Properties
| Property Name | Value |
|---|
| TranscriptId | 630479 |
| Track | FilteredModels2 |
| ProteinId | 630393 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:883572..886832 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4543 ID=mRNA_4543|Name=jgi.p|Nanoce1779_2|630393|organism=Nannochloropsis oceanica|type=mRNA|length=3033bp
GGCGGAGGGGGGGGGGGGTAGGGGGTAGGGAGGGAGGACGGAAGAGGGGG
CAGGGAGGAGATAGAAAGAAGCGAAGGAAGAGGGAAAAGGAGACGGGAGA
TTTCTCATGGAAGGAAGAGGGGAAGGAGCAAGGACAGGGAGGGAGGAAGG
AGGGAAAAGAGGAGGAAGAGAAGGAGGGGGAGGAGCCACTCTACATTCCT
GTGGGTGTAGGGGGTCTGTTCCCTCGTGTCCTTCCTCCCTCTCCCCCTTC
CCATCCCCTCCCCCCTCTTCCATCGAAGCAGGCACAACGGAATAGCAATA
GATCCAAGAATTGCAAAGCCCCCGCCCCCACTTCCTCCTTCCTGTCCTCC
TCTTTCTCCACCACCATCATCCTCTCCACCTTCCGTTTCCTCGGCCGGCT
GATTGGGAAAGCCTTCCAAGAGAACCGGCTGCTCTCCCTCCCCCTCTCCC
TCCCTCTCTGTAAGCTCTTGGTGGGGCATCCATTAATTCTGGCAGATGTC
GGGCTTGTGGACCCCCAACTCGGTCGCTGCTTGGCCGAGATCGAGTCCAT
GGTGCAGCAGCAGCAGCACCGTCACCGCCTTTCCGAGTACCTTGAGGCCC
TCTCCCTCGACTTCACCCTTCCAGGCTACCCATGGTATGAGCTGCGGGAG
GGAGGGAAGGAGGAGACGGTCGACAGCACGAACGTACGGGTGTACCTCAA
TCTGGTCACGCGGCATTTCCTAATTGAGAGCATTCAGCCCTCCCTCAAGG
CACTGAAAGAGGGATTGCTTGACGTCCTCCGCCCCCCCCTTACCCGGTCT
CTCGCCCTCTTCTCCCCCATAGAGCTTCGCGCCCTGCTGTGTGCGGAGGG
GGGGGAGGAGGAAGAGGAGGAGTGGACCGAGGAGCGGATCGGGAATAGCC
TGGTGTGTAAGCACGGGTATCACCGATCAGCCCCTCAGATACAGTGGCTG
GTCAGGGTGTTGGCATCGTTGGAGAGGGAAGAGAGGAAGAAGTTTTTGAT
GTTTGTGTGTGGCACACCCCGTTTGCCTATTGGTGGCTTTGCGGCCTTGA
GGCCGTTACTGACGGTGGTGAGAAAAGAGGTCCCCTCGACGGGTGGGAGG
GGGGAAAAGAGGGAGGGGGGGGCGTTGGCAGCAGACTTGTACTTACCGAG
CTGTAGCACGTGTCAGGTGTACTTAAAGCTGCCTGCATACAGCTCCGAGG
AGGTGCTGCGGGAGAAGTTGAAGCAGGCGATGACGTTGGGACAGGAGCAC
TTTGCCTTAGATTAGATAGTCGTTTCCTCCCTTCCTGCTCCCCTCCTTTT
CTTCCTTGTCCATGTGACGGTGCCCGTTCCCTTATTCCCGGGAAACGGAC
GAAGAAGAGAGAGAGGGACAGAAGGAAGGGGGATTGTTGATGGTGGACGA
GAGAGGGACGATTGAGAACCAGTGCCAGCAAGTGGACTGAAATACGATAA
GGCATACTAGAAATAGAAAGGGAGAGACAAGCAAGTAAGTGGGCATATAG
