|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 587029 |
| Track | FilteredModels2 |
| ProteinId | 586943 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:1..2725 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4561 ID=mRNA_4561|Name=jgi.p|Nanoce1779_2|586943|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp
ACAGTACTTCAGGTGGCAAGAGCGCGACGACGAGGAGGGGAGGCTGCATT
ATCAGAGACCCACAGAGATGGCAGAGGAAGCCAAAACGGTGGGCATGGAC
GAGGACCGGCCAGCGCCTGGAGGAGGGGCAGCAGAAAGCGGTGGAGGGCC
AACCAGTGGCACTGGCACGGCGCCTGCGGGGGGTGCAGCCCCCCGCTTCG
AGATCAAGAAATGGAACGCGGTGACGATGTGGTCGTGGGACATATGCGCG
GACACGTGCGCCATCTGTCGGAATAACCTCAACGAGCCTTCCATCGAGTA
CCAGGCCAACCCCTCCCCCAACAACGAGAACGGCCTCTCCATCGCCTTCG
GCTGCTGCTCCCACGTGTTCCACCTCGACTGCATTCAGCGCTGGCTCAAG
GCTCGGTCCGTCTGCCCCCTGTGTAACAAGGAGTGGGAATTCAGTAAGAT
CGAGCGCATCCCCGGCTACAACGCCCTGGGCATTTAAGCAATTTGCTCAG
TGGGCTTGCTTTCTTCTCTTCCCTCCCTCTCTCCTTTGGGGACTGGGTGG
GGGAGGGTGTGATGAGCAGGAGGAAGAGGGAGAGATGTAGGAGATAGTGG
ACATGTTCATAGTGAAAGAAAAAGAAGATGGAAAAGGAGAAGAAAAAGTA
AAAGAATAAGAACAAGGCGAACGTGGGAAGGAGGGTGGGCAAGCGAGGCA
ATATTATTAAGACGACAAAAAGGAAAATAAAGAGAAAAGGAAGATTACTC
ACGTATGAGCACGGCGATGGTGTTGCTTTGCGCATGGCCGCATCATACTG
CGCCTTGGCGGTGTCAAAAGGTGGGTAGAAAAGGGAAAGGCGGCTTTCCT
GACCTAGCAACTTGAACGTGTTCGTCGGTCCGCTTGGAGGAAAATGGGCC
GTTGTGAGCACCAGGCACGTCTTTTGGAGTGGGAGAGGGTGTCTTGCACT
CCTCTTGAGCATATTGGGACTCTCCCTGCGGGATTCAGCATGGACATTTT
GAAATTTCATGCGCTCGAGCTTATGTTTGGTGTTGTTGTCGGGCGTTCCC
CTTCTCCACTCTCTCTCTGTCTTGCTCCTCCGGGGGGAGTCCTCCCCAAT
AATTGCACCACATGGGACGTGGACGAGTAACCCTACTCCGCCATATTTAT
CATTTACATCGTCCCTCGTCTTTACTGATACAGCAGCCACATCCCTCACT
CTTTCACCAACAAATCACACAGGCCGTCGCCGCAAACAAAGAGAGGCAGC
AAAGGGGAAATCAACCATGTGCTACGAAGTGACCTGTCGAGGATGCGGGA
ACGCCACCTTCGGCGGATGCGGGCGTCACGTCGCCGCGGTACGTCTAAGA
GGGCAACTTTTTCAGGAGATAAATCTGAATATTTTATAGGGAAGGTCGCT
TTGCACTTCTTCTGTCTTCGCTTGCCGTGCTGGACTAATGTGCACGCTGC
GAGCAATGGGGTCACATTGCTTCGTGTATACATGTACCATCGTCTAACGC
ACCCAAACATGCATATACAGGTGAAGGCCGAGGTGGCCCAGGCTGGGCGA
