jgi.p|Nanoce1779_2|646558, mRNA_4547 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|646558
Unique Name	mRNA_4547
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1653
Alignment location	scaffold_10:900856..902508 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	646644
Track	FilteredModels2
ProteinId	646558

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:900856..902508 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|646558	gene_4547	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4547	CDS_4547	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|646558	mRNA_4547-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:900856..902508-
coding sequence from alignment at scaffold_10:900856..902508-

mRNA sequence

>mRNA_4547 ID=mRNA_4547|Name=jgi.p|Nanoce1779_2|646558|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp
TAGACATCCCTCTCATAAATTTCAGTTGACAGACCATTTCCCCCACCTAG
AACAACCATGGCTCGCCGCGTGCTTCTTTATGCCCCTCTCCTTGTCTACA
CCCTCCTACTCCTTTTCCTCCTTCTCTCTGTGACATTTGGGGTTCCTATA
GACCCCAATGCCACATCCATGCCCGGTGAAGAGGTGCCCTGTAAGTCATC
AATGGATGTTGTGAATGGGACGGCACGCCTGACGCTCTGCATGCAAGGCC
GCAAGGTGTGGAAGGAGCGCCGCAACAACGATCGCACGACGCAAGTGTTT
GCCACAATTTTGAATGCAGGGGACTCACAAGTCTGCGACCTTCACGTCGA
AGTCTCGAACATGGAGAATGCCATTCGTTGGTGGCCCACGTGGTTCAACA
CTACTGTTTATCCTTATTTTACCTTGTTGCCGGGCCAGACGGTCTCGGTG
GGTGCTGTCATCCCGCAAGCCAAGGGTTTCCCGCAAATCAAAATTACTCA
GATGCGGCCATGTGACGGGGAATCCCCACCTTTAGACGAGGAAGATGACA
TCGACATGACCAATGAGGGGGAGGGGCCCCCTCCGAGCGACAGTATAGAC
CTCGCACGAAATGCCACGACTGCGACAATAACAACGACAAAACCAGCGGC
GACGTCGGGATTGACAATAAATCCGACGGTTCTCACGACGCCTACCGATT
CTACTATTCCTGCTAAGCACATATCAGTTGAGGTCAACAAAGCAGAAGGA
GAGCCCACAGGTGCGACTACAGCATCGGCAATGCCTGCGGATCTGGCGAC
GGCAGCCGATTCCACGGCCGTGGCTCCTGCGACGGTTCCGGCTCCCAAGG
CTGACGCTCCAGAAGACGAGGCGGTTGAGGGGGAAGAAGAGAATGAACAA
GAAGAGATCCCTTCCGCCTTGAAGGGCAAGAAGAAGTGCGAAGTTGTGAA
GGGGGTCAACGGCCTCCAAGCGCGTTGGTGCGTTGACCTGTCGCCCAAAG
TGTGGGTAGAGCCGAGGCGGAAGAAGCGATACGTTCGTGTGGCTGGAGAA
GTGACGAATATAATGAGCAATGTTTCTCTGTGCAATATTGAGATTTGGCT
ACAGAGCAACAAGTCAGCCGTATCCACGTGGCCTGAATGGTGGCCGAATA
GCAGCGATGAGCAATTGGATCCTGGCAATTCTTTCATGGTTGGAGCGAAT
GTGTATTTTAAAAGAGGAAAGCCCCAGATCAAATTGCTGTCATTCGATGA
ATGTGTAGATACTGGGGCTTTGCCGGAGGATCCTCCTGCTTCAGTGCCCA
CAGGTGGATATGGCGGGGGGGGCGCGGATTTTGGTGGCGACGTTGGAGGA
GGACCTGCTCCTAGCCCGTGGCAGTCACCTACGCAGAGCCAGGGTCAAGA
GCAGCGGCAAGGGCAGCAGCAAGATGGAGGGCAGCAATGGACTGCGCCTA
CACCTGTACCAAAGCCGACCACGGTCGACCTCGGTGAAGCATACAATAAC
AACAGTAGTAACGACAACAATAACGAAGACCACAGCAACAACGCCAACAA
CAAAAACAACAACAATAATGATTGGAATAATGGAGGTGGTGGTGATGGTG
AAAGAGGAGATGGAGGAGGAAGAGGGGATGGTGGTAGCCAATGGCATGTG
TAG