GGAATTAAAATGAGGCTAGGCTAGATACAAGGGAAACACAGAATGAAAGT
GATTGCCAGCTGATTATCTCAGCAGCAGCCGCTGCTGCTGCGGCTGCAGG
AGGAGGATTTGAATGAAAGAACATGGAAAGCATGTGCCATTGTACATGTA
ATATACATACAAAGGGGTTACATGAGTATGCGCGCGGCAGGGGATAGTGT
GAAGAAATAGATAGGAAGATGAAAATAATAGAAGGACAAAGGCGAGGATT
GATCAAGACTTGTGGCAAAACACGTCCAAAATGTCACGATATGAAGCCGG
ACAAAATATGGTAAAAAAAGAAATAGCAGCCATAAACATACATGCGAAAT
ACTTTCGTACTTGTATTTTTTGGCGTACCTTCCTTTTTACTTAGACATGC
TGGTGACCTGTGGAACTGAGAAAAACAGGGGGGTTGAGGAGGTTATAGTA
AAAATGCGAGCCAGACTCTGCAAATATCACGACAGCATCAAGACCACCTT
AGCTCTTAAATCTTCTTCTGATTGTCCTGGTTTGGTCACCGCCTTCGCTG
ACATTATCTGTGCACACTTGGTGAGGGACGGGGCTTTTTAATAAGGGAGC
ATAACGAAAACTGATAAAGCCGAATCGCCGATCAACGCCTCGCTTTCTCC
ATCTTCGTCTCATCAGATGGACACTTTGTGAAGGCATGCACATGCCAGAT
ACAGCGATGTGACACCATATCTAGCCCCAGAAACCCTTGGTCGAGTCTAT
TTCTCTTTACGGATAAACAAATTTCGTTTTCTCAGGCTCTCACAACGACA
ACCCCACAGAACATCAGATGCCACGCTCGAGACCCTACTTCTACGGCTTC
TACTCCTATCCATCCTGCGTCCAGCACCATGGAATTTCTCTCCCAGCTCC
TGGCCCCAAGACTGCCCAAAATCGCCAGCAATAAAGAGGACATCTCGCAG
CGATCGCCAGCACGTAGGACCACCGCCAGCAGGAGCGACACTAGCCCCAA
CCAAGATGACAACGGAGTTGACGAGTCCACGCCACCGACGGTCGAATATG
GGTTCAGCGCCGATTCAAAGGGGCAGCGCTTACAAGCACTGTGGAAACCT
TTTGAAGAGGCGTTTTCCGACATGGCCTTGTCTGTAGAAGATAAGCTGAC
AGTGGTTGTGCCATTTGCCGATGCTTTCGTAGCGGTATATGATGAGCAGC
TACCGCACATGTGGCTTGCCCCGAAAACCAGTCAACGTAAAAATAAAGGG
GGTGGAGAGGAGGATGAAAATGTGCAGCAACCGCAGATTAGGACCGCGCC
TATCGGGGGGCAGCGACGAGGCGCAGAAGTGGACGACGAGGGAGGAGACG
TCGCGGACAAACCCAACCTCCCGGCTGCTACTGACTTAATCATTCCACCT
TCCGTGCACGACGTGAAGGGCCACCCGAAGCTCCTGACTGTCCTGGTTGG
GACATTCCTAATCGACATTCTAATACGACCCCAAAGCAGAGAGACTACAG
CAGCAGCAGCAGCAGCAGCGACAGCAGCAGCAG back to topprotein sequence of jgi.p|Nanoce1779_2|630393 >mRNA_4543-protein ID=mRNA_4543-protein|Name=jgi.p|Nanoce1779_2|630393|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MVQQQQHRHRLSEYLEALSLDFTLPGYPWYELREGGKEETVDSTNVRVYL
NLVTRHFLIESIQPSLKALKEGLLDVLRPPLTRSLALFSPIELRALLCAE
