jgi.p|Nanoce1779_2|435414, mRNA_4566 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|435414
Unique NamemRNA_4566
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length566
Alignment locationscaffold_9:12927..14981 +

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Properties
Property NameValue
TranscriptId435500
TrackFilteredModels2
ProteinId435414
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:12927..14981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|435414gene_4566Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|435414mRNA_4566-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4566CDS_4566Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4566 ID=mRNA_4566|Name=jgi.p|Nanoce1779_2|435414|organism=Nannochloropsis oceanica|type=mRNA|length=566bp
GGTAGACTTGCCAACTGGAATAAAAACGATATGTATAGCCTACCTTCTAA
ACCTTCTACTCAAAGCAACATGACCCACACGCCCACCGCTATCGCCACCC
ACATCGAGGAGAGCCATGTTATCCCCGCACCCATCACGGACGTGTGGTCG
GTCATTAAGAGCATGAAGATGGAGACGTGGTGGAGCTTGCTCGACAAGGT
CACATCCGACTCTTCTGCGCCCGGTCTGTCCATCGGGAGCACCTACACGC
TGCACTTTAAGGACGGTACGGCATGGGGCATTGTGATCATGGAGGCCAGC
GAGCTGCATAAGTCTGTGTCCTTCGAGCTGGTGAGCAGCAATCCCAGCAT
TTCTGTATCCTCGGCCCTCCACAAGCTTAGCTGCAAGCCCGTCACTGCCA
CGAACCAGAGCTTCATCTCCTGGTCCACAGATTTCAGCAACGACGCCTCC
GCCGACACCGTCCTTGACTCTCGCTTCAAGAAGCGCGAAGGACTCCAAGG
ACTGCATGACCACTTCGCTACCAATAAGTAGAGGGAGGGAGGAAGAGAGA
GCCAAGAACTTTAGGG
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protein sequence of jgi.p|Nanoce1779_2|435414

>mRNA_4566-protein ID=mRNA_4566-protein|Name=jgi.p|Nanoce1779_2|435414|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MYSLPSKPSTQSNMTHTPTAIATHIEESHVIPAPITDVWSVIKSMKMETW
WSLLDKVTSDSSAPGLSIGSTYTLHFKDGTAWGIVIMEASELHKSVSFEL
VSSNPSISVSSALHKLSCKPVTATNQSFISWSTDFSNDASADTVLDSRFK
KREGLQGLHDHFATNK*
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mRNA from alignment at scaffold_9:12927..14981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4566 ID=mRNA_4566|Name=jgi.p|Nanoce1779_2|435414|organism=Nannochloropsis oceanica|type=mRNA|length=2055bp|location=Sequence derived from alignment at scaffold_9:12927..14981+ (Nannochloropsis oceanica)
GGTAGACTTGCCAACTGGAATAAAAACGATATGTATAGGTGCGTGTGTAC GATGCGGCATGATTTGGCAATAGCGCAGCAGGGACATACGCCCTAAACCC AGACCGCAGCAGGAAAGCACGTCACTCAGTCTCCCTCCTCCCTTGTCTCC GCCTCGTACTACTGCTGCTGCGCTGGCCGGTTTCCCATGCCATCTGGGCG GCGGCACTGCTTTTCTCACGGTTGCGGGAGTGCTTTTCTCACACCACTCG CTCCTCCCGCTACACGTTACAGCCTACCTTCTAAACCTTCTACTCAAAGC AACATGACCCACACGCCCACCGCTATCGCCACCCACATCGAGGAGAGCCA TGTTATCCCCGCACCCATCACGGACGGTAAGTGAGGCCAGGAGGGAGGGA GGGAGGGAGGGAAGGAGGGAGGGAGAGAGGGAGGGAGGTAATTGGGGTCT TTCACTTCTGCCTCGCCTTACATCGATCTCCCAAGAGAATCAGTTCAACA ACCAACCAGCGCTACCTAACCTCCGTACTCTCTTCCTTCCTATGTCCTAA TTAAAGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGACGTGGTGGAGC TTGCTCGACAAGGTGGGGGAGGGAGGGGGGGGAGGGAGGGAGACAGGGAG