jgi.p|Nanoce1779_2|27398, mRNA_4558 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|27398
Unique NamemRNA_4558
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length853
Alignment locationscaffold_10:941014..942158 -

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Properties
Property NameValue
TranscriptId27484
TrackFilteredModels2
ProteinId27398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:941014..942158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|27398gene_4558Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|27398mRNA_4558-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4558CDS_4558Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4558 ID=mRNA_4558|Name=jgi.p|Nanoce1779_2|27398|organism=Nannochloropsis oceanica|type=mRNA|length=853bp
TGCTCCTGCTCCTACTTCATCTCCTTCTCTCTCTGCTTCTCGTGCAGAAG
CCAAGGCAGATGGGGGCCCAGCTTCTTCAGACGCGGCCACCGCCGCCGGA
GCACCAGCAGCAGGAGCAGCAGGAGCAGCAGCGGAGCCAAAAGGCCAGCC
GTCCTCTCTCTTTGCCACTGTGGAGGTGCCCGGGCTCATCCTGGGGCCTA
GGCGCCTGCAACGGTTATGCGGGGTGTTTTTGGAAGAGACATGCAGCGAC
ACCACGTGCTACCGCGTGAACAAGATAGCAGGGGCTCTCTCCAGGGTGCC
GGCGAACAGGATGCATTTGCTTCAGGAGCTGCTGTCGGTGGCTGGCGGGT
TAGGTGCCACTGCTCTCGATGAGCTCGGATCCCTCCATCACGCCCTGTCT
GGTCTGCTCGACGTCCATGACCCGGAGGATGGCGAGGACGAGGGCAAGGA
GAAGGAGGAGAAGACGAAGACGAGAACGGAGAAGCGGAAGAGGAGCATTC
CTGCGTCGGTGGTGACCTTGTCGGCCAAGAGCAGTGAAATCAAACTACTC
CGGGTGCTGCAGACGATCATGGCCTTGGCCGAGAAGGGGGTCCCGAGGAA
GGAGAAAGAGGAGGGGGAGGAGGATGAGGACGAGGAAGAGGAAGAGCAGG
ACGCCCCTATGGCTGATTCAGCACGAGGAGTAGGAGTAGCAGAGTCCAAA
CCTGAAGCTACTCCTCCTGCTGTTGCGAACACAGCAGCAGCAGCAGCAGC
AGCAAGAGCGGCAGCAGTAACAGCAGTGTAAGTGGCGATGACGGTATGGT
TGTAGATAATAGGGCCGACCGAAGCGACAATGCGGCGGCCATGGCGGGGG
AGG
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protein sequence of jgi.p|Nanoce1779_2|27398

>mRNA_4558-protein ID=mRNA_4558-protein|Name=jgi.p|Nanoce1779_2|27398|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MHLLQELLSVAGGLGATALDELGSLHHALSGLLDVHDPEDGEDEGKEKEE
KTKTRTEKRKRSIPASVVTLSAKSSEIKLLRVLQTIMALAEKGVPRKEKE
EGEEDEDEEEEEQDAPMADSARGVGVAESKPEATPPAVANTAAAAAAARA
AAVTAV*
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mRNA from alignment at scaffold_10:941014..942158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4558 ID=mRNA_4558|Name=jgi.p|Nanoce1779_2|27398|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp|location=Sequence derived from alignment at scaffold_10:941014..942158- (Nannochloropsis oceanica)
TGCTCCTGCTCCTACTTCATCTCCTTCTCTCTCTGCTTCTCGTGCAGAAG
CCAAGGCAGATGGGGGCCCAGCTTCTTCAGACGCGGCCACCGCCGCCGGA
GCACCAGCAGCAGGAGCAGCAGGAGCAGCAGCGGAGCCAAAAGGCCAGCC
GTCCTCTCTCTTTGCCACTGTGGAGGTGCCCGGGCTCATCCTGGGGCCTA
GGCGCCTGCAACGGTTATGCGGGGTGTTTTTGGAAGAGACATGCAGCGAC
ACCACGTGCTACCGCGTGAACAAGATAGCAGGGGCTCTCTCCAGGGTGCC
GGCGAACAGGATGCATTTGCTTCAGGTGCGCCCCATTCCCTCCCCCCCTT
TTTCTCTACCTTTCCCCCCCCCGTCCTCCTTGCCTTTGCACCAGTCTCTC
TCTGAGCTCCCCCCCCTCACACCTTCCCCTCTCTTGCCCTCCCTCCCTCC
TTCCTTTTCCCCTCAGGAGCTGCTGTCGGTGGCTGGCGGGTTAGGTGCCA
CTGCTCTCGATGAGCTCGGATCCCTCCATCACGCCCTGTCTGGTCTGCTC
GACGTCCATGACCCGGAGGATGGCGAGGACGAGGGCAAGGAGAAGGAGGA
GAAGACGAAGACGAGAACGGAGAAGCGGAAGAGGAGCATTCCTGCGTCGG
TGGTGACCTTGTCGGCCAAGAGCAGTGAAATCAAACTACTCCGGGTGCTG
CAGACGATCATGGCCTTGGCCGAGAAGGGGGTCCCGAGGAAGGAGAAAGA
GGAGGGGGAGGAGGATGAGGACGAGGAAGAGGAAGAGCAGGACGCCCCTA
TGGCTGATTCAGCACGAGGAGTAGGAGTAGCAGAGTCCAAACCTGAAGCT
ACTCCTCCTGCTGTTGCGAACAGTCCCATTTCCTCCCTCCAGCCCTCGTC
CTCGTCCTCAGCTGTAGGGAGCGAGCATTTACTGCGTCAGATAAATCTGG
CGTCTCTGTGGGACGCCCTGAGTAAGTGTTTGTCCGTCATTGCGGTGCTG
GAGGGGCTGTCGGATGGGGCGAGCAGCAGCAGCAGCAGCAGCAGCAAGAG
CGGCAGCAGTAACAGCAGTGTAAGTGGCGATGACGGTATGGTTGTAGATA
ATAGGGCCGACCGAAGCGACAATGCGGCGGCCATGGCGGGGGAGG
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Coding sequence (CDS) from alignment at scaffold_10:941014..942158-