GGEEEEEEWTEERIGNSLVCKHGYHRSAPQIQWLVRVLASLEREERKKFL
MFVCGTPRLPIGGFAALRPLLTVVRKEVPSTGGRGEKREGGALAADLYLP
SCSTCQVYLKLPAYSSEEVLREKLKQAMTLGQEHFALD* back to topmRNA from alignment at scaffold_10:883572..886832- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4543 ID=mRNA_4543|Name=jgi.p|Nanoce1779_2|630393|organism=Nannochloropsis oceanica|type=mRNA|length=3261bp|location=Sequence derived from alignment at scaffold_10:883572..886832- (Nannochloropsis oceanica)
GGCGGAGGGGGGGGGGGGTAGGGGGTAGGGAGGGAGGACGGAAGAGGGGG
CAGGGAGGAGATAGAAAGAAGCGAAGGAAGAGGGAAAAGGAGACGGGAGA
TTTCTCATGGAAGGAAGAGGGGAAGGAGCAAGGACAGGGAGGGAGGAAGG
AGGGAAAAGAGGAGGAAGAGAAGGAGGGGGAGGAGCCACTCTACATTCCT
GTGGGTGTAGGGGGTCTGTTCCCTCGTGTCCTTCCTCCCTCTCCCCCTTC
CCATCCCCTCCCCCCTCTTCCATCGAAGCAGGCACAACGGAATAGCAATA
GATCCAAGAATTGCAAAGCCCCCGCCCCCACTTCCTCCTTCCTGTCCTCC
TCTTTCTCCACCACCATCATCCTCTCCACCTTCCGTTTCCTCGGCCGGCT
GATTGGGAAAGCCTTCCAAGAGAACCGGCTGCTCTCCCTCCCCCTCTCCC
TCCCTCTCTGTAAGCTCTTGGTGGGGCATCCATTAATTCTGGCAGATGTC
GGGCTTGTGGACCCCCAACTCGGTCGCTGCTTGGCCGAGATCGAGTCCAT
GGTGGTACGTGCGGATGCGGAGGAGGAGGCGGAGGAGGAGAATGAGAAGG
AGAAGATGGAGGAGGAATGGAAAGATGAAGGGCTGCTGCTGAGCACGCCT
ACTGGCTCTACGTCCTCCTCTTTCTCGTCTGTTCGTTCTATCATCACCAC
CACCACCGCCACCACCAAGAAAAAGAAGCAACCACACCTTCAGGAGCAAC
AGCAGCCGCAACCCCCACATCAACCCCGACAGCAGCAGCAGCAGCACCGT
CACCGCCTTTCCGAGTACCTTGAGGCCCTCTCCCTCGACTTCACCCTTCC
AGGCTACCCATGGTATGAGCTGCGGGAGGGAGGGAAGGAGGAGACGGTCG
ACAGCACGAACGTACGGGTGTACCTCAATCTGGTCACGCGGCATTTCCTA
ATTGAGAGCATTCAGCCCTCCCTCAAGGCACTGAAAGAGGGATTGCTTGA
CGTCCTCCGCCCCCCCCTTACCCGGTCTCTCGCCCTCTTCTCCCCCATAG
AGCTTCGCGCCCTGCTGTGTGCGGAGGGGGGGGAGGAGGAAGAGGAGGAG
TGGACCGAGGAGCGGATCGGGAATAGCCTGGTGTGTAAGCACGGGTATCA
CCGATCAGCCCCTCAGATACAGTGGCTGGTCAGGGTGTTGGCATCGTTGG
AGAGGGAAGAGAGGAAGAAGTTTTTGATGTTTGTGTGTGGCACACCCCGT
TTGCCTATTGGTGGCTTTGCGGCCTTGAGGCCGTTACTGACGGTGGTGAG
AAAAGAGGTCCCCTCGACGGGTGGGAGGGGGGAAAAGAGGGAGGGGGGGG
