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Properties
| Property Name | Value |
|---|
| TranscriptId | 630481 |
| Track | FilteredModels2 |
| ProteinId | 630395 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:903186..905499 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4548 ID=mRNA_4548|Name=jgi.p|Nanoce1779_2|630395|organism=Nannochloropsis oceanica|type=mRNA|length=1547bp
GGTGCTAGAGGTGGATCTGAAGTCGTTGGACAAGCTGTGATCACTCAAGC
GGATTCCTTCTCGAATGGTGGACAGCGCTCATAAATCCCACCACCCCCAA
GTCCTAGTCACCTTCACTACGATCACAGCGATAGGGAGCAGACGCAGAAG
AAGAAGAGAAGTTAATAATTTGATTAATGGGGCGGACGGAAGTGGGCGAA
AAGTAGCCCATTTCTAGAGTCCCCGGCATTACCACAACCCCTGCCTCCTT
GTGTATCACGCACCCCTACCTTATGTCTCAATTTTTCCAAAACCCTTGCA
TGATACCGGTCCCGTTCTTCGGTTGGGGGTGTCTGCTCGTCCGGCCCTAG
TCTACTTAAACCTCATGCCTTCCCACCCACAACAGCGCCGCACATCATGG
TGCTGATCAAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGC
GTCCAACTCACACAGACGGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGC
ACCACCAGCAGGAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACC
AGGGTAAAGAATTGGTAGAAGGCACAAACACCCTTTCCTCTTACCACGTT
TGCGAGAACGACCTTATCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTC
TTCCTCCATCCCTCCCTCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTC
CTGCTCCCGCTCCTGCTCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCC
ATCCCTCCTCCCAACCCGATGGTCGAACAACTGAAAGAGATGGGCTTCCC
CGAGTCTCAAGTGGTGGCAGCTCTTCGCGCGGCCAACCAAGACCTCAATG
TCGCAATCGAGTTCCTCTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCC
TCGTCCTCCCTCCCTTCCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGC
GGTGGGAGAGGGAGGGAGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGA
GGGGCCAAGCCGACCATATGACAGTGGCGCAATTTTTGAGCCACCCTGAG
ATGGAGAATATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATGGAAAG
TGCCATTGGCGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTTGATTA
ACGAAGATCCGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCGAGGAG
GGCGAGTTCGAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGAGGGGA
GGGGGGAGGGGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGAGCAGG
CAGTGGTGCGCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTGTGGAG
GCGTATTTATTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTGCTGTT
GGGTGGGTGAGAGAATGGAAGAATTGGATGGATAGGAGAACGATAAGACG
TAGCAGAGTATGAATGGGCGAGAGCTCTGAAAGAATGAAGAATATGTAGG
CAAAGACGATGACATTCATGGAACTTGGAGTATTGTCGCAACTTGTC back to topprotein sequence of jgi.p|Nanoce1779_2|630395 >mRNA_4548-protein ID=mRNA_4548-protein|Name=jgi.p|Nanoce1779_2|630395|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLI
HQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPVSSSIPPSTSSTPAPAP
APAPAPAPAPAPAPASTSIPPPNPMVEQLKEMGFPESQVVAALRAANQDL
NVAIEFLFSGNIPASPSSSSSLPSSASAGLDLMPAVGEGGRGGGEEGEES
MRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRL
INEDPTSFWAALEGGGEEGEFEEEEDEDVEGEGGEGGGVGILGELTEQDE
QAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLLGG* back to topmRNA from alignment at scaffold_10:903186..905499- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4548 ID=mRNA_4548|Name=jgi.p|Nanoce1779_2|630395|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at scaffold_10:903186..905499- (Nannochloropsis oceanica)
GGTGCTAGAGGTGGATCTGAAGTCGTTGGACAAGCTGTGATCACTCAAGC
GGATTCCTTCTCGAATGGTGGACAGCGCTCATAAATCCCACCACCCCCAA
GTCCTAGTCACCTTCACTACGATCACAGCGATAGGGAGCAGACGCAGAAG
AAGAAGAGAAGTTAATAATTTGATTAATGGGGCGGACGGAAGTGGGCGAA
AAGTAGCCCATTTCTAGAGTCCCCGGCATTACCACAACCCCTGCCTCCTT
GTGTATCACGCACCCCTACCTTATGTCTCAATTTTTCCAAAACCCTTGCA
TGATACCGGTCCCGTTCTTCGGTTGGGGGTGTCTGCTCGTCCGGCCCTAG
TCTACTTAAACCTCATGCCTTCCCACCCACAACAGCGCCGCACATCATGG
TGCTGATCAAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGC
GTCCAACTCACACAGACGGTACGTTGCCTGTGTTTGCTGGTCCTTCTTCC
CTCCCTTTCTCGCTCCCTCCGTCCCTAGAAGACAATGCTCTTCGGTTTAT
