACAAGCGCACTCATCACCCAAC
CCACTCTCATCACTTCCCATTCCCCACGCACGTGCGACCGGGCGCCCCCA
AGCCAGCACAATGTCTGCACTGCCACCATCGTCACGCCCTCCTGGGTTTG
GCGGTCGGGGCAACGGCAAGCTAGAGATCTTCAAATTCTGCCTTTATGTC
TCGATTCCCGTTGTCGCCTCGATCATCTATGGCACGCCCGAGAATATGCA
GAGCATCGTCAATAAGTTTCGTTTTGTGGAGTACCCAGCCGAAGATACTC
GGGGAGGGGATGTGCTGGTTGGTCAGAGCATCAGTCGCGAGGAGAGAGCA
AAGGCCGTAGCGACAGCAGCGGCAGGGAGGGAAGCTGGGAAAGAGGAAGG
GCAGCTACAGGCGGAGAAAAAGGGAGGGTGGGGAGGGCTCTGGCGGAAGT
GA
back to top

protein sequence of jgi.p|Nanoce1779_2|629836

>mRNA_4568-protein ID=mRNA_4568-protein|Name=jgi.p|Nanoce1779_2|629836|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MSALPPSSRPPGFGGRGNGKLEIFKFCLYVSIPVVASIIYGTPENMQSIV
NKFRFVEYPAEDTRGGDVLVGQSISREERAKAVATAAAGREAGKEEGQLQ
AEKKGGWGGLWRK*
back to top

mRNA from alignment at scaffold_9:17600..18524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4568 ID=mRNA_4568|Name=jgi.p|Nanoce1779_2|629836|organism=Nannochloropsis oceanica|type=mRNA|length=925bp|location=Sequence derived from alignment at scaffold_9:17600..18524+ (Nannochloropsis oceanica)
AGCGCGAAGTGTACGCGCGCGTCTATGTGCAGGCTGCAAGGAGCAAGGGG
GTGTTGTCGAGACCCGCTCGCGTCACACACAAGCGCACTCATCACCCAAC
CCACTCTCATCACTTCCCATTCCCCACGCACGTGCGACCGGGCGCCCCCA
AGCCAGCACAATGTCTGCACTGCCACCATCGTCACGCCCTCCTGGGTTTG
GCGGTCGGGGCAACGGCAAGCTAGAGATCTTCAAATTCTGCCTTTATGTC
TCGAGTACGTACGGGAGGGAGGGGACGAAAGGGAACAGGGAAGGGAGGGA
GTAAAAGGGAAGAAAGAGAAGGGGAGGGAAACTCCTGCGTTCCTTGCGAT
CAGGTGGGCGCTCCACCGGTTGCTGCATCATGCCTTCATGTGTTTGCTAT
TCTGGCGCTTGAGTGCGGTAGCTTACCGTCACAATGGCCTTTAGCCCTCT
CCTCTTGCCTCAGATGAGGGTAAGACTGGGTATCTCATGCTGATACACAC
GCTGCACTGCTTCTCCTTATGTCCCGACCGATTTTGATGGGATGGCCTCA
CATGCATCCACATATCATCTTGCACACCAGCATTCTTACTCTTGGTCCTC
CTTTGTCCTTCTTCGCTCACGCTCCCATGCCTTCCCGCTCCTGCTCTCCC
TCCCTCCCAACCGGTTTCCTTTCACAGTTCCCGTTGTCGCCTCGATCATC
TATGGCACGCCCGAGAATATGCAGAGCATCGTCAATAAGTTTCGTTTTGT
GGAGTACCCAGCCGAAGATACTCGGGGAGGGGATGTGCTGGTTGGTCAGA
GCATCAGTCGCGAGGAGAGAGCAAAGGCCGTAGCGACAGCAGCGGCAGGG
AGGGAAGCTGGGAAAGAGGAAGGGCAGCTACAGGCGGAGAAAAAGGGAGG
GTGGGGAGGGCTCTGGCGGAAGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_9:17600..18524+

>mRNA_4568 ID=mRNA_4568|Name=jgi.p|Nanoce1779_2|629836|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_9:17600..18524+ (Nannochloropsis oceanica)
ATGTCTGCACTGCCACCATCGTCACGCCCTCCTGGGTTTGGCGGTCGGGG
CAACGGCAAGCTAGAGATCTTCAAATTCTGCCTTTATGTCTCGATTCCCG
TTGTCGCCTCGATCATCTATGGCACGCCCGAGAATATGCAGAGCATCGTC
AATAAGTTTCGTTTTGTGGAGTACCCAGCCGAAGATACTCGGGGAGGGGA
TGTGCTGGTTGGTCAGAGCATCAGTCGCGAGGAGAGAGCAAAGGCCGTAG
CGACAGCAGCGGCAGGGAGGGAAGCTGGGAAAGAGGAAGGGCAGCTACAG
GCGGAGAAAAAGGGAGGGTGGGGAGGGCTCTGGCGGAAGTGAATGTCTGC
ACTGCCACCATCGTCACGCCCTCCTGGGTTTGGCGGTCGGGGCAACGGCA
AGCTAGAGATCTTCAAATTCTGCCTTTATGTCTCGATTCCCGTTGTCGCC
TCGATCATCTATGGCACGCCCGAGAATATGCAGAGCATCGTCAATAAGTT
TCGTTTTGTGGAGTACCCAGCCGAAGATACTCGGGGAGGGGATGTGCTGG
TTGGTCAGAGCATCAGTCGCGAGGAGAGAGCAAAGGCCGTAGCGACAGCA
GCGGCAGGGAGGGAAGCTGGGAAAGAGGAAGGGCAGCTACAGGCGGAGAA
AAAGGGAGGGTGGGGAGGGCTCTGGCGGAAGTGA
back to top
Synonyms
Publications