CGTTGGCAGCAGACTTGTACTTACCGAGCTGTAGCACGTGTCAGGTGTAC
TTAAAGCTGCCTGCATACAGCTCCGAGGAGGTGCTGCGGGAGAAGTTGAA
GCAGGCGATGACGTTGGGACAGGAGCACTTTGCCTTAGATTAGATAGTCG
TTTCCTCCCTTCCTGCTCCCCTCCTTTTCTTCCTTGTCCATGTGACGGTG
CCCGTTCCCTTATTCCCGGGAAACGGACGAAGAAGAGAGAGAGGGACAGA
AGGAAGGGGGATTGTTGATGGTGGACGAGAGAGGGACGATTGAGAACCAG
TGCCAGCAAGTGGACTGAAATACGATAAGGCATACTAGAAATAGAAAGGG
AGAGACAAGCAAGTAAGTGGGCATATAGGGAATTAAAATGAGGCTAGGCT
AGATACAAGGGAAACACAGAATGAAAGTGATTGCCAGCTGATTATCTCAG
CAGCAGCCGCTGCTGCTGCGGCTGCAGGAGGAGGATTTGAATGAAAGAAC
ATGGAAAGCATGTGCCATTGTACATGTAATATACATACAAAGGGGTTACA
TGAGTATGCGCGCGGCAGGGGATAGTGTGAAGAAATAGATAGGAAGATGA
AAATAATAGAAGGACAAAGGCGAGGATTGATCAAGACTTGTGGCAAAACA
CGTCCAAAATGTCACGATATGAAGCCGGACAAAATATGGTAAAAAAAGAA
ATAGCAGCCATAAACATACATGCGAAATACTTTCGTACTTGTATTTTTTG
GCGTACCTTCCTTTTTACTTAGACATGCTGGTGACCTGTGGAACTGAGAA
AAACAGGGGGGTTGAGGAGGTTATAGTAAAAATGCGAGCCAGACTCTGCA
AATATCACGACAGCATCAAGACCACCTTAGCTCTTAAATCTTCTTCTGAT
TGTCCTGGTTTGGTCACCGCCTTCGCTGACATTATCTGTGCACACTTGGT
GAGGGACGGGGCTTTTTAATAAGGGAGCATAACGAAAACTGATAAAGCCG
AATCGCCGATCAACGCCTCGCTTTCTCCATCTTCGTCTCATCAGATGGAC
ACTTTGTGAAGGCATGCACATGCCAGATACAGCGATGTGACACCATATCT
AGCCCCAGAAACCCTTGGTCGAGTCTATTTCTCTTTACGGATAAACAAAT
TTCGTTTTCTCAGGCTCTCACAACGACAACCCCACAGAACATCAGATGCC
ACGCTCGAGACCCTACTTCTACGGCTTCTACTCCTATCCATCCTGCGTCC
AGCACCATGGAATTTCTCTCCCAGCTCCTGGCCCCAAGACTGCCCAAAAT
CGCCAGCAATAAAGAGGACATCTCGCAGCGATCGCCAGCACGTAGGACCA
CCGCCAGCAGGAGCGACACTAGCCCCAACCAAGATGACAACGGAGTTGAC
GAGTCCACGCCACCGACGGTCGAATATGGGTTCAGCGCCGATTCAAAGGG
GCAGCGCTTACAAGCACTGTGGAAACCTTTTGAAGAGGCGTTTTCCGACA
TGGCCTTGTCTGTAGAAGATAAGCTGACAGTGGTTGTGCCATTTGCCGAT
GCTTTCGTAGCGGTATATGATGAGCAGCTACCGCACATGTGGCTTGCCCC
GAAAACCAGTCAACGTAAAAATAAAGGGGGTGGAGAGGAGGATGAAAATG
TGCAGCAACCGCAGATTAGGACCGCGCCTATCGGGGGGCAGCGACGAGGC
GCAGAAGTGGACGACGAGGGAGGAGACGTCGCGGACAAACCCAACCTCCC
GGCTGCTACTGACTTAATCATTCCACCTTCCGTGCACGACGTGAAGGGCC
