jgi.p|Nanoce1779_2|577371, mRNA_456 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577371
Unique NamemRNA_456
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length599
Alignment locationscaffold_3:1118324..1118922 -

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Properties
Property NameValue
TranscriptId577457
TrackFilteredModels2
ProteinId577371
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1118324..1118922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577371gene_456Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577371mRNA_456-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_456CDS_456Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_456 ID=mRNA_456|Name=jgi.p|Nanoce1779_2|577371|organism=Nannochloropsis oceanica|type=mRNA|length=599bp
CCTCGCCTTCCTCTTTTTCCTCCTTCTCCCTTTCCTCCTCCTTGCCACGC
TTGCAAAGGCTGCTGCTGCTGCTGTTGCTGCGAGTCATATTGCTGCTGCT
GGGATTGAACTTGCTGGTTCTGTCGCAGGTGTTGTGGCTGCTGGTGCTGC
TGTGGTGGTGATGCTCGCTGCTGTAGATGCTGCTGCTGATATTGATGCGG
TTGGTGCTGTGGATACTGTTGCTGCTGATATCGCGGGGGATGGGGCCGGT
GGTAGGGCATGAGTGGTGGTGCTTGCTGCTGCTGCTGCTGCTGCTGCTGC
GGCTGCTTGGAACCTCCCCCTGTCACGGCCGGGCAATTCGTCACCCAGTG
AGCTCCACGCTGCCCGCAGGAATGGCAGACGTACGTCTCCGGCGGGGGAG
GGCCGCTGGAGTAGGCTGCGATGCTTTGGTGGTGGGGAGCTGGAGGAAGA
GGAGCATAGCCGGGGTAGGGCGTGGGGGACGGGTAATTTCCATAGAGACT
GGGCGTATAGTCCGCATGCTGTTTTTGCTGCGACTGCTGTGGAGCTAATG
ACCTGCCCGCATAGACGTAGGGGTTCTGGTACATGGCTGGCGGGCTGTT
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protein sequence of jgi.p|Nanoce1779_2|577371

>mRNA_456-protein ID=mRNA_456-protein|Name=jgi.p|Nanoce1779_2|577371|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MLLLILMRLVLWILLLLISRGMGPVVGHEWWCLLLLLLLLLRLLGTSPCH
GRAIRHPVSSTLPAGMADVRLRRGRAAGVGCDALVVGSWRKRSIAGVGRG
GRVISIETGRIVRMLFLLRLLWS*
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mRNA from alignment at scaffold_3:1118324..1118922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_456 ID=mRNA_456|Name=jgi.p|Nanoce1779_2|577371|organism=Nannochloropsis oceanica|type=mRNA|length=599bp|location=Sequence derived from alignment at scaffold_3:1118324..1118922- (Nannochloropsis oceanica)
CCTCGCCTTCCTCTTTTTCCTCCTTCTCCCTTTCCTCCTCCTTGCCACGC
TTGCAAAGGCTGCTGCTGCTGCTGTTGCTGCGAGTCATATTGCTGCTGCT
GGGATTGAACTTGCTGGTTCTGTCGCAGGTGTTGTGGCTGCTGGTGCTGC
TGTGGTGGTGATGCTCGCTGCTGTAGATGCTGCTGCTGATATTGATGCGG
TTGGTGCTGTGGATACTGTTGCTGCTGATATCGCGGGGGATGGGGCCGGT
GGTAGGGCATGAGTGGTGGTGCTTGCTGCTGCTGCTGCTGCTGCTGCTGC
GGCTGCTTGGAACCTCCCCCTGTCACGGCCGGGCAATTCGTCACCCAGTG
AGCTCCACGCTGCCCGCAGGAATGGCAGACGTACGTCTCCGGCGGGGGAG
GGCCGCTGGAGTAGGCTGCGATGCTTTGGTGGTGGGGAGCTGGAGGAAGA
GGAGCATAGCCGGGGTAGGGCGTGGGGGACGGGTAATTTCCATAGAGACT
GGGCGTATAGTCCGCATGCTGTTTTTGCTGCGACTGCTGTGGAGCTAATG
ACCTGCCCGCATAGACGTAGGGGTTCTGGTACATGGCTGGCGGGCTGTT
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Coding sequence (CDS) from alignment at scaffold_3:1118324..1118922-

>mRNA_456 ID=mRNA_456|Name=jgi.p|Nanoce1779_2|577371|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_3:1118324..1118922- (Nannochloropsis oceanica)
ATGCTGCTGCTGATATTGATGCGGTTGGTGCTGTGGATACTGTTGCTGCT
GATATCGCGGGGGATGGGGCCGGTGGTAGGGCATGAGTGGTGGTGCTTGC
TGCTGCTGCTGCTGCTGCTGCTGCGGCTGCTTGGAACCTCCCCCTGTCAC
GGCCGGGCAATTCGTCACCCAGTGAGCTCCACGCTGCCCGCAGGAATGGC
AGACGTACGTCTCCGGCGGGGGAGGGCCGCTGGAGTAGGCTGCGATGCTT
TGGTGGTGGGGAGCTGGAGGAAGAGGAGCATAGCCGGGGTAGGGCGTGGG
GGACGGGTAATTTCCATAGAGACTGGGCGTATAGTCCGCATGCTGTTTTT
GCTGCGACTGCTGTGGAGCTAA
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Synonyms
Publications