jgi.p|Nanoce1779_2|577364, mRNA_454 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577364
Unique NamemRNA_454
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1021
Alignment locationscaffold_3:1116051..1117071 -

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Properties
Property NameValue
TranscriptId577450
TrackFilteredModels2
ProteinId577364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1116051..1117071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577364gene_454Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577364mRNA_454-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_454CDS_454Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_454 ID=mRNA_454|Name=jgi.p|Nanoce1779_2|577364|organism=Nannochloropsis oceanica|type=mRNA|length=1021bp
GTTTGCTTGTCTTATGCTAAGAGGCAGGAGGTTTTGTTTTTGGGGTGATG
CGCGACCGATCACGCTCTCGTGACCACCGTATAGTAGTTATTTGATTTTC
AATACGGTAAGTATTTTTTCCTGCACCAGCAATTTTTCCGATGTGACCAG
CGCTTCCTTTTCCTGGGTGGCACAAGAAGTCGCTCGCTGATATCATGATT
CTGCGTTATGTGCCTGTGTTATCCCAGATCACACAGCGAAGACCACTCAC
CGCATGCATTATGGCCCACTCACCTCAGGTATCCATGCTGACAGATGAGC
AAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCCTTGGCGTTGCGAGCT
CAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCAGCAGAAGGAGGGCGG
GGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTACCACGGACGGCTACG
AAGACGACGGTGGGAATAAAACCCAAAGCACAAGAACTATCCCAGCAGCG
TCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAAGGATGGTATGTCGTG
CGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTTTTCAAGAAGTCTTTG
GCATCCTAGTATGCTCACCATGCAAGAGCAACGATGAGGATGAATATGGG
CTTATGACAAAGGGAGATGCAGTTGCCGAATTTCTGTTGCAAGAAGGGAC
GATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACCCCCGCAATACGAAGT
ATACCAAGATGAAGCTATATTGCCGAAAACAATTGCGGGCAAAGGCGTAC
GAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGAGGTTGAACGGCGGAA
GAAGCGGAGGTATGAGAATGCCCTGGAAAAAATGGTGAATATATTCGATA
CTCAAAAGAAGAAATGGACCCCGCCATGAGGAGGGTGAGGAAGAGAAAGA
CGTAGGACTTGGGTACATGAGTGGGGGGAGAGTAAACGTAATCAAGAGAG
AGATATGCAATGTACGTTTGC
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protein sequence of jgi.p|Nanoce1779_2|577364

>mRNA_454-protein ID=mRNA_454-protein|Name=jgi.p|Nanoce1779_2|577364|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MILRYVPVLSQITQRRPLTACIMAHSPQVSMLTDEQKARIEENRRRALAL
RAQKLQEQQHREQQQKEGGALHELLAQGGFTTDGYEDDGGNKTQSTRTIP
AASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDE
YGLMTKGDAVAEFLLQEGTIRVMPFLERSNPRNTKYTKMKLYCRKQLRAK
AYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKKKWTPP*
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mRNA from alignment at scaffold_3:1116051..1117071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_454 ID=mRNA_454|Name=jgi.p|Nanoce1779_2|577364|organism=Nannochloropsis oceanica|type=mRNA|length=1021bp|location=Sequence derived from alignment at scaffold_3:1116051..1117071- (Nannochloropsis oceanica)
GTTTGCTTGTCTTATGCTAAGAGGCAGGAGGTTTTGTTTTTGGGGTGATG
CGCGACCGATCACGCTCTCGTGACCACCGTATAGTAGTTATTTGATTTTC
AATACGGTAAGTATTTTTTCCTGCACCAGCAATTTTTCCGATGTGACCAG
CGCTTCCTTTTCCTGGGTGGCACAAGAAGTCGCTCGCTGATATCATGATT
CTGCGTTATGTGCCTGTGTTATCCCAGATCACACAGCGAAGACCACTCAC
CGCATGCATTATGGCCCACTCACCTCAGGTATCCATGCTGACAGATGAGC
AAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCCTTGGCGTTGCGAGCT
CAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCAGCAGAAGGAGGGCGG
GGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTACCACGGACGGCTACG
AAGACGACGGTGGGAATAAAACCCAAAGCACAAGAACTATCCCAGCAGCG
TCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAAGGATGGTATGTCGTG
CGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTTTTCAAGAAGTCTTTG
GCATCCTAGTATGCTCACCATGCAAGAGCAACGATGAGGATGAATATGGG
CTTATGACAAAGGGAGATGCAGTTGCCGAATTTCTGTTGCAAGAAGGGAC
GATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACCCCCGCAATACGAAGT
ATACCAAGATGAAGCTATATTGCCGAAAACAATTGCGGGCAAAGGCGTAC
GAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGAGGTTGAACGGCGGAA
GAAGCGGAGGTATGAGAATGCCCTGGAAAAAATGGTGAATATATTCGATA
CTCAAAAGAAGAAATGGACCCCGCCATGAGGAGGGTGAGGAAGAGAAAGA
CGTAGGACTTGGGTACATGAGTGGGGGGAGAGTAAACGTAATCAAGAGAG
AGATATGCAATGTACGTTTGC
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Coding sequence (CDS) from alignment at scaffold_3:1116051..1117071-

>mRNA_454 ID=mRNA_454|Name=jgi.p|Nanoce1779_2|577364|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_3:1116051..1117071- (Nannochloropsis oceanica)
ATGATTCTGCGTTATGTGCCTGTGTTATCCCAGATCACACAGCGAAGACC
ACTCACCGCATGCATTATGGCCCACTCACCTCAGGTATCCATGCTGACAG
ATGAGCAAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCCTTGGCGTTG
CGAGCTCAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCAGCAGAAGGA
GGGCGGGGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTACCACGGACG
GCTACGAAGACGACGGTGGGAATAAAACCCAAAGCACAAGAACTATCCCA
GCAGCGTCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAAGGATGGTAT
GTCGTGCGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTTTTCAAGAAG
TCTTTGGCATCCTAGTATGCTCACCATGCAAGAGCAACGATGAGGATGAA
TATGGGCTTATGACAAAGGGAGATGCAGTTGCCGAATTTCTGTTGCAAGA
AGGGACGATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACCCCCGCAATA
CGAAGTATACCAAGATGAAGCTATATTGCCGAAAACAATTGCGGGCAAAG
GCGTACGAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGAGGTTGAACG
GCGGAAGAAGCGGAGGTATGAGAATGCCCTGGAAAAAATGGTGAATATAT
TCGATACTCAAAAGAAGAAATGGACCCCGCCATGA
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Synonyms
Publications