CAGTGGTGTACTTGTGATGCAGAGAAACCCACGACAAAACCTTCCATGC back to topprotein sequence of jgi.p|Nanoce1779_2|586943 >mRNA_4561-protein ID=mRNA_4561-protein|Name=jgi.p|Nanoce1779_2|586943|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MAEEAKTVGMDEDRPAPGGGAAESGGGPTSGTGTAPAGGAAPRFEIKKWN
AVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHV
FHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI* back to topmRNA from alignment at scaffold_9:1..2725- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4561 ID=mRNA_4561|Name=jgi.p|Nanoce1779_2|586943|organism=Nannochloropsis oceanica|type=mRNA|length=2725bp|location=Sequence derived from alignment at scaffold_9:1..2725- (Nannochloropsis oceanica)
ACAGTACTTCAGGTGGCAAGAGCGCGACGACGAGGAGGGGAGGCTGCATT
ATCAGAGACCCACAGAGATGGCAGAGGAAGCCAAAACGGTGGGCATGGAC
GAGGACCGGCCAGCGCCTGGAGGTAGGGGGGTGGAGAGGGTTGAGAGAGG
GCGCACTGGTAGAAAGGACAGAGCTGCCCTGCGGGAGAAGGGTATGTTGA
GTGCGTGTGTGTTTGTTTGTTTGTGTGTGTATGTGTATGTGTGGGACCTC
CTTGCCAGACGTGGGCACATGCTATAACATTGCTTGCCTGTCTTGTGACT
GCACTGCAATTGTTTTGTCCTTCTGGCCCTCTCCCTTTCCTCTCTCCCTT
TCCTTACTACCCACGTTCCAACGGTGGTACAGCAGCACACCACTGCCTCT
TCCTACTTTATCGCCCCCCCTCCCTTTACCACCCGTCTCTGTCTCAATCC
CCTCCACTGCTTCCTTTCCTGGGCGTCTGCTTGCTCTTGCATTCATCAGC
ATTTGCCTCCATCCACCTGCACGTAACACCCTCCTGAAAGCCTCCGTCCC
TTCCATCCCTCCCGCTCCCTCAATCTCTCATCCCCTCTGCTCACACTTCC
AACCCCACTCCTCAGGAGGGGCAGCAGAAAGCGGTGGAGGGCCAACCAGT
GGCACTGGCACGGCGCCTGCGGGGGGTGCAGGTGAGGAGGGGAGGGAGGA
AGGGAGGGATTAGAAGGAGGGGAAGTCGGGAAGAAGGAGGATGAGAAGGA
AGGCACCTTGACTAGTGGTGCTCTCGGCGAGCCATTTTTGTACACAGTCT
GTCTATCTATCTGCTTATCCATCCAGCTGTTTGGAGAGGAGAGCAGCGGA
TACCGTATCATTCTGACAACCGTCCTCCTTCCCTCCCTCCCTCCATCCTC
TTCACCCCTTGAAAGCCCCCCGCTTCGAGATCAAGAAATGGAACGCGGTG
ACGATGTGGTCGTGGGACATATGCGCGGACACGTGCGCCATCTGTCGGAA
TAACCTCAACGAGCCTTCCATCGAGTACCAGGTACGTCCTCCCTCCCTCC
TTCCCCTCCTTTCTTCCTGTGCCTGTAGGTATTTCGTTGTCTCGAGCATC
CCCCTCCCTCTCACTCTCCTCTCTCGCCCTGCTCCAACCTATTTCTTAGC
AGCTGCTCAATCTCTCCCTTCCTCCCTCCCTCCCTCTTTCCCTCCCTACC
TCTCTCCCTTCCTCTTTCCCTCCCTCCCTCCCCCCTCCCTACCTCCCGCT
