jgi.p|Nanoce1779_2|589504, mRNA_4540 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589504
Unique NamemRNA_4540
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1109
Alignment locationscaffold_10:878610..879718 -

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Properties
Property NameValue
TranscriptId589590
TrackFilteredModels2
ProteinId589504
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:878610..879718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589504gene_4540Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589504mRNA_4540-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4540CDS_4540Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4540 ID=mRNA_4540|Name=jgi.p|Nanoce1779_2|589504|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
TACCTTGTCGCAGCTGCTCATACAGCCCACTACCCACAAAGGGAGGGAGG
GAGGGAAGGAAAAAGAGGTAAAATTGCTGTATCAGTGCATGGCACTTGCC
ACGGCCTTGATGGCAGACAATGAGATGAATGCGCAAGCGTTCGTGTCCAC
GTTTTTGGTAATGGAGGAGGACGGAGGGGTAGAGGGAGAGGTAGGGGAGA
GGACAAGGCTGCACCGATCCTTGCTCTTTCATCTGCTGGTGTCAGGGGCG
GCGTTGAGGGATGTGCAAACAGTGCGCGTTCTTTTTGACTTGCTGGTCAC
TGGACCTTACCCCTGGGATGCCTCCATCCCTATCGCCTCGTCTTTCGCTT
CCTCCTCCTCTTCCTCCTCACCTTCTCCTTCTATTCCTTCCTCCGCTTTC
GTCCTCAAACTGCCCCCCCTCCTTCCCCTTCTCCTCCTCCTCCTCCCACA
TCTTCCCTCCCCTTCCCACCAAACACACCTTCTCCGCCTCCTCCACCTCA
TGATATCCACGCCGGCCAGGAAAGAGCATAATGCGCCCCTCCTCTCCCTT
TTGCTCCCTCCTCTCCTTGATCTCCTTCCCTCTCTGGACTCAGGGGAAGG
TGGGCCTCAAGAAATGGCTGTGCTCTTGCTGAAGGAGATCGGAGGATGGC
GAATCACGGTGGCAGATATGCGGAGGGTCCTTGGTTTAATGCATCCAATT
GCGCTTCAAACAGGCAGTGGTGCTACATTGCCTGCCGCTTTTGCTGCTGG
TACCGCTGGTGCTGCTCCTGATGACATGTCCTCGTCCTCCTCGTCCTTGT
CCCCATCTTCCTTTTCCCCGTCATTCCTGCAGCCAGTGTACGCACCGAAA
CTTCTAGAGGCGCTCGCGAATATGATCAAACTGGAGGAAGAAGGGAGGGA
GGGCGGAAAGGAAGGTCCATCGCAATATTTTCTGTTTGATGGCCTTCATG
CCGGGTTGCGTCTTCGCCCTATCACGCCGTGGAGTAAGAGACATTACACC
TTCTTCACTTGGCTTTGCGTCGATCCCTCCCTCTCCTTCTCCACCTCCTC
CTCTTCTTCCCCCTTCTTTCCCCTCCTCCTTCCCCTCCAGCTCTTCAGCT
TTGTAGCCG
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protein sequence of jgi.p|Nanoce1779_2|589504

>mRNA_4540-protein ID=mRNA_4540-protein|Name=jgi.p|Nanoce1779_2|589504|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MCKQCAFFLTCWSLDLTPGMPPSLSPRLSLPPPLPPHLLLLFLPPLSSSN
CPPSFPFSSSSSHIFPPLPTKHTFSASSTS*
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mRNA from alignment at scaffold_10:878610..879718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4540 ID=mRNA_4540|Name=jgi.p|Nanoce1779_2|589504|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp|location=Sequence derived from alignment at scaffold_10:878610..879718- (Nannochloropsis oceanica)
TACCTTGTCGCAGCTGCTCATACAGCCCACTACCCACAAAGGGAGGGAGG
GAGGGAAGGAAAAAGAGGTAAAATTGCTGTATCAGTGCATGGCACTTGCC
ACGGCCTTGATGGCAGACAATGAGATGAATGCGCAAGCGTTCGTGTCCAC
GTTTTTGGTAATGGAGGAGGACGGAGGGGTAGAGGGAGAGGTAGGGGAGA
GGACAAGGCTGCACCGATCCTTGCTCTTTCATCTGCTGGTGTCAGGGGCG
GCGTTGAGGGATGTGCAAACAGTGCGCGTTCTTTTTGACTTGCTGGTCAC
TGGACCTTACCCCTGGGATGCCTCCATCCCTATCGCCTCGTCTTTCGCTT
CCTCCTCCTCTTCCTCCTCACCTTCTCCTTCTATTCCTTCCTCCGCTTTC
GTCCTCAAACTGCCCCCCCTCCTTCCCCTTCTCCTCCTCCTCCTCCCACA
TCTTCCCTCCCCTTCCCACCAAACACACCTTCTCCGCCTCCTCCACCTCA
TGATATCCACGCCGGCCAGGAAAGAGCATAATGCGCCCCTCCTCTCCCTT
TTGCTCCCTCCTCTCCTTGATCTCCTTCCCTCTCTGGACTCAGGGGAAGG
TGGGCCTCAAGAAATGGCTGTGCTCTTGCTGAAGGAGATCGGAGGATGGC
GAATCACGGTGGCAGATATGCGGAGGGTCCTTGGTTTAATGCATCCAATT
GCGCTTCAAACAGGCAGTGGTGCTACATTGCCTGCCGCTTTTGCTGCTGG
TACCGCTGGTGCTGCTCCTGATGACATGTCCTCGTCCTCCTCGTCCTTGT
CCCCATCTTCCTTTTCCCCGTCATTCCTGCAGCCAGTGTACGCACCGAAA
CTTCTAGAGGCGCTCGCGAATATGATCAAACTGGAGGAAGAAGGGAGGGA
GGGCGGAAAGGAAGGTCCATCGCAATATTTTCTGTTTGATGGCCTTCATG
CCGGGTTGCGTCTTCGCCCTATCACGCCGTGGAGTAAGAGACATTACACC
TTCTTCACTTGGCTTTGCGTCGATCCCTCCCTCTCCTTCTCCACCTCCTC
CTCTTCTTCCCCCTTCTTTCCCCTCCTCCTTCCCCTCCAGCTCTTCAGCT
TTGTAGCCG
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Coding sequence (CDS) from alignment at scaffold_10:878610..879718-

>mRNA_4540 ID=mRNA_4540|Name=jgi.p|Nanoce1779_2|589504|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_10:878610..879718- (Nannochloropsis oceanica)
ATGTGCAAACAGTGCGCGTTCTTTTTGACTTGCTGGTCACTGGACCTTAC
CCCTGGGATGCCTCCATCCCTATCGCCTCGTCTTTCGCTTCCTCCTCCTC
TTCCTCCTCACCTTCTCCTTCTATTCCTTCCTCCGCTTTCGTCCTCAAAC
TGCCCCCCCTCCTTCCCCTTCTCCTCCTCCTCCTCCCACATCTTCCCTCC
CCTTCCCACCAAACACACCTTCTCCGCCTCCTCCACCTCATGA
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Synonyms
Publications