jgi.p|Nanoce1779_2|589578, mRNA_4555 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589578
Unique NamemRNA_4555
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length484
Alignment locationscaffold_10:933084..933567 +

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Properties
Property NameValue
TranscriptId589664
TrackFilteredModels2
ProteinId589578
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:933084..933567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589578gene_4555Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589578mRNA_4555-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4555CDS_4555Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4555 ID=mRNA_4555|Name=jgi.p|Nanoce1779_2|589578|organism=Nannochloropsis oceanica|type=mRNA|length=484bp
CCTCCCCTTCTCCGCTGCTGTCACCTCGCTTCCCAGGCTGATCCTGTATG
CACGACGGAGGCAGCAAGAGGCTGCCATCGACGTCACCATTGCTTCCGTT
GTTGTTTGGGTGGACGTTGTTCAGCGGTTGGCTGCTACTGAGAGAGGGGC
CGCTTAAGGGCGAAGGCGCCCCGGAAGACAAGCATCCAAGTTCCTCTTCC
AAGCCCGCCAATATCTCTTGCTCATCCGCCAGGGACATAACTATTGGGAA
TGGATGGCGGGTGTGGTGTGAGTGGTTTATTGTGCCGCCACTATGTGGTG
CATGTCTTGGTCGCATGGGAGGCTGGAATAAAGAAGGATATGCGTCGGTT
GTCGTCGGCTGCTTGGGAGTGGGGGTTTATTTTCTTCTGCCGCGCTTGTG
GGTGGGGCTGGTCTCATGCTCTGCTGACACAGTGCATAGGCAGAGGTGAT
GTATAGAATGAGAAAGCCATGGTCGTGACAAAGT
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protein sequence of jgi.p|Nanoce1779_2|589578

>mRNA_4555-protein ID=mRNA_4555-protein|Name=jgi.p|Nanoce1779_2|589578|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MHDGGSKRLPSTSPLLPLLFGWTLFSGWLLLREGPLKGEGAPEDKHPSSS
SKPANISCSSARDITIGNGWRVWCEWFIVPPLCGACLGRMGGWNKEGYAS
VVVGCLGVGVYFLLPRLWVGLVSCSADTVHRQR*
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mRNA from alignment at scaffold_10:933084..933567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4555 ID=mRNA_4555|Name=jgi.p|Nanoce1779_2|589578|organism=Nannochloropsis oceanica|type=mRNA|length=484bp|location=Sequence derived from alignment at scaffold_10:933084..933567+ (Nannochloropsis oceanica)
CCTCCCCTTCTCCGCTGCTGTCACCTCGCTTCCCAGGCTGATCCTGTATG
CACGACGGAGGCAGCAAGAGGCTGCCATCGACGTCACCATTGCTTCCGTT
GTTGTTTGGGTGGACGTTGTTCAGCGGTTGGCTGCTACTGAGAGAGGGGC
CGCTTAAGGGCGAAGGCGCCCCGGAAGACAAGCATCCAAGTTCCTCTTCC
AAGCCCGCCAATATCTCTTGCTCATCCGCCAGGGACATAACTATTGGGAA
TGGATGGCGGGTGTGGTGTGAGTGGTTTATTGTGCCGCCACTATGTGGTG
CATGTCTTGGTCGCATGGGAGGCTGGAATAAAGAAGGATATGCGTCGGTT
GTCGTCGGCTGCTTGGGAGTGGGGGTTTATTTTCTTCTGCCGCGCTTGTG
GGTGGGGCTGGTCTCATGCTCTGCTGACACAGTGCATAGGCAGAGGTGAT
GTATAGAATGAGAAAGCCATGGTCGTGACAAAGT
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Coding sequence (CDS) from alignment at scaffold_10:933084..933567+

>mRNA_4555 ID=mRNA_4555|Name=jgi.p|Nanoce1779_2|589578|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_10:933084..933567+ (Nannochloropsis oceanica)
ATGCACGACGGAGGCAGCAAGAGGCTGCCATCGACGTCACCATTGCTTCC
GTTGTTGTTTGGGTGGACGTTGTTCAGCGGTTGGCTGCTACTGAGAGAGG
GGCCGCTTAAGGGCGAAGGCGCCCCGGAAGACAAGCATCCAAGTTCCTCT
TCCAAGCCCGCCAATATCTCTTGCTCATCCGCCAGGGACATAACTATTGG
GAATGGATGGCGGGTGTGGTGTGAGTGGTTTATTGTGCCGCCACTATGTG
GTGCATGTCTTGGTCGCATGGGAGGCTGGAATAAAGAAGGATATGCGTCG
GTTGTCGTCGGCTGCTTGGGAGTGGGGGTTTATTTTCTTCTGCCGCGCTT
GTGGGTGGGGCTGGTCTCATGCTCTGCTGACACAGTGCATAGGCAGAGGT
GA
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Synonyms
Publications