GCAGCATGCTTTCATTCATTTGTTCAACCGACATTATACACCATTCCCCT CCGTCCTTTCTTTCCTCTTTCCCTCCCTCCCGCCCTCCCTTCCTCCCCAA GGTCACATCCGACTCTTCTGCGCCCGGTCTGTCCATCGGGAGCACCTACA CGCTGCACTTTAAGGACGGTACGGCATGGGGCATTGTGATCATGGAGGCC AGCGAGCTGCATAAGTGAGTACGAGAGGGAGGGAGGGAAGGCGACAATGG ATTGTCAGGAGCCTCATGCCTATTGTCTAATCGACAGTCACTCGACCACC TGCCCACGTACGCTTCCCTCACTCCCTCCCTCCCTCCCTCTCTCCCTCTC CAGGTCTGTGTCCTTCGAGCTGGTGAGCAGCAATCCCAGCATTTCTGTAT CCTCGGCCCTCCACAAGCTTAGCTGCAAGGTAGGGACGAGGAAAGGAGGG ACAAAAGGAAGAGAAGGGGGCAGGGAGGCAGGGAGGGAGGGAGGGAGGAA CAGAAGGTGGGAGAAGCTTTGTCAGAGAGAGTAACCACCCCTGCGTCTCT ATGGTAGTGACCCTGCGCAAGTGTCACCCATCGCCCCCATCCACCTTGCC ATGATGAGAAGGAGAGCGGGGGAGGGGGAGGAGGGGGAGGAGAAAGAGCG AAAGGGGGTCGGGGAGGATGAGCTGGGGCAATGACAGTCGTAGGCGCCAT AATTTTCTCTCCTCGACTCAACAAAGAAATTTTAACCACTCCCCTCCCTC CCTCCCTCCCTTCCTCCCTCCTCCCTCAGCCCGTCACTGCCACGAACCAG AGCTTCATCTCCTGGTCCACAGATTTCAGCAACGACGCCTCCGCCGACAC CGTCCTTGACTCTCGCTTCAAGAAGCGTGAGTCTGTTCACACCTTCCCCC CCTCCCTCCCTCCCCTGTTCCTTCCCTCCTTCCTTCCCTCCTTTCTTTCT TCCATCCCTTCCTCCCTCTTCTTCACGGATGATGATGCTCCCATTTCGTT TGAGAGAAAGGTACCACGACGCGAAGCACTCATCCCTCCCTCCCTCCCTC CCTCAGGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAATAAG TAGAGGGAGGGAGGAAGAGAGAGCGGGAGGGACAGAGGGAGGGATAGAGG GAGGGAGGGAGAGAGGGAGGAATAGAGGCCAAGAACTTTAGGGAGAGAGG GAGGGAGGGAGGGATAGAAAGAGGGATAGAGGGAGGGACAGAGGGAGGGA TAGAGGGAGGGAGGGAGGGATGGAGGAATAGAGGCCAAGAACTTTAGGGA GAGAGGGAGGGAGGGAGGGATGGAAGGAGGGATAGAGGGAGGGACAGAGG GAGGGATAGAGGGAGGGAGGGAGGGATGGAGGAATAGAGGCCAAGAACTT TAGGG
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Coding sequence (CDS) from alignment at scaffold_9:12927..14981+

>mRNA_4566 ID=mRNA_4566|Name=jgi.p|Nanoce1779_2|435414|organism=Nannochloropsis oceanica|type=CDS|length=3507bp|location=Sequence derived from alignment at scaffold_9:12927..14981+ (Nannochloropsis oceanica)
ATGTATAGCCTACCTTCTAAACCTTCTACTCAAAGCAACATGACCCACAC
GCCCACCGCTATCGCCACCCACATCGAGGAGAGCCATGTTATCCCCGCAC
CCATCACGGACGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGACGTGG
TGGAGCTTGCTCGACAAGGTCACATCCGACTCTTCTGCGCCCGGTCTGTC
CATCGGGAGCACCTACACGCTGCACTTTAAGGACGGTACGGCATGGGGCA
TTGTGATCATGGAGGCCAGCGAGCTGCATAAGTCTGTGTCCTTCGAGCTG
GTGAGCAGCAATCCCAGCATTTCTGTATCCTCGGCCCTCCACAAGCTTAG
CTGCAAGCCCGTCACTGCCACGAACCAGAGCTTCATCTCCTGGTCCACAG
ATTTCAGCAACGACGCCTCCGCCGACACCGTCCTTGACTCTCGCTTCAAG
AAGCGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAATAAGTA
GATGTATAGCCTACCTTCTAAACCTTCTACTCAAAGCAACATGACCCACA
CGCCCACCGCTATCGCCACCCACATCGAGGAGAGCCATGTTATCCCCGCA
CCCATCACGGACGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGACGTG
GTGGAGCTTGCTCGACAAGGTCACATCCGACTCTTCTGCGCCCGGTCTGT
CCATCGGGAGCACCTACACGCTGCACTTTAAGGACGGTACGGCATGGGGC
ATTGTGATCATGGAGGCCAGCGAGCTGCATAAGTCTGTGTCCTTCGAGCT
GGTGAGCAGCAATCCCAGCATTTCTGTATCCTCGGCCCTCCACAAGCTTA
GCTGCAAGCCCGTCACTGCCACGAACCAGAGCTTCATCTCCTGGTCCACA
GATTTCAGCAACGACGCCTCCGCCGACACCGTCCTTGACTCTCGCTTCAA
GAAGCGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAATAAGT
