jgi.p|Nanoce1779_2|586967, mRNA_4567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586967
Unique NamemRNA_4567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length509
Alignment locationscaffold_9:15958..16466 -

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Properties
Property NameValue
TranscriptId587053
TrackFilteredModels2
ProteinId586967
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:15958..16466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586967gene_4567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586967mRNA_4567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4567CDS_4567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4567 ID=mRNA_4567|Name=jgi.p|Nanoce1779_2|586967|organism=Nannochloropsis oceanica|type=mRNA|length=509bp
TGCCTCCCTCCGACCACCACGAGGAATGCAAGCCCCTCTATCCGGCCCTC
CTTCCCGCCCTCCCCCCCGCCCTCCCTCCCACGTTGTCCCCTCCTCATTT
CACCACTGGTCGTTTTCCTGGTGGATCTGCCCACACTACTTCTTCGAGTC
CCTCATCTACCTCTCGCTTCTCCTCCTGTGCAGCAGCAGCAGCACCACCG
CAACCACCAGGAAGCTGGATGGGAGGGAGGGTGGGATGAATACCAGTGTG
TTGTGGATGTGGGTGTGGGTGACGGCGAATCTGACCGTATCGGCGGCCAA
GAGCCAAAGGTGGTACTTCCAAAACTTTCCAAAGGCGGCTAGAAAGATGA
GGAGGAGGGCGTTGCTGCTGCCTGGGATGTTGTGAAGGGGGATGGGAGAG
GGAGAGAGATAGGGAAGGAAGTAAGGAAGGAGGACTGTGAATAAATAGGT
TTGTAGATACAAAGAAACAATCCGGGCAGTGTAAGAAGAAAATAAGTGGA
TCAAGTACA
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protein sequence of jgi.p|Nanoce1779_2|586967

>mRNA_4567-protein ID=mRNA_4567-protein|Name=jgi.p|Nanoce1779_2|586967|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MQAPLSGPPSRPPPRPPSHVVPSSFHHWSFSWWICPHYFFESLIYLSLLL
LCSSSSTTATTRKLDGREGGMNTSVLWMWVWVTANLTVSAAKSQRWYFQN
FPKAARKMRRRALLLPGML*
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mRNA from alignment at scaffold_9:15958..16466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4567 ID=mRNA_4567|Name=jgi.p|Nanoce1779_2|586967|organism=Nannochloropsis oceanica|type=mRNA|length=509bp|location=Sequence derived from alignment at scaffold_9:15958..16466- (Nannochloropsis oceanica)
TGCCTCCCTCCGACCACCACGAGGAATGCAAGCCCCTCTATCCGGCCCTC
CTTCCCGCCCTCCCCCCCGCCCTCCCTCCCACGTTGTCCCCTCCTCATTT
CACCACTGGTCGTTTTCCTGGTGGATCTGCCCACACTACTTCTTCGAGTC
CCTCATCTACCTCTCGCTTCTCCTCCTGTGCAGCAGCAGCAGCACCACCG
CAACCACCAGGAAGCTGGATGGGAGGGAGGGTGGGATGAATACCAGTGTG
TTGTGGATGTGGGTGTGGGTGACGGCGAATCTGACCGTATCGGCGGCCAA
GAGCCAAAGGTGGTACTTCCAAAACTTTCCAAAGGCGGCTAGAAAGATGA
GGAGGAGGGCGTTGCTGCTGCCTGGGATGTTGTGAAGGGGGATGGGAGAG
GGAGAGAGATAGGGAAGGAAGTAAGGAAGGAGGACTGTGAATAAATAGGT
TTGTAGATACAAAGAAACAATCCGGGCAGTGTAAGAAGAAAATAAGTGGA
TCAAGTACA
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Coding sequence (CDS) from alignment at scaffold_9:15958..16466-

>mRNA_4567 ID=mRNA_4567|Name=jgi.p|Nanoce1779_2|586967|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_9:15958..16466- (Nannochloropsis oceanica)
ATGCAAGCCCCTCTATCCGGCCCTCCTTCCCGCCCTCCCCCCCGCCCTCC
CTCCCACGTTGTCCCCTCCTCATTTCACCACTGGTCGTTTTCCTGGTGGA
TCTGCCCACACTACTTCTTCGAGTCCCTCATCTACCTCTCGCTTCTCCTC
CTGTGCAGCAGCAGCAGCACCACCGCAACCACCAGGAAGCTGGATGGGAG
GGAGGGTGGGATGAATACCAGTGTGTTGTGGATGTGGGTGTGGGTGACGG
CGAATCTGACCGTATCGGCGGCCAAGAGCCAAAGGTGGTACTTCCAAAAC
TTTCCAAAGGCGGCTAGAAAGATGAGGAGGAGGGCGTTGCTGCTGCCTGG
GATGTTGTGA
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Synonyms
Publications