jgi.p|Nanoce1779_2|586955, mRNA_4563 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586955
Unique NamemRNA_4563
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length678
Alignment locationscaffold_9:6412..7537 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587041
TrackFilteredModels2
ProteinId586955
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:6412..7537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586955gene_4563Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586955mRNA_4563-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4563CDS_4563Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4563 ID=mRNA_4563|Name=jgi.p|Nanoce1779_2|586955|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
CTTACAGCGACCCTACCCTCCATCCCTTCCCTCCTTCCCTTCCTCCCTCC
CTCCCTCCCTCGAATCAGGCTGGCACCCTTTCGGGGAACCCCCTGGCCAT
GACGGCCGGAATTAAGACTTTGGAGATTTTGAAGCGCCCGGGCTCGTACG
AGAAGCTCGACAAGCTCACCGCCCGCCTCATTGATGGTATCCTGAAGGAG
GGCGCGGCGGCGGGCCACGCGGTGTGCGGTGGGCACATCAGTGGCATGTT
CGGCTTCTTCTTCACCGAGGGCCCCGTCCGATGCTTCAGTGACGCCGCCA
AGAGCGACACGGCCAAGTTCGCTAAGTGGCATCGCGGCATGCTCGAGCGC
GGCGTCTACCTGGCCCCCTCGCAGTATGAAGCAGGCTTCATGTCCCTAGC
TCACACGGAGGCCGACATCGATGCCACCATCGCAGCGGCCAGGGAGGTGT
TCAAGACGCTTTAAATGAAGAGAGAGAAGGCAAAGAGTTATTGTAGGGCA
AGGAAAAGAGGAAAAGCAGGGCAGTTTTGAGAGTAAGGAAATGTTTATCT
TCTTCTGGTGGTGCGAGAGGGGGGGGGAGGGAGTGCATAAGGGAGGGAAG
AAAGGATCACTATACTACAATGGCGTAAAACCGCACGCGCATACCAAAGA
AAAGAAAGAAAGGAATGGAAGAAAGTTA
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protein sequence of jgi.p|Nanoce1779_2|586955

>mRNA_4563-protein ID=mRNA_4563-protein|Name=jgi.p|Nanoce1779_2|586955|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MTAGIKTLEILKRPGSYEKLDKLTARLIDGILKEGAAAGHAVCGGHISGM
FGFFFTEGPVRCFSDAAKSDTAKFAKWHRGMLERGVYLAPSQYEAGFMSL
AHTEADIDATIAAAREVFKTL*
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mRNA from alignment at scaffold_9:6412..7537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4563 ID=mRNA_4563|Name=jgi.p|Nanoce1779_2|586955|organism=Nannochloropsis oceanica|type=mRNA|length=1126bp|location=Sequence derived from alignment at scaffold_9:6412..7537+ (Nannochloropsis oceanica)
CTTACAGCGACCCTACCCTCCATCCCTTCCCTCCTTCCCTTCCTCCCTCC
CTCCCTCCCTCGAATCAGGCTGGCACCCTTTCGGGGAACCCCCTGGCCAT
GACGGCCGGAATTAAGACTTTGGAGATTTTGAAGCGCCCGGGCTCGTACG
AGAAGCTCGACAAGCTCACCGCCCGCCTCATTGATGGGTAGGTAGGGAGG
GAAGAAAGAAGGGAGGGAGGGAAGAAAGAAGGGAAGGAGGGGAGAAGAAA