protein sequence of jgi.p|Nanoce1779_2|646558

>mRNA_4547-protein ID=mRNA_4547-protein|Name=jgi.p|Nanoce1779_2|646558|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MARRVLLYAPLLVYTLLLLFLLLSVTFGVPIDPNATSMPGEEVPCKSSMD
VVNGTARLTLCMQGRKVWKERRNNDRTTQVFATILNAGDSQVCDLHVEVS
NMENAIRWWPTWFNTTVYPYFTLLPGQTVSVGAVIPQAKGFPQIKITQMR
PCDGESPPLDEEDDIDMTNEGEGPPPSDSIDLARNATTATITTTKPAATS
GLTINPTVLTTPTDSTIPAKHISVEVNKAEGEPTGATTASAMPADLATAA
DSTAVAPATVPAPKADAPEDEAVEGEEENEQEEIPSALKGKKKCEVVKGV
NGLQARWCVDLSPKVWVEPRRKKRYVRVAGEVTNIMSNVSLCNIEIWLQS
NKSAVSTWPEWWPNSSDEQLDPGNSFMVGANVYFKRGKPQIKLLSFDECV
DTGALPEDPPASVPTGGYGGGGADFGGDVGGGPAPSPWQSPTQSQGQEQR
QGQQQDGGQQWTAPTPVPKPTTVDLGEAYNNNSSNDNNNEDHSNNANNKN
NNNNDWNNGGGGDGERGDGGGRGDGGSQWHV*

mRNA from alignment at scaffold_10:900856..902508-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4547 ID=mRNA_4547|Name=jgi.p|Nanoce1779_2|646558|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp|location=Sequence derived from alignment at scaffold_10:900856..902508- (Nannochloropsis oceanica)
TAGACATCCCTCTCATAAATTTCAGTTGACAGACCATTTCCCCCACCTAG
AACAACCATGGCTCGCCGCGTGCTTCTTTATGCCCCTCTCCTTGTCTACA
CCCTCCTACTCCTTTTCCTCCTTCTCTCTGTGACATTTGGGGTTCCTATA
GACCCCAATGCCACATCCATGCCCGGTGAAGAGGTGCCCTGTAAGTCATC
AATGGATGTTGTGAATGGGACGGCACGCCTGACGCTCTGCATGCAAGGCC
GCAAGGTGTGGAAGGAGCGCCGCAACAACGATCGCACGACGCAAGTGTTT
GCCACAATTTTGAATGCAGGGGACTCACAAGTCTGCGACCTTCACGTCGA
AGTCTCGAACATGGAGAATGCCATTCGTTGGTGGCCCACGTGGTTCAACA
CTACTGTTTATCCTTATTTTACCTTGTTGCCGGGCCAGACGGTCTCGGTG
GGTGCTGTCATCCCGCAAGCCAAGGGTTTCCCGCAAATCAAAATTACTCA
GATGCGGCCATGTGACGGGGAATCCCCACCTTTAGACGAGGAAGATGACA
TCGACATGACCAATGAGGGGGAGGGGCCCCCTCCGAGCGACAGTATAGAC
CTCGCACGAAATGCCACGACTGCGACAATAACAACGACAAAACCAGCGGC
GACGTCGGGATTGACAATAAATCCGACGGTTCTCACGACGCCTACCGATT
CTACTATTCCTGCTAAGCACATATCAGTTGAGGTCAACAAAGCAGAAGGA
GAGCCCACAGGTGCGACTACAGCATCGGCAATGCCTGCGGATCTGGCGAC
GGCAGCCGATTCCACGGCCGTGGCTCCTGCGACGGTTCCGGCTCCCAAGG
CTGACGCTCCAGAAGACGAGGCGGTTGAGGGGGAAGAAGAGAATGAACAA
GAAGAGATCCCTTCCGCCTTGAAGGGCAAGAAGAAGTGCGAAGTTGTGAA
GGGGGTCAACGGCCTCCAAGCGCGTTGGTGCGTTGACCTGTCGCCCAAAG
TGTGGGTAGAGCCGAGGCGGAAGAAGCGATACGTTCGTGTGGCTGGAGAA
GTGACGAATATAATGAGCAATGTTTCTCTGTGCAATATTGAGATTTGGCT
ACAGAGCAACAAGTCAGCCGTATCCACGTGGCCTGAATGGTGGCCGAATA
GCAGCGATGAGCAATTGGATCCTGGCAATTCTTTCATGGTTGGAGCGAAT
GTGTATTTTAAAAGAGGAAAGCCCCAGATCAAATTGCTGTCATTCGATGA
ATGTGTAGATACTGGGGCTTTGCCGGAGGATCCTCCTGCTTCAGTGCCCA
CAGGTGGATATGGCGGGGGGGGCGCGGATTTTGGTGGCGACGTTGGAGGA
GGACCTGCTCCTAGCCCGTGGCAGTCACCTACGCAGAGCCAGGGTCAAGA
GCAGCGGCAAGGGCAGCAGCAAGATGGAGGGCAGCAATGGACTGCGCCTA
CACCTGTACCAAAGCCGACCACGGTCGACCTCGGTGAAGCATACAATAAC
AACAGTAGTAACGACAACAATAACGAAGACCACAGCAACAACGCCAACAA
CAAAAACAACAACAATAATGATTGGAATAATGGAGGTGGTGGTGATGGTG
AAAGAGGAGATGGAGGAGGAAGAGGGGATGGTGGTAGCCAATGGCATGTG
TAG

Coding sequence (CDS) from alignment at scaffold_10:900856..902508-

>mRNA_4547 ID=mRNA_4547|Name=jgi.p|Nanoce1779_2|646558|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_10:900856..902508- (Nannochloropsis oceanica)
ATGGCTCGCCGCGTGCTTCTTTATGCCCCTCTCCTTGTCTACACCCTCCT
ACTCCTTTTCCTCCTTCTCTCTGTGACATTTGGGGTTCCTATAGACCCCA
ATGCCACATCCATGCCCGGTGAAGAGGTGCCCTGTAAGTCATCAATGGAT
GTTGTGAATGGGACGGCACGCCTGACGCTCTGCATGCAAGGCCGCAAGGT
GTGGAAGGAGCGCCGCAACAACGATCGCACGACGCAAGTGTTTGCCACAA
TTTTGAATGCAGGGGACTCACAAGTCTGCGACCTTCACGTCGAAGTCTCG
AACATGGAGAATGCCATTCGTTGGTGGCCCACGTGGTTCAACACTACTGT
TTATCCTTATTTTACCTTGTTGCCGGGCCAGACGGTCTCGGTGGGTGCTG
TCATCCCGCAAGCCAAGGGTTTCCCGCAAATCAAAATTACTCAGATGCGG
CCATGTGACGGGGAATCCCCACCTTTAGACGAGGAAGATGACATCGACAT
GACCAATGAGGGGGAGGGGCCCCCTCCGAGCGACAGTATAGACCTCGCAC
GAAATGCCACGACTGCGACAATAACAACGACAAAACCAGCGGCGACGTCG
GGATTGACAATAAATCCGACGGTTCTCACGACGCCTACCGATTCTACTAT
TCCTGCTAAGCACATATCAGTTGAGGTCAACAAAGCAGAAGGAGAGCCCA
CAGGTGCGACTACAGCATCGGCAATGCCTGCGGATCTGGCGACGGCAGCC
GATTCCACGGCCGTGGCTCCTGCGACGGTTCCGGCTCCCAAGGCTGACGC
TCCAGAAGACGAGGCGGTTGAGGGGGAAGAAGAGAATGAACAAGAAGAGA
TCCCTTCCGCCTTGAAGGGCAAGAAGAAGTGCGAAGTTGTGAAGGGGGTC
AACGGCCTCCAAGCGCGTTGGTGCGTTGACCTGTCGCCCAAAGTGTGGGT
AGAGCCGAGGCGGAAGAAGCGATACGTTCGTGTGGCTGGAGAAGTGACGA
ATATAATGAGCAATGTTTCTCTGTGCAATATTGAGATTTGGCTACAGAGC
AACAAGTCAGCCGTATCCACGTGGCCTGAATGGTGGCCGAATAGCAGCGA
TGAGCAATTGGATCCTGGCAATTCTTTCATGGTTGGAGCGAATGTGTATT
TTAAAAGAGGAAAGCCCCAGATCAAATTGCTGTCATTCGATGAATGTGTA
GATACTGGGGCTTTGCCGGAGGATCCTCCTGCTTCAGTGCCCACAGGTGG
ATATGGCGGGGGGGGCGCGGATTTTGGTGGCGACGTTGGAGGAGGACCTG
CTCCTAGCCCGTGGCAGTCACCTACGCAGAGCCAGGGTCAAGAGCAGCGG
CAAGGGCAGCAGCAAGATGGAGGGCAGCAATGGACTGCGCCTACACCTGT
ACCAAAGCCGACCACGGTCGACCTCGGTGAAGCATACAATAACAACAGTA
GTAACGACAACAATAACGAAGACCACAGCAACAACGCCAACAACAAAAAC
AACAACAATAATGATTGGAATAATGGAGGTGGTGGTGATGGTGAAAGAGG
AGATGGAGGAGGAAGAGGGGATGGTGGTAGCCAATGGCATGTGTAG

Synonyms

Publications