jgi.p|Nanoce1779_2|26948, mRNA_4544 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|26948
Unique Name	mRNA_4544
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	960
Alignment location	scaffold_10:887777..888736 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	27034
Track	FilteredModels2
ProteinId	26948

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:887777..888736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26948	gene_4544	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26948	mRNA_4544-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4544	CDS_4544	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:887777..888736+
coding sequence from alignment at scaffold_10:887777..888736+

mRNA sequence

>mRNA_4544 ID=mRNA_4544|Name=jgi.p|Nanoce1779_2|26948|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
GGGACAGATGAAGCCAGTGCAAAGAAGGGGAGGGTGGCAGGGAGGAAGGG
GGGGAGAAATGGAGGTGCTGACAGAGGAGGTGGAGGAGGTGCATGGTGTT
CAAAATGGAGTTGAAGAGATCGTTTCCCTCTTTCCCTCCTCGCTGCCCTC
CCTCCCTCCCTCCCCCTCGTCCTGCCTGTGCAGCCATGCGGGCGTCCAGG
GGCGAGCTGCCGACAGAAAGCACCTGCGCTGCTGCCTCCCCTTCCCTCCT
CCCTCCCTCAACACCGACCTCTCCCCCTTTGCTCGCCCTCCTCATCCCTC
CTCCTCCTCCTCCTCCTCCCCGCCTTACACCTCCACTATCCCTCCCTCCC
TTCGTCGTCCTCCCTCTCGTCGTCATCTTCGTTATCACCGCTGACCCCCC
TCTCTCCCGACCTCCCTCCCTCCCGACCTCCACTTCCAGCTCCACTACCT
TATCCCACTCTGTTGCCGAAATCGCCCGCTCCCTGTATGAAGAAGAGGAC
TGTCCCTTCCCCCCCCCCCCTCCCTCCCTCCCTCCCCTCCCGCGCCCACC
ACAGCGCCTGAAGGAATTCGACCACCGTCGTCATAACAGGCAAGGAGGTC
AAATCAATGCTCGCCCCTCCTTCCGTCCCTGCTTCCTTCCCTCCCTCCTT
CCCTCCCTCCCCGGGAAGGGACGCACGGAGACTGCTGACACAGATGGAGG
AGGGAGGGAAGGAGGACGAGGAGGGAAGGAACGACGACGCTAAGCTGCTG
CTGCTGCTGATGATGAGAGAGGTATTTGTCGTGCTGCTGCTGCGGCTGCG
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCATCGAGCATCG
CTGCCAACACTGCCATTTCTGTCTTTGCCCGCCGCAGACAAACCCCACCC
TCCTTCTCCACCTCCCCCTCCTTTGGCGTCTCATCTACTGTATATGCCTC
AACAGGTCCG

protein sequence of jgi.p|Nanoce1779_2|26948

>mRNA_4544-protein ID=mRNA_4544-protein|Name=jgi.p|Nanoce1779_2|26948|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MVFKMELKRSFPSFPPRCPPSLPPPRPACAAMRASRGELPTESTCAAASP
SLLPPSTPTSPPLLALLIPPPPPPPPRLTPPLSLPPFVVLPLVVIFVITA
DPPLSRPPSLPTSTSSSTTLSHSVAEIARSLYEEEDCPFPPPPPSLPPLP
RPPQRLKEFDHRRHNRQGGQINARPSFRPCFLPSLLPSLPGKGRTETADT
DGGGREGGRGGKERRR*