GGGAAAGAGAGCAACTCTACCACATTTGAATTTGACAATCACCTCTTTTC
GGCTTTCCCGCCATTTGGGCCGTGAAAAGGTGTAAATGTAGAAAGACTCA
CATTGATCTGCTTTTCCCGCCCTCCTTCCCTCCCTCCCTCCCAGTATCCT
GAAGGAGGGCGCGGCGGCGGGCCACGCGGTGTGCGGTGGGCACATCAGTG
GCATGTTCGGCTTCTTCTTCACCGAGGGCCCCGTCCGATGCTTCAGTGAC
GCCGCCAAGAGCGACACGGTGCGTCCTCTTGCCATCCACCTCCCCCCTCG
GGCTCTCTGCTTCTTAGTACTACTCTCTTACAGCCTCGCTTTCCCTGTCT
TGAGGAAAGCGAGAGAGGGCGAGTCGGGATGATTTCTAATGCCAGTTTTC
CTTCATCCCGTTAGGTGGAGCGTGTGTACTGATTTCTCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCTTCTTCC
CTCCCTTAGGCCAAGTTCGCTAAGTGGCATCGCGGCATGCTCGAGCGCGG
CGTCTACCTGGCCCCCTCGCAGTATGAAGCAGGCTTCATGTCCCTAGCTC
ACACGGAGGCCGACATCGATGCCACCATCGCAGCGGCCAGGGAGGTGTTC
AAGACGCTTTAAATGAAGAGAGAGAAGGCAAAGAGTTATTGTAGGGCAAG
GAAAAGAGGAAAAGCAGGGCAGTTTTGAGAGTAAGGAAATGTTTATCTTC
TTCTGGTGGTGCGAGAGGGGGGGGGAGGGAGTGCATAAGGGAGGGAAGAA
AGGATCACTATACTACAATGGCGTAAAACCGCACGCGCATACCAAAGAAA
AGAAAGAAAGGAATGGAAGAAAGTTA
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Coding sequence (CDS) from alignment at scaffold_9:6412..7537+

>mRNA_4563 ID=mRNA_4563|Name=jgi.p|Nanoce1779_2|586955|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_9:6412..7537+ (Nannochloropsis oceanica)
ATGACGGCCGGAATTAAGACTTTGGAGATTTTGAAGCGCCCGGGCTCGTA
CGAGAAGCTCGACAAGCTCACCGCCCGCCTCATTGATGGTATCCTGAAGG
AGGGCGCGGCGGCGGGCCACGCGGTGTGCGGTGGGCACATCAGTGGCATG
TTCGGCTTCTTCTTCACCGAGGGCCCCGTCCGATGCTTCAGTGACGCCGC
CAAGAGCGACACGGCCAAGTTCGCTAAGTGGCATCGCGGCATGCTCGAGC
GCGGCGTCTACCTGGCCCCCTCGCAGTATGAAGCAGGCTTCATGTCCCTA
GCTCACACGGAGGCCGACATCGATGCCACCATCGCAGCGGCCAGGGAGGT
GTTCAAGACGCTTTAAATGACGGCCGGAATTAAGACTTTGGAGATTTTGA
AGCGCCCGGGCTCGTACGAGAAGCTCGACAAGCTCACCGCCCGCCTCATT
GATGGTATCCTGAAGGAGGGCGCGGCGGCGGGCCACGCGGTGTGCGGTGG
GCACATCAGTGGCATGTTCGGCTTCTTCTTCACCGAGGGCCCCGTCCGAT
GCTTCAGTGACGCCGCCAAGAGCGACACGGCCAAGTTCGCTAAGTGGCAT
CGCGGCATGCTCGAGCGCGGCGTCTACCTGGCCCCCTCGCAGTATGAAGC
AGGCTTCATGTCCCTAGCTCACACGGAGGCCGACATCGATGCCACCATCG
CAGCGGCCAGGGAGGTGTTCAAGACGCTTTAAATGACGGCCGGAATTAAG
ACTTTGGAGATTTTGAAGCGCCCGGGCTCGTACGAGAAGCTCGACAAGCT
CACCGCCCGCCTCATTGATGGTATCCTGAAGGAGGGCGCGGCGGCGGGCC
ACGCGGTGTGCGGTGGGCACATCAGTGGCATGTTCGGCTTCTTCTTCACC
GAGGGCCCCGTCCGATGCTTCAGTGACGCCGCCAAGAGCGACACGGCCAA
GTTCGCTAAGTGGCATCGCGGCATGCTCGAGCGCGGCGTCTACCTGGCCC
CCTCGCAGTATGAAGCAGGCTTCATGTCCCTAGCTCACACGGAGGCCGAC
ATCGATGCCACCATCGCAGCGGCCAGGGAGGTGTTCAAGACGCTTTAA
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Synonyms
Publications