AGATGTATAGCCTACCTTCTAAACCTTCTACTCAAAGCAACATGACCCAC
ACGCCCACCGCTATCGCCACCCACATCGAGGAGAGCCATGTTATCCCCGC
ACCCATCACGGACGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGACGT
GGTGGAGCTTGCTCGACAAGGTCACATCCGACTCTTCTGCGCCCGGTCTG
TCCATCGGGAGCACCTACACGCTGCACTTTAAGGACGGTACGGCATGGGG
CATTGTGATCATGGAGGCCAGCGAGCTGCATAAGTCTGTGTCCTTCGAGC
TGGTGAGCAGCAATCCCAGCATTTCTGTATCCTCGGCCCTCCACAAGCTT
AGCTGCAAGCCCGTCACTGCCACGAACCAGAGCTTCATCTCCTGGTCCAC
AGATTTCAGCAACGACGCCTCCGCCGACACCGTCCTTGACTCTCGCTTCA
AGAAGCGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAATAAG
TAGATGTATAGCCTACCTTCTAAACCTTCTACTCAAAGCAACATGACCCA
CACGCCCACCGCTATCGCCACCCACATCGAGGAGAGCCATGTTATCCCCG
CACCCATCACGGACGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGACG
TGGTGGAGCTTGCTCGACAAGGTCACATCCGACTCTTCTGCGCCCGGTCT
GTCCATCGGGAGCACCTACACGCTGCACTTTAAGGACGGTACGGCATGGG
GCATTGTGATCATGGAGGCCAGCGAGCTGCATAAGTCTGTGTCCTTCGAG
CTGGTGAGCAGCAATCCCAGCATTTCTGTATCCTCGGCCCTCCACAAGCT
TAGCTGCAAGCCCGTCACTGCCACGAACCAGAGCTTCATCTCCTGGTCCA
CAGATTTCAGCAACGACGCCTCCGCCGACACCGTCCTTGACTCTCGCTTC
AAGAAGCGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAATAA
GTAGATGTATAGCCTACCTTCTAAACCTTCTACTCAAAGCAACATGACCC
ACACGCCCACCGCTATCGCCACCCACATCGAGGAGAGCCATGTTATCCCC
GCACCCATCACGGACGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGAC
GTGGTGGAGCTTGCTCGACAAGGTCACATCCGACTCTTCTGCGCCCGGTC
TGTCCATCGGGAGCACCTACACGCTGCACTTTAAGGACGGTACGGCATGG
GGCATTGTGATCATGGAGGCCAGCGAGCTGCATAAGTCTGTGTCCTTCGA
GCTGGTGAGCAGCAATCCCAGCATTTCTGTATCCTCGGCCCTCCACAAGC
TTAGCTGCAAGCCCGTCACTGCCACGAACCAGAGCTTCATCTCCTGGTCC
ACAGATTTCAGCAACGACGCCTCCGCCGACACCGTCCTTGACTCTCGCTT
CAAGAAGCGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAATA
AGTAGATGTATAGCCTACCTTCTAAACCTTCTACTCAAAGCAACATGACC
CACACGCCCACCGCTATCGCCACCCACATCGAGGAGAGCCATGTTATCCC
CGCACCCATCACGGACGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGA
CGTGGTGGAGCTTGCTCGACAAGGTCACATCCGACTCTTCTGCGCCCGGT
CTGTCCATCGGGAGCACCTACACGCTGCACTTTAAGGACGGTACGGCATG
GGGCATTGTGATCATGGAGGCCAGCGAGCTGCATAAGTCTGTGTCCTTCG
AGCTGGTGAGCAGCAATCCCAGCATTTCTGTATCCTCGGCCCTCCACAAG
CTTAGCTGCAAGCCCGTCACTGCCACGAACCAGAGCTTCATCTCCTGGTC
CACAGATTTCAGCAACGACGCCTCCGCCGACACCGTCCTTGACTCTCGCT
TCAAGAAGCGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAAT
AAGTAGATGTATAGCCTACCTTCTAAACCTTCTACTCAAAGCAACATGAC
CCACACGCCCACCGCTATCGCCACCCACATCGAGGAGAGCCATGTTATCC
CCGCACCCATCACGGACGTGTGGTCGGTCATTAAGAGCATGAAGATGGAG
ACGTGGTGGAGCTTGCTCGACAAGGTCACATCCGACTCTTCTGCGCCCGG
TCTGTCCATCGGGAGCACCTACACGCTGCACTTTAAGGACGGTACGGCAT
GGGGCATTGTGATCATGGAGGCCAGCGAGCTGCATAAGTCTGTGTCCTTC
GAGCTGGTGAGCAGCAATCCCAGCATTTCTGTATCCTCGGCCCTCCACAA
GCTTAGCTGCAAGCCCGTCACTGCCACGAACCAGAGCTTCATCTCCTGGT
CCACAGATTTCAGCAACGACGCCTCCGCCGACACCGTCCTTGACTCTCGC
TTCAAGAAGCGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTACCAA
TAAGTAG
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Synonyms
Publications