jgi.p|Nanoce1779_2|589502, mRNA_4539 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589502
Unique NamemRNA_4539
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length418
Alignment locationscaffold_10:876965..877382 -

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Properties
Property NameValue
TranscriptId589588
TrackFilteredModels2
ProteinId589502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:876965..877382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589502gene_4539Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589502mRNA_4539-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4539CDS_4539Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4539 ID=mRNA_4539|Name=jgi.p|Nanoce1779_2|589502|organism=Nannochloropsis oceanica|type=mRNA|length=418bp
AGCAGTAGCAGCAGCAGCAGCACCAGCAGCGGGTGCACGGAGTCTGCTGC
TTTAATTGTCGATATGGTGGGCGTACTGGTCGAATCGTGCAGCAGAAGCA
GCAGCAGCAGCAGAAGCAGGAGCAGCAGCAGGAGCAGCGGTAGTATCAGC
AACAGCTTGGCCTTCTTCCTCCCCTATGGTCACGTGCCGCAGCAGCAACA
AAAGCAGCAACAGCTGTCACATCATGGCGACAACGGCAGCCTTGTTCTCG
CGCATTTTCTGGCGCACATTCCATCGTCCCAGCTCACCCTCGACCTTCTC
CGGGCAGTACAGAGGCTCATCACACGCATCACCACTGCTGCTTCTGCTGC
TGCTGCTACTACGTCTGCTGCTGCATCTTCTCTCCTAACCAAGACACTCC
TCACAGACCTTCTTTTCG
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protein sequence of jgi.p|Nanoce1779_2|589502

>mRNA_4539-protein ID=mRNA_4539-protein|Name=jgi.p|Nanoce1779_2|589502|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MVTCRSSNKSSNSCHIMATTAALFSRIFWRTFHRPSSPSTFSGQYRGSSH
ASPLLLLLLLLLRLLLHLLS*
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mRNA from alignment at scaffold_10:876965..877382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4539 ID=mRNA_4539|Name=jgi.p|Nanoce1779_2|589502|organism=Nannochloropsis oceanica|type=mRNA|length=418bp|location=Sequence derived from alignment at scaffold_10:876965..877382- (Nannochloropsis oceanica)
AGCAGTAGCAGCAGCAGCAGCACCAGCAGCGGGTGCACGGAGTCTGCTGC
TTTAATTGTCGATATGGTGGGCGTACTGGTCGAATCGTGCAGCAGAAGCA
GCAGCAGCAGCAGAAGCAGGAGCAGCAGCAGGAGCAGCGGTAGTATCAGC
AACAGCTTGGCCTTCTTCCTCCCCTATGGTCACGTGCCGCAGCAGCAACA
AAAGCAGCAACAGCTGTCACATCATGGCGACAACGGCAGCCTTGTTCTCG
CGCATTTTCTGGCGCACATTCCATCGTCCCAGCTCACCCTCGACCTTCTC
CGGGCAGTACAGAGGCTCATCACACGCATCACCACTGCTGCTTCTGCTGC
TGCTGCTACTACGTCTGCTGCTGCATCTTCTCTCCTAACCAAGACACTCC
TCACAGACCTTCTTTTCG
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Coding sequence (CDS) from alignment at scaffold_10:876965..877382-

>mRNA_4539 ID=mRNA_4539|Name=jgi.p|Nanoce1779_2|589502|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_10:876965..877382- (Nannochloropsis oceanica)
ATGGTCACGTGCCGCAGCAGCAACAAAAGCAGCAACAGCTGTCACATCAT
GGCGACAACGGCAGCCTTGTTCTCGCGCATTTTCTGGCGCACATTCCATC
GTCCCAGCTCACCCTCGACCTTCTCCGGGCAGTACAGAGGCTCATCACAC
GCATCACCACTGCTGCTTCTGCTGCTGCTGCTACTACGTCTGCTGCTGCA
TCTTCTCTCCTAA
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Synonyms
Publications