jgi.p|Nanoce1779_2|589542, mRNA_4550 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589542
Unique NamemRNA_4550
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length954
Alignment locationscaffold_10:906663..907616 -

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Properties
Property NameValue
TranscriptId589628
TrackFilteredModels2
ProteinId589542
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:906663..907616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589542gene_4550Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589542mRNA_4550-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4550CDS_4550Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4550 ID=mRNA_4550|Name=jgi.p|Nanoce1779_2|589542|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
CAGGTGAGCAAACACACAATGCGCTGCCTTGGTACCCTCCTTCTGCTGCC
CGCCCTGGCCAGCGCTTTCCTAATTCCCAGTGTTCCCTCTGCTCGCGCCC
GCACCTGCCTCAACGTTGGCTCCAATGCGAAGATCGATGTGCCCCCTGAC
CTGGAGGGGAAGCTTGATCCCAAGCGGTGCGTCGTCGTCTTGTGCCCCCC
CCGCCCTACTCTAGATATCATACCCTTCCTCCCTCTCGTTGATCATGCAT
TGAGATTCGTTGATCGCTGGCGAAGCGACCTTGCCACCCGTCCACTCACT
CGCCTTCCAACCACCATCCTCTCTCCAGTCACTGGGACGTAGTCATGACG
TTGAATGGCGAGACCAAGACCGTCTCTGTCAGTGAAGGCACATCCCTTTT
GGATGCAGCAGAAGAAGCTTTCGGGGACCCTCCTTGTATGTGCCGTAACG
GTGTCTGCACCACGTGTGCCGCGGAAGTGACCAAGGGCGGGCATGGCTCA
TGGGTGGCTGCCATCGAGTCTCTCTCGCCCGAGCAGCGTGATGCCGGTTT
CATCCTTTCGTGCCAAACGTACCCGTGTGGACCCGGCTTGGAAGTGCGAT
TGAATGCCCAGGAGGAGGTGTATGAAAGTCAGTACGCCAAATACGAGAAG
AAGGCGCACAGTGAGTTGGAGAAGAAGAAGGGGTTCAACATTTTCGCATA
AAGGAAAGGAAAATGATGTCCCCTGGCCCTAGCGCACTTAAACACCAGCT
GTCATGAGCGTAACAAAGACGAATGAGAGGAAGAGAAGATGAGGGGGGGA
ATTGAGTGTAGGAAAGAATGAGGAATGTGTGCATGCTTGGACAGATGGTG
AAGAAAGACGAGGAATGAAGTGAGGAAGGGAGGGAGGAAGGGATGGAGGG
AGAACGAAGGTGAAGAAGGGACGATGATCCAGAGCCACACCCCAAAAAGA
GGCC
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protein sequence of jgi.p|Nanoce1779_2|589542

>mRNA_4550-protein ID=mRNA_4550-protein|Name=jgi.p|Nanoce1779_2|589542|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGH
GSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKY
EKKAHSELEKKKGFNIFA*
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mRNA from alignment at scaffold_10:906663..907616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4550 ID=mRNA_4550|Name=jgi.p|Nanoce1779_2|589542|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at scaffold_10:906663..907616- (Nannochloropsis oceanica)
CAGGTGAGCAAACACACAATGCGCTGCCTTGGTACCCTCCTTCTGCTGCC
CGCCCTGGCCAGCGCTTTCCTAATTCCCAGTGTTCCCTCTGCTCGCGCCC
GCACCTGCCTCAACGTTGGCTCCAATGCGAAGATCGATGTGCCCCCTGAC
CTGGAGGGGAAGCTTGATCCCAAGCGGTGCGTCGTCGTCTTGTGCCCCCC
CCGCCCTACTCTAGATATCATACCCTTCCTCCCTCTCGTTGATCATGCAT
TGAGATTCGTTGATCGCTGGCGAAGCGACCTTGCCACCCGTCCACTCACT
CGCCTTCCAACCACCATCCTCTCTCCAGTCACTGGGACGTAGTCATGACG
TTGAATGGCGAGACCAAGACCGTCTCTGTCAGTGAAGGCACATCCCTTTT
GGATGCAGCAGAAGAAGCTTTCGGGGACCCTCCTTGTATGTGCCGTAACG
GTGTCTGCACCACGTGTGCCGCGGAAGTGACCAAGGGCGGGCATGGCTCA
TGGGTGGCTGCCATCGAGTCTCTCTCGCCCGAGCAGCGTGATGCCGGTTT
CATCCTTTCGTGCCAAACGTACCCGTGTGGACCCGGCTTGGAAGTGCGAT
TGAATGCCCAGGAGGAGGTGTATGAAAGTCAGTACGCCAAATACGAGAAG
AAGGCGCACAGTGAGTTGGAGAAGAAGAAGGGGTTCAACATTTTCGCATA
AAGGAAAGGAAAATGATGTCCCCTGGCCCTAGCGCACTTAAACACCAGCT
GTCATGAGCGTAACAAAGACGAATGAGAGGAAGAGAAGATGAGGGGGGGA
ATTGAGTGTAGGAAAGAATGAGGAATGTGTGCATGCTTGGACAGATGGTG
AAGAAAGACGAGGAATGAAGTGAGGAAGGGAGGGAGGAAGGGATGGAGGG
AGAACGAAGGTGAAGAAGGGACGATGATCCAGAGCCACACCCCAAAAAGA
GGCC
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Coding sequence (CDS) from alignment at scaffold_10:906663..907616-

>mRNA_4550 ID=mRNA_4550|Name=jgi.p|Nanoce1779_2|589542|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_10:906663..907616- (Nannochloropsis oceanica)
ATGACGTTGAATGGCGAGACCAAGACCGTCTCTGTCAGTGAAGGCACATC
CCTTTTGGATGCAGCAGAAGAAGCTTTCGGGGACCCTCCTTGTATGTGCC
GTAACGGTGTCTGCACCACGTGTGCCGCGGAAGTGACCAAGGGCGGGCAT
GGCTCATGGGTGGCTGCCATCGAGTCTCTCTCGCCCGAGCAGCGTGATGC
CGGTTTCATCCTTTCGTGCCAAACGTACCCGTGTGGACCCGGCTTGGAAG
TGCGATTGAATGCCCAGGAGGAGGTGTATGAAAGTCAGTACGCCAAATAC
GAGAAGAAGGCGCACAGTGAGTTGGAGAAGAAGAAGGGGTTCAACATTTT
CGCATAA
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Synonyms
Publications