AGGCCAACCCCTCCCCCAACAACGAGAACGGCCTCTCCATCGCCTTCGGC
TGCTGCTCCCACGTGTTCCACCTCGACTGCATTCAGGTAGCTTCACAACC
TGCCTGGCCTGGTTTTGCCTTCCTCCCACTCCCTTTCTCTCCCCTCGCTC
CCACTTTCTCCTCCTTGTCTCTTTCCACCCTCAGTGATAACAATAATGAG
GACATCGCGCCCTCCCTCCCTCCCTCTTTCCCTCCCTCTTTCCCTCCCTC
CCTCCCCTCACTAGCGCTGGCTCAAGGCTCGGTCCGTCTGCCCCCTGTGT
AACAAGGAGTGGGAATTCAGTAAGATCGAGCGCATCCCCGGCTACAACGC
CCTGGGCATTTAAGCAATTTGCTCAGTGGGCTTGCTTTCTTCTCTTCCCT
CCCTCTCTCCTTTGGGGACTGGGTGGGGGAGGGTGTGATGAGCAGGAGGA
AGAGGGAGAGATGTAGGAGATAGTGGACATGTTCATAGTGAAAGAAAAAG
AAGATGGAAAAGGAGAAGAAAAAGTAAAAGAATAAGAACAAGGCGAACGT
GGGAAGGAGGGTGGGCAAGCGAGGCAATATTATTAAGACGACAAAAAGGA
AAATAAAGAGAAAAGGAAGATTACTCACGTATGAGCACGGCGATGGTGTT
GCTTTGCGCATGGCCGCATCATACTGCGCCTTGGCGGTGTCAAAAGGTGG
GTAGAAAAGGGAAAGGCGGCTTTCCTGACCTAGCAACTTGAACGTGTTCG
TCGGTCCGCTTGGAGGAAAATGGGCCGTTGTGAGCACCAGGCACGTCTTT
TGGAGTGGGAGAGGGTGTCTTGCACTCCTCTTGAGCATATTGGGACTCTC
CCTGCGGGATTCAGCATGGACATTTTGAAATTTCATGCGCTCGAGCTTAT
GTTTGGTGTTGTTGTCGGGCGTTCCCCTTCTCCACTCTCTCTCTGTCTTG
CTCCTCCGGGGGGAGTCCTCCCCAATAATTGCACCACATGGGACGTGGAC
GAGTAACCCTACTCCGCCATATTTATCATTTACATCGTCCCTCGTCTTTA
CTGATACAGCAGCCACATCCCTCACTCTTTCACCAACAAATCACACAGGC
CGTCGCCGCAAACAAAGAGAGGCAGCAAAGGGGAAATCAACCATGTGCTA
CGAAGTGACCTGTCGAGGATGCGGGAACGCCACCTTCGGCGGATGCGGGC
GTCACGTCGCCGCGGTACGTCTAAGAGGGCAACTTTTTCAGGAGATAAAT
CTGAATATTTTATAGGGAAGGTCGCTTTGCACTTCTTCTGTCTTCGCTTG
CCGTGCTGGACTAATGTGCACGCTGCGAGCAATGGGGTCACATTGCTTCG
TGTATACATGTACCATCGTCTAACGCACCCAAACATGCATATACAGGTGA
AGGCCGAGGTGGCCCAGGCTGGGCGACAGTGGTGTACTTGTGATGCAGAG
AAACCCACGACAAAACCTTCCATGC back to topCoding sequence (CDS) from alignment at scaffold_9:1..2725- >mRNA_4561 ID=mRNA_4561|Name=jgi.p|Nanoce1779_2|586943|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_9:1..2725- (Nannochloropsis oceanica)
CGCTGGCTCAAGGCTCGGTCCGTCTGCCCCCTGTGTAACAAGGAGTGGGA
ATTCAGTAAGATCGAGCGCATCCCCGGCTACAACGCCCTGGGCATTTAAG
CCAACCCCTCCCCCAACAACGAGAACGGCCTCTCCATCGCCTTCGGCTGC
TGCTCCCACGTGTTCCACCTCGACTGCATTCAGCCCCCCGCTTCGAGATC
AAGAAATGGAACGCGGTGACGATGTGGTCGTGGGACATATGCGCGGACAC
GTGCGCCATCTGTCGGAATAACCTCAACGAGCCTTCCATCGAGTACCAGG
AGGGGCAGCAGAAAGCGGTGGAGGGCCAACCAGTGGCACTGGCACGGCGC
CTGCGGGGGGTGCAGATGGCAGAGGAAGCCAAAACGGTGGGCATGGACGA
GGACCGGCCAGCGCCTGGAGCGCTGGCTCAAGGCTCGGTCCGTCTGCCCC
CTGTGTAACAAGGAGTGGGAATTCAGTAAGATCGAGCGCATCCCCGGCTA
CAACGCCCTGGGCATTTAAGCCAACCCCTCCCCCAACAACGAGAACGGCC
TCTCCATCGCCTTCGGCTGCTGCTCCCACGTGTTCCACCTCGACTGCATT
CAGCCCCCCGCTTCGAGATCAAGAAATGGAACGCGGTGACGATGTGGTCG
TGGGACATATGCGCGGACACGTGCGCCATCTGTCGGAATAACCTCAACGA
GCCTTCCATCGAGTACCAGGAGGGGCAGCAGAAAGCGGTGGAGGGCCAAC
CAGTGGCACTGGCACGGCGCCTGCGGGGGGTGCAGATGGCAGAGGAAGCC
AAAACGGTGGGCATGGACGAGGACCGGCCAGCGCCTGGAGCGCTGGCTCA
AGGCTCGGTCCGTCTGCCCCCTGTGTAACAAGGAGTGGGAATTCAGTAAG
ATCGAGCGCATCCCCGGCTACAACGCCCTGGGCATTTAAGCCAACCCCTC
CCCCAACAACGAGAACGGCCTCTCCATCGCCTTCGGCTGCTGCTCCCACG
TGTTCCACCTCGACTGCATTCAGCCCCCCGCTTCGAGATCAAGAAATGGA
ACGCGGTGACGATGTGGTCGTGGGACATATGCGCGGACACGTGCGCCATC
TGTCGGAATAACCTCAACGAGCCTTCCATCGAGTACCAGGAGGGGCAGCA
GAAAGCGGTGGAGGGCCAACCAGTGGCACTGGCACGGCGCCTGCGGGGGG
TGCAGATGGCAGAGGAAGCCAAAACGGTGGGCATGGACGAGGACCGGCCA
GCGCCTGGAGCGCTGGCTCAAGGCTCGGTCCGTCTGCCCCCTGTGTAACA
AGGAGTGGGAATTCAGTAAGATCGAGCGCATCCCCGGCTACAACGCCCTG
GGCATTTAAGCCAACCCCTCCCCCAACAACGAGAACGGCCTCTCCATCGC
CTTCGGCTGCTGCTCCCACGTGTTCCACCTCGACTGCATTCAGCCCCCCG
CTTCGAGATCAAGAAATGGAACGCGGTGACGATGTGGTCGTGGGACATAT
GCGCGGACACGTGCGCCATCTGTCGGAATAACCTCAACGAGCCTTCCATC
GAGTACCAGGAGGGGCAGCAGAAAGCGGTGGAGGGCCAACCAGTGGCACT
GGCACGGCGCCTGCGGGGGGTGCAGATGGCAGAGGAAGCCAAAACGGTGG
GCATGGACGAGGACCGGCCAGCGCCTGGAGCGCTGGCTCAAGGCTCGGTC
CGTCTGCCCCCTGTGTAACAAGGAGTGGGAATTCAGTAAGATCGAGCGCA
TCCCCGGCTACAACGCCCTGGGCATTTAAGCCAACCCCTCCCCCAACAAC
GAGAACGGCCTCTCCATCGCCTTCGGCTGCTGCTCCCACGTGTTCCACCT
CGACTGCATTCAGCCCCCCGCTTCGAGATCAAGAAATGGAACGCGGTGAC
GATGTGGTCGTGGGACATATGCGCGGACACGTGCGCCATCTGTCGGAATA
ACCTCAACGAGCCTTCCATCGAGTACCAGGAGGGGCAGCAGAAAGCGGTG
GAGGGCCAACCAGTGGCACTGGCACGGCGCCTGCGGGGGGTGCAGATGGC
AGAGGAAGCCAAAACGGTGGGCATGGACGAGGACCGGCCAGCGCCTGGAG back to top
|