jgi.p|Nanoce1779_2|26589, mRNA_4538 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|26589
Unique Name	mRNA_4538
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	6363
Alignment location	scaffold_10:869557..875919 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	26675
Track	FilteredModels2
ProteinId	26589

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:869557..875919 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26589	gene_4538	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26589	mRNA_4538-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4538	CDS_4538	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:869557..875919-
coding sequence from alignment at scaffold_10:869557..875919-

mRNA sequence

>mRNA_4538 ID=mRNA_4538|Name=jgi.p|Nanoce1779_2|26589|organism=Nannochloropsis oceanica|type=mRNA|length=6363bp
CTGGCGCTACTGCAGCGGCTGCTGCTCGTGCATATAGCAAATTGTCGAAC
AATACATTTCGCCGTCCCTCCTCTGCATCTGCGGGGGAAGGAGGTGGTGG
GTCAGAAGGACACAAAGAGGGAGGAGAACGTGAAAAAGGAGGAGAAGGTG
AAGGAAAