jgi.p|Nanoce1779_2|623269, mRNA_4560 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623269
Unique NamemRNA_4560
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length498
Alignment locationscaffold_10:942601..943717 -

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Properties
Property NameValue
TranscriptId623355
TrackFilteredModels2
ProteinId623269
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:942601..943717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623269gene_4560Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623269mRNA_4560-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4560CDS_4560Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4560 ID=mRNA_4560|Name=jgi.p|Nanoce1779_2|623269|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
ATGGACCCCGACACGTTTGCGTGCTTGCCGGAAGATATACAGAGAGAGCT
GATTCGAGAGCATGCTGCTTCCTCCTCCTCGTCCTCCATGGCTGCCCAAA
GCAGCCTCGACCCGGAGGCACTCTCCGCCCTCCCCGAGGCCCTTCGAAAC
GAGGTCCTGGCGGAGGAAGCGAGAGAACGCCGGCTCCGCGAGGACGCGGC
GGCTGCCCCTCCAGCCAACCCGGCCAATGCGCTCGACATGGACCCCGCCT
CTTTCTTGGCCTCCCTCGCGCCCGATCTCCGGGATGAGGTGTTGCTGCAG
TTTCCCGATGAGGTCCTCGCGACCCTCCCCCTCAACCTGAGGACGGAAGC
TCAGGTCGTCAGAGAGCGGGCAGCGAGGCACCAGGAGAGGGGACGGCAGG
CGCAAGCAGCGGCGGCTGCGACGTTGACCTCTGCGGGAGGAGGAAGGGGG
GGGGGGATGGGGGGAGGACTAGCCCGAGGGTGCGTGTGGACATGGTGA
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protein sequence of jgi.p|Nanoce1779_2|623269

>mRNA_4560-protein ID=mRNA_4560-protein|Name=jgi.p|Nanoce1779_2|623269|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MDPDTFACLPEDIQRELIREHAASSSSSSMAAQSSLDPEALSALPEALRN
EVLAEEARERRLREDAAAAPPANPANALDMDPASFLASLAPDLRDEVLLQ
FPDEVLATLPLNLRTEAQVVRERAARHQERGRQAQAAAAATLTSAGGGRG
GGMGGGLARGCVWTW*
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mRNA from alignment at scaffold_10:942601..943717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4560 ID=mRNA_4560|Name=jgi.p|Nanoce1779_2|623269|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at scaffold_10:942601..943717- (Nannochloropsis oceanica)
ATGGACCCCGACACGTTTGCGTGCTTGCCGGAAGATATACAGAGAGAGCT
GATTCGAGAGCATGCTGCTTCCTCCTCCTCGTCCTCCATGGCTGCCCAAA
GCAGCCTCGACCCGGAGGCACTCTCCGCCCTCCCCGAGGCCCTTCGAAAC
GAGGTCCTGGCGGAGGAAGCGAGAGAACGCCGGCTCCGCGAGGACGCGGC
GGCTGCCCCTCCAGCCAACCCGGCCAATGCGCTCGACATGGACCCCGCCT
CTTTCTTGGCCTCCCTCGCGCCCGATCTCCGGGATGAGGTGTTGCTGCAG
TTTCCCGATGAGGTCCTCGCGACCCTCCCCCTCAACCTGAGGACGGAAGC
TCAGGTCGTCAGAGAGCGGGCAGCGAGGCACCAGGAGAGGGGACGGCAGG
CGCAAGCAGCGGCGGCTGCGACGTTGACCTCTGCGGGAGGAGGAAGGGGG
GGGGGGATGGGGGGAGGGTTGTTGGGGCCCGGGGGAGGATCGGTGTATAT
GTTTGGGAGAGGAGGCGGAGGCGGAGGAGGAGGGGGAGGGGGAGGGGGAG
GGGGAGGTGGAAGTGGAGGTGAAAATGGAGGGGGACGATTCCCGGGAGGG
AGGGAGGGAAGGCTGGAGCTTCCTCCCGTTCCTCCCGGCTTCATTCGAGT
GGAGGCAGATCGGTCGGAGCCCCTGCCCTTGTCGGCGTCCGCCCTGCGTT
CCCTGCTCAAGCTGCTCTTCCTCTCCACCTCTCTCCGTCCCCGCCTGACC
CTTTCCAGGTGCCTGCTGAATCTGTGCGGGTCCCGACCGCACCGACATGC
CCTTCTTCCCTGCCTTGTCTTTCTCCTGACGGGGAGGGAGAAGGAGGCGA
GGAGGGCAGTGGCAAATTTGCCCGAAATGGAAGAGGAGGCAGAAGAGACA
GAGGGAAGGAAGGAGGAAGGGAGAGAGGAAGGCTTTCCTCCACAACGGCT
GCTCGGGCCAGTCTCAGATATGCTGGCGGCGTCGTCGTCGTCTGTGGCTA
TGGGGGAGGGAGGGAGGCAGGGAGGGAGGGAGGTGCCGATGCAGGCTGCG
AGGCATATCGCCGATTTGCTTCTGTTTTTGTGTCAGACTAGCCCGAGGGT
GCGTGTGGACATGGTGA
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Coding sequence (CDS) from alignment at scaffold_10:942601..943717-

>mRNA_4560 ID=mRNA_4560|Name=jgi.p|Nanoce1779_2|623269|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_10:942601..943717- (Nannochloropsis oceanica)
ACTAGCCCGAGGGTGCGTGTGGACATGGTGAATGGACCCCGACACGTTTG
CGTGCTTGCCGGAAGATATACAGAGAGAGCTGATTCGAGAGCATGCTGCT
TCCTCCTCCTCGTCCTCCATGGCTGCCCAAAGCAGCCTCGACCCGGAGGC
ACTCTCCGCCCTCCCCGAGGCCCTTCGAAACGAGGTCCTGGCGGAGGAAG
CGAGAGAACGCCGGCTCCGCGAGGACGCGGCGGCTGCCCCTCCAGCCAAC
CCGGCCAATGCGCTCGACATGGACCCCGCCTCTTTCTTGGCCTCCCTCGC
GCCCGATCTCCGGGATGAGGTGTTGCTGCAGTTTCCCGATGAGGTCCTCG
CGACCCTCCCCCTCAACCTGAGGACGGAAGCTCAGGTCGTCAGAGAGCGG
GCAGCGAGGCACCAGGAGAGGGGACGGCAGGCGCAAGCAGCGGCGGCTGC
GACGTTGACCTCTGCGGGAGGAGGAAGGGGGGGGGGGATGGGGGGAGGAC
TAGCCCGAGGGTGCGTGTGGACATGGTGAATGGACCCCGACACGTTTGCG
TGCTTGCCGGAAGATATACAGAGAGAGCTGATTCGAGAGCATGCTGCTTC
CTCCTCCTCGTCCTCCATGGCTGCCCAAAGCAGCCTCGACCCGGAGGCAC
TCTCCGCCCTCCCCGAGGCCCTTCGAAACGAGGTCCTGGCGGAGGAAGCG
AGAGAACGCCGGCTCCGCGAGGACGCGGCGGCTGCCCCTCCAGCCAACCC
GGCCAATGCGCTCGACATGGACCCCGCCTCTTTCTTGGCCTCCCTCGCGC
CCGATCTCCGGGATGAGGTGTTGCTGCAGTTTCCCGATGAGGTCCTCGCG
ACCCTCCCCCTCAACCTGAGGACGGAAGCTCAGGTCGTCAGAGAGCGGGC
AGCGAGGCACCAGGAGAGGGGACGGCAGGCGCAAGCAGCGGCGGCTGCGA
CGTTGACCTCTGCGGGAGGAGGAAGGGGGGGGGGGATGGGGGGAGG
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Synonyms
Publications