GGTAAGTACGGGCTCCCTTCTGCGTTTCCAGCAAAGTCTCCGACCGCTCT
TCCATCTTATTACAAGAAATTCCGCCATTTTTTTTTCGCATTTCTTCTCT
ATTTTCTGCAGCTCCATGTCAAGAATGAAGCATAGTCCGTCCTGACATAT
GCCCTTTTCTGCACCCCTCTTTCTCGTTCTCCCTTCCTTCCTCCTCCTTC
CTTTATTCTCGACAGGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACC
ACCAGCAGGAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACCAGG
GTAAGTCCATTTTAATTTAAAGAATCATACATGTATTAATTTATTATTAT
AATTCTTTTTCGTTCAATATTTTTTCTTCATATATAGCTACATCATGATA
TGGAAATATATAGAGTTCCTCTCTCATTTCGACTCAAACCACCTATATGC
TTCTCTCCTTTTCTTCCCGCGGGGCTAGCTACATGCAAAGTGCTCACCCA
TTCTCCCTTCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCTCTCTCCCTCCCTTCCTCTCTATAGG
TAAAGAATTGGTAGAAGGCACAAACACCCTTTCCTCTTACCACGTTTGCG
AGAACGACCTTATCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTTCC
TCCATCCCTCCCTCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCTGC
TCCCGCTCCTGCTCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCATCC
CTCCTCCCAACCCGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCGAG
TCTCAAGTGGTGGCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTCGC
AATCGAGTTCCTCTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTCGT
CCTCCCTCCCTTCCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGGTG
GGAGAGGGAGGGAGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGGGG
CCAAGCCGACCATATGACAGTGGCGCAATTTTTGAGCCACCCTGAGATGG
AGAATGTGAGTGCGGAGGAAGGGAGATGTTTACGGTGTAGATTACCTGTG
TATAATGCTCTGCATGCATAGCGGACGTGGGCTGCTGCATTGTACTCTCG
ATAACCTCAATGACATCTCTCATCTTCGCCCTCTTTCCCTCGCTCCCCTT
TCTTTCCCCACTCCCCCTTTTCCCAGATCCGACGCATCGTCCGCGAGAAC
CCGAGTAGTATGGAAAGTGCCATTGGCGCCCTCGCTGTCAGCCATCCAGA
CTTTGTGCGCTTGATTAACGAAGATCCGACAAGCTTTTGGGCCGCACTGG
AGGGCGGAGGCGAGGAGGGCGAGTTCGAGGAAGAGGAGGACGAGGACGTG
GAAGGAGAGGGAGGGGAGGGGGGAGGGGTGGGGATACTAGGAGAGTTGAC
GGAGCAAGATGAGCAGGCAGTGGTGCGCTTAATGGAGATGGGGTTTGGGA
GGGAGCAGGTTGTGGAGGCGTATTTATTGGCGGGGAAGGATGAAAATGGG
GCAGTTAATTTGCTGTTGGGTGGGTGAGAGAATGGAAGAATTGGATGGAT
AGGAGAACGATAAGACGTAGCAGAGTATGAATGGGCGAGAGCTCTGAAAG
AATGAAGAATATGTAGGCAAAGACGATGACATTCATGGAACTTGGAGTAT
TGTCGCAACTTGTC back to topCoding sequence (CDS) from alignment at scaffold_10:903186..905499- >mRNA_4548 ID=mRNA_4548|Name=jgi.p|Nanoce1779_2|630395|organism=Nannochloropsis oceanica|type=CDS|length=4056bp|location=Sequence derived from alignment at scaffold_10:903186..905499- (Nannochloropsis oceanica)
ATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATGGAAAGTGCCATTGG
CGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTTGATTAACGAAGATC
CGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCGAGGAGGGCGAGTTC
GAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGAGGGGAGGGGGGAGG
GGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGAGCAGGCAGTGGTGC
GCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTGTGGAGGCGTATTTA
TTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTGCTGTTGGGTGGGTG
AGTAAAGAATTGGTAGAAGGCACAAACACCCTTTCCTCTTACCACGTTTG
CGAGAACGACCTTATCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTT
CCTCCATCCCTCCCTCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCT
GCTCCCGCTCCTGCTCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCAT
CCCTCCTCCCAACCCGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCG
AGTCTCAAGTGGTGGCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTC
GCAATCGAGTTCCTCTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTC
GTCCTCCCTCCCTTCCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGG
TGGGAGAGGGAGGGAGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGG
GGCCAAGCCGACCATATGACAGTGGCGCAATTTTTGAGCCACCCTGAGAT
GGAGAATGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACCACCAGCAG
GAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACCAGGATGGTGCT
GATCAAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGCGTCC
AACTCACACAGACGATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATG
GAAAGTGCCATTGGCGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTT
GATTAACGAAGATCCGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCG
AGGAGGGCGAGTTCGAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGA
GGGGAGGGGGGAGGGGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGA
GCAGGCAGTGGTGCGCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTG
TGGAGGCGTATTTATTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTG
CTGTTGGGTGGGTGAGTAAAGAATTGGTAGAAGGCACAAACACCCTTTCC
TCTTACCACGTTTGCGAGAACGACCTTATCATCGTCATGCTCTCGCGTCC
GAAGCCCGTCTCTTCCTCCATCCCTCCCTCCACCTCTTCCACTCCCGCTC
CAGCTCCTGCTCCTGCTCCCGCTCCTGCTCCCGCTCCTGCTCCTGCTCCT
GCCTCCACCTCCATCCCTCCTCCCAACCCGATGGTCGAACAACTGAAAGA
GATGGGCTTCCCCGAGTCTCAAGTGGTGGCAGCTCTTCGCGCGGCCAACC
AAGACCTCAATGTCGCAATCGAGTTCCTCTTCAGCGGCAACATCCCAGCC
TCCCCCTCTTCCTCGTCCTCCCTCCCTTCCTCGGCCTCGGCGGGCTTGGA
CTTGATGCCAGCGGTGGGAGAGGGAGGGAGGGGAGGAGGAGAGGAGGGCG
AGGAAAGCATGAGGGGCCAAGCCGACCATATGACAGTGGCGCAATTTTTG
AGCCACCCTGAGATGGAGAATGTCAACGAGTTGAAGGCCGCAGTAGAAGC
GGCACCACCAGCAGGAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCC
ACCAGGATGGTGCTGATCAAATTCAAGACCCTCCAGGGTAAAGATTTCTC
CTTGGATGGCGTCCAACTCACACAGACGATCCGACGCATCGTCCGCGAGA
ACCCGAGTAGTATGGAAAGTGCCATTGGCGCCCTCGCTGTCAGCCATCCA
GACTTTGTGCGCTTGATTAACGAAGATCCGACAAGCTTTTGGGCCGCACT
GGAGGGCGGAGGCGAGGAGGGCGAGTTCGAGGAAGAGGAGGACGAGGACG
TGGAAGGAGAGGGAGGGGAGGGGGGAGGGGTGGGGATACTAGGAGAGTTG
ACGGAGCAAGATGAGCAGGCAGTGGTGCGCTTAATGGAGATGGGGTTTGG
GAGGGAGCAGGTTGTGGAGGCGTATTTATTGGCGGGGAAGGATGAAAATG
GGGCAGTTAATTTGCTGTTGGGTGGGTGAGTAAAGAATTGGTAGAAGGCA
CAAACACCCTTTCCTCTTACCACGTTTGCGAGAACGACCTTATCATCGTC
ATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCATCCCTCCCTCCACCTC
TTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCCGCTCCTGCTCCCGCTC
CTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCCTCCCAACCCGATGGTC
GAACAACTGAAAGAGATGGGCTTCCCCGAGTCTCAAGTGGTGGCAGCTCT
TCGCGCGGCCAACCAAGACCTCAATGTCGCAATCGAGTTCCTCTTCAGCG
GCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTCCCTCCCTTCCTCGGCC
TCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAGAGGGAGGGAGGGGAGG
AGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAAGCCGACCATATGACAG
TGGCGCAATTTTTGAGCCACCCTGAGATGGAGAATGTCAACGAGTTGAAG
GCCGCAGTAGAAGCGGCACCACCAGCAGGAGAAACCTTTCCCGCCGACAG
GCTTAAGCTCATCCACCAGGATGGTGCTGATCAAATTCAAGACCCTCCAG
GGTAAAGATTTCTCCTTGGATGGCGTCCAACTCACACAGACGATCCGACG
CATCGTCCGCGAGAACCCGAGTAGTATGGAAAGTGCCATTGGCGCCCTCG
CTGTCAGCCATCCAGACTTTGTGCGCTTGATTAACGAAGATCCGACAAGC
TTTTGGGCCGCACTGGAGGGCGGAGGCGAGGAGGGCGAGTTCGAGGAAGA
GGAGGACGAGGACGTGGAAGGAGAGGGAGGGGAGGGGGGAGGGGTGGGGA
TACTAGGAGAGTTGACGGAGCAAGATGAGCAGGCAGTGGTGCGCTTAATG
GAGATGGGGTTTGGGAGGGAGCAGGTTGTGGAGGCGTATTTATTGGCGGG
GAAGGATGAAAATGGGGCAGTTAATTTGCTGTTGGGTGGGTGAGTAAAGA
ATTGGTAGAAGGCACAAACACCCTTTCCTCTTACCACGTTTGCGAGAACG
ACCTTATCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCATC
CCTCCCTCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCCGC
TCCTGCTCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCCTC
CCAACCCGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCGAGTCTCAA
GTGGTGGCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTCGCAATCGA
GTTCCTCTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTCCC
TCCCTTCCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAGAG
GGAGGGAGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAAGC
CGACCATATGACAGTGGCGCAATTTTTGAGCCACCCTGAGATGGAGAATG
TCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACCACCAGCAGGAGAAACC
TTTCCCGCCGACAGGCTTAAGCTCATCCACCAGGATGGTGCTGATCAAAT
TCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGCGTCCAACTCACA
CAGACG back to top
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