ACCCGAAGCTCCTGACTGTCCTGGTTGGGACATTCCTAATCGACATTCTA
ATACGACCCCAAAGCAGAGAGACTACAGCAGCAGCAGCAGCAGCAGCGAC
AGCAGCAGCAG back to topCoding sequence (CDS) from alignment at scaffold_10:883572..886832- >mRNA_4543 ID=mRNA_4543|Name=jgi.p|Nanoce1779_2|630393|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_10:883572..886832- (Nannochloropsis oceanica)
CAGCAGCAGCAGCACCGTCACCGCCTTTCCGAGTACCTTGAGGCCCTCTC
CCTCGACTTCACCCTTCCAGGCTACCCATGGTATGAGCTGCGGGAGGGAG
GGAAGGAGGAGACGGTCGACAGCACGAACGTACGGGTGTACCTCAATCTG
GTCACGCGGCATTTCCTAATTGAGAGCATTCAGCCCTCCCTCAAGGCACT
GAAAGAGGGATTGCTTGACGTCCTCCGCCCCCCCCTTACCCGGTCTCTCG
CCCTCTTCTCCCCCATAGAGCTTCGCGCCCTGCTGTGTGCGGAGGGGGGG
GAGGAGGAAGAGGAGGAGTGGACCGAGGAGCGGATCGGGAATAGCCTGGT
GTGTAAGCACGGGTATCACCGATCAGCCCCTCAGATACAGTGGCTGGTCA
GGGTGTTGGCATCGTTGGAGAGGGAAGAGAGGAAGAAGTTTTTGATGTTT
GTGTGTGGCACACCCCGTTTGCCTATTGGTGGCTTTGCGGCCTTGAGGCC
GTTACTGACGGTGGTGAGAAAAGAGGTCCCCTCGACGGGTGGGAGGGGGG
AAAAGAGGGAGGGGGGGGCGTTGGCAGCAGACTTGTACTTACCGAGCTGT
AGCACGTGTCAGGTGTACTTAAAGCTGCCTGCATACAGCTCCGAGGAGGT
GCTGCGGGAGAAGTTGAAGCAGGCGATGACGTTGGGACAGGAGCACTTTG
CCTTAGATTAGATGGTGCAGCAGCAGCAGCACCGTCACCGCCTTTCCGAG
TACCTTGAGGCCCTCTCCCTCGACTTCACCCTTCCAGGCTACCCATGGTA
TGAGCTGCGGGAGGGAGGGAAGGAGGAGACGGTCGACAGCACGAACGTAC
GGGTGTACCTCAATCTGGTCACGCGGCATTTCCTAATTGAGAGCATTCAG
CCCTCCCTCAAGGCACTGAAAGAGGGATTGCTTGACGTCCTCCGCCCCCC
CCTTACCCGGTCTCTCGCCCTCTTCTCCCCCATAGAGCTTCGCGCCCTGC
TGTGTGCGGAGGGGGGGGAGGAGGAAGAGGAGGAGTGGACCGAGGAGCGG
ATCGGGAATAGCCTGGTGTGTAAGCACGGGTATCACCGATCAGCCCCTCA
GATACAGTGGCTGGTCAGGGTGTTGGCATCGTTGGAGAGGGAAGAGAGGA
AGAAGTTTTTGATGTTTGTGTGTGGCACACCCCGTTTGCCTATTGGTGGC
TTTGCGGCCTTGAGGCCGTTACTGACGGTGGTGAGAAAAGAGGTCCCCTC
GACGGGTGGGAGGGGGGAAAAGAGGGAGGGGGGGGCGTTGGCAGCAGACT
TGTACTTACCGAGCTGTAGCACGTGTCAGGTGTACTTAAAGCTGCCTGCA
TACAGCTCCGAGGAGGTGCTGCGGGAGAAGTTGAAGCAGGCGATGACGTT
GGGACAGGAGCACTTTGCCTTAGATTAGATGGTG back to top
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