>mRNA_4558 ID=mRNA_4558|Name=jgi.p|Nanoce1779_2|27398|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_10:941014..942158- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAAGAGCGGCAGCAGTAACAGCAGTGTAA
GAGCTGCTGTCGGTGGCTGGCGGGTTAGGTGCCACTGCTCTCGATGAGCT
CGGATCCCTCCATCACGCCCTGTCTGGTCTGCTCGACGTCCATGACCCGG
AGGATGGCGAGGACGAGGGCAAGGAGAAGGAGGAGAAGACGAAGACGAGA
ACGGAGAAGCGGAAGAGGAGCATTCCTGCGTCGGTGGTGACCTTGTCGGC
CAAGAGCAGTGAAATCAAACTACTCCGGGTGCTGCAGACGATCATGGCCT
TGGCCGAGAAGGGGGTCCCGAGGAAGGAGAAAGAGGAGGGGGAGGAGGAT
GAGGACGAGGAAGAGGAAGAGCAGGACGCCCCTATGGCTGATTCAGCACG
AGGAGTAGGAGTAGCAGAGTCCAAACCTGAAGCTACTCCTCCTGCTGTTG
CGAACAATGCATTTGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCG
GCAGCAGTAACAGCAGTGTAAGAGCTGCTGTCGGTGGCTGGCGGGTTAGG
TGCCACTGCTCTCGATGAGCTCGGATCCCTCCATCACGCCCTGTCTGGTC
TGCTCGACGTCCATGACCCGGAGGATGGCGAGGACGAGGGCAAGGAGAAG
GAGGAGAAGACGAAGACGAGAACGGAGAAGCGGAAGAGGAGCATTCCTGC
GTCGGTGGTGACCTTGTCGGCCAAGAGCAGTGAAATCAAACTACTCCGGG
TGCTGCAGACGATCATGGCCTTGGCCGAGAAGGGGGTCCCGAGGAAGGAG
AAAGAGGAGGGGGAGGAGGATGAGGACGAGGAAGAGGAAGAGCAGGACGC
CCCTATGGCTGATTCAGCACGAGGAGTAGGAGTAGCAGAGTCCAAACCTG
AAGCTACTCCTCCTGCTGTTGCGAACAATGCATTTGCTTCAGCAGCAGCA
GCAGCAGCAGCAGCAAGAGCGGCAGCAGTAACAGCAGTGTAAGAGCTGCT
GTCGGTGGCTGGCGGGTTAGGTGCCACTGCTCTCGATGAGCTCGGATCCC
TCCATCACGCCCTGTCTGGTCTGCTCGACGTCCATGACCCGGAGGATGGC
GAGGACGAGGGCAAGGAGAAGGAGGAGAAGACGAAGACGAGAACGGAGAA
GCGGAAGAGGAGCATTCCTGCGTCGGTGGTGACCTTGTCGGCCAAGAGCA
GTGAAATCAAACTACTCCGGGTGCTGCAGACGATCATGGCCTTGGCCGAG
AAGGGGGTCCCGAGGAAGGAGAAAGAGGAGGGGGAGGAGGATGAGGACGA
GGAAGAGGAAGAGCAGGACGCCCCTATGGCTGATTCAGCACGAGGAGTAG
GAGTAGCAGAGTCCAAACCTGAAGCTACTCCTCCTGCTGTTGCGAACAAT
GCATTTGCTTCAG
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Synonyms
Publications