mRNA from alignment at scaffold_10:887777..888736+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4544 ID=mRNA_4544|Name=jgi.p|Nanoce1779_2|26948|organism=Nannochloropsis oceanica|type=mRNA|length=960bp|location=Sequence derived from alignment at scaffold_10:887777..888736+ (Nannochloropsis oceanica)
GGGACAGATGAAGCCAGTGCAAAGAAGGGGAGGGTGGCAGGGAGGAAGGG
GGGGAGAAATGGAGGTGCTGACAGAGGAGGTGGAGGAGGTGCATGGTGTT
CAAAATGGAGTTGAAGAGATCGTTTCCCTCTTTCCCTCCTCGCTGCCCTC
CCTCCCTCCCTCCCCCTCGTCCTGCCTGTGCAGCCATGCGGGCGTCCAGG
GGCGAGCTGCCGACAGAAAGCACCTGCGCTGCTGCCTCCCCTTCCCTCCT
CCCTCCCTCAACACCGACCTCTCCCCCTTTGCTCGCCCTCCTCATCCCTC
CTCCTCCTCCTCCTCCTCCCCGCCTTACACCTCCACTATCCCTCCCTCCC
TTCGTCGTCCTCCCTCTCGTCGTCATCTTCGTTATCACCGCTGACCCCCC
TCTCTCCCGACCTCCCTCCCTCCCGACCTCCACTTCCAGCTCCACTACCT
TATCCCACTCTGTTGCCGAAATCGCCCGCTCCCTGTATGAAGAAGAGGAC
TGTCCCTTCCCCCCCCCCCCTCCCTCCCTCCCTCCCCTCCCGCGCCCACC
ACAGCGCCTGAAGGAATTCGACCACCGTCGTCATAACAGGCAAGGAGGTC
AAATCAATGCTCGCCCCTCCTTCCGTCCCTGCTTCCTTCCCTCCCTCCTT
CCCTCCCTCCCCGGGAAGGGACGCACGGAGACTGCTGACACAGATGGAGG
AGGGAGGGAAGGAGGACGAGGAGGGAAGGAACGACGACGCTAAGCTGCTG
CTGCTGCTGATGATGAGAGAGGTATTTGTCGTGCTGCTGCTGCGGCTGCG
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCATCGAGCATCG
CTGCCAACACTGCCATTTCTGTCTTTGCCCGCCGCAGACAAACCCCACCC
TCCTTCTCCACCTCCCCCTCCTTTGGCGTCTCATCTACTGTATATGCCTC
AACAGGTCCG

Coding sequence (CDS) from alignment at scaffold_10:887777..888736+

>mRNA_4544 ID=mRNA_4544|Name=jgi.p|Nanoce1779_2|26948|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_10:887777..888736+ (Nannochloropsis oceanica)
ATGGTGTTCAAAATGGAGTTGAAGAGATCGTTTCCCTCTTTCCCTCCTCG
CTGCCCTCCCTCCCTCCCTCCCCCTCGTCCTGCCTGTGCAGCCATGCGGG
CGTCCAGGGGCGAGCTGCCGACAGAAAGCACCTGCGCTGCTGCCTCCCCT
TCCCTCCTCCCTCCCTCAACACCGACCTCTCCCCCTTTGCTCGCCCTCCT
CATCCCTCCTCCTCCTCCTCCTCCTCCCCGCCTTACACCTCCACTATCCC
TCCCTCCCTTCGTCGTCCTCCCTCTCGTCGTCATCTTCGTTATCACCGCT
GACCCCCCTCTCTCCCGACCTCCCTCCCTCCCGACCTCCACTTCCAGCTC
CACTACCTTATCCCACTCTGTTGCCGAAATCGCCCGCTCCCTGTATGAAG
AAGAGGACTGTCCCTTCCCCCCCCCCCCTCCCTCCCTCCCTCCCCTCCCG
CGCCCACCACAGCGCCTGAAGGAATTCGACCACCGTCGTCATAACAGGCA
AGGAGGTCAAATCAATGCTCGCCCCTCCTTCCGTCCCTGCTTCCTTCCCT
CCCTCCTTCCCTCCCTCCCCGGGAAGGGACGCACGGAGACTGCTGACACA
GATGGAGGAGGGAGGGAAGGAGGACGAGGAGGGAAGGAACGACGACGCTA
A

Synonyms

Publications