jgi.p|Nanoce1779_2|565953, mRNA_4541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565953
Unique NamemRNA_4541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length333
Alignment locationscaffold_10:880828..881478 +

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Properties
Property NameValue
TranscriptId566039
TrackFilteredModels2
ProteinId565953
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:880828..881478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565953gene_4541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565953mRNA_4541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4541CDS_4541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4541 ID=mRNA_4541|Name=jgi.p|Nanoce1779_2|565953|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGAAGAATCTCAAGAGCCATGTCTTGGACATTAGCCCAAGCCAGGAGGA
GGGAGGGAGGGAGGGTGGGGGAGAGGAAGAGGTAATGGTGGTTTCCTTGG
AGGTGGACGAGGGTGTTCTCGAGGGGGGTGGGAATGGAGGAGGAGGAAGG
GAGGGAGGGAAGGCCGATGGAGGCGAGGAGGAGGGGCCAGAGGTGGAGAT
GTCGGCAGGCGGCGATGGTCCCAAGAGGGGAGCGGCAGAGGCAGCGGCAG
AGGAAGAGAAGGGCTTGTTGCTGGAAGACGGGAGCCCTATCCAGCTCACG
CCCAACTCCTGCGTTAAGATTGTCGTTCTGTAA
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protein sequence of jgi.p|Nanoce1779_2|565953

>mRNA_4541-protein ID=mRNA_4541-protein|Name=jgi.p|Nanoce1779_2|565953|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MKNLKSHVLDISPSQEEGGREGGGEEEVMVVSLEVDEGVLEGGGNGGGGR
EGGKADGGEEEGPEVEMSAGGDGPKRGAAEAAAEEEKGLLLEDGSPIQLT
PNSCVKIVVL*
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mRNA from alignment at scaffold_10:880828..881478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4541 ID=mRNA_4541|Name=jgi.p|Nanoce1779_2|565953|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at scaffold_10:880828..881478+ (Nannochloropsis oceanica)
ATGAAGAATCTCAAGAGCCATGTCTTGGACATTAGCCCAAGCCAGGAGGA
GGGAGGGAGGGAGGGTGGGGGAGAGGAAGAGGTAATGGTGGTTTCCTTGG
AGGTGGACGAGGGTGTTCTCGAGGGGGGTGGGAATGGAGGAGGAGGAAGG
GAGGGAGGGAAGGCCGATGGAGGCGAGGAGGAGGGGCCAGAGGTGGAGAT
GTCGGCAGGCGGCGATGGTCCCAAGAGGGGAGCGGCAGAGGCAGCGGCAG
AGGAAGAGAAGGGCTTGTTGCTGGAAGACGGGAGGTGAGAAAGAGGCAGG
GAAATAGGGAGGGGTGGCGGTGGATGGCTTTAGAAGCAGGAGGAGGGTGG
AATGGATGACTTGGAAGGAGGCGGTGAGGAAGGATGAAGCACTTCCCCCA
CTCCCTGATGATGATGAAGACGATGATGACGATGATGACGATGATGATGA
TGATGATGGTACAGGGATCCATAATCCTGCGCTACTGGAGCCCGTAGGCT
CCAACCGGCACAACGTCAGCAGGTGCGAAAACACCCTAGCAAACATCCCC
TCCCGTGAGAGCCCTCCCTCCCTCCCTCCCTCCTCCTCCTCCTCCCGTAC
AGCCCTATCCAGCTCACGCCCAACTCCTGCGTTAAGATTGTCGTTCTGTA
A
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Coding sequence (CDS) from alignment at scaffold_10:880828..881478+

>mRNA_4541 ID=mRNA_4541|Name=jgi.p|Nanoce1779_2|565953|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_10:880828..881478+ (Nannochloropsis oceanica)
ATGAAGAATCTCAAGAGCCATGTCTTGGACATTAGCCCAAGCCAGGAGGA
GGGAGGGAGGGAGGGTGGGGGAGAGGAAGAGGTAATGGTGGTTTCCTTGG
AGGTGGACGAGGGTGTTCTCGAGGGGGGTGGGAATGGAGGAGGAGGAAGG
GAGGGAGGGAAGGCCGATGGAGGCGAGGAGGAGGGGCCAGAGGTGGAGAT
GTCGGCAGGCGGCGATGGTCCCAAGAGGGGAGCGGCAGAGGCAGCGGCAG
AGGAAGAGAAGGGCTTGTTGCTGGAAGACGGGAGCCCTATCCAGCTCACG
CCCAACTCCTGCGTTAAGATTGTCGTTCTGTAAATGAAGAATCTCAAGAG
CCATGTCTTGGACATTAGCCCAAGCCAGGAGGAGGGAGGGAGGGAGGGTG
GGGGAGAGGAAGAGGTAATGGTGGTTTCCTTGGAGGTGGACGAGGGTGTT
CTCGAGGGGGGTGGGAATGGAGGAGGAGGAAGGGAGGGAGGGAAGGCCGA
TGGAGGCGAGGAGGAGGGGCCAGAGGTGGAGATGTCGGCAGGCGGCGATG
GTCCCAAGAGGGGAGCGGCAGAGGCAGCGGCAGAGGAAGAGAAGGGCTTG
TTGCTGGAAGACGGGAGCCCTATCCAGCTCACGCCCAACTCCTGCGTTAA
GATTGTCGTTCTGTAA
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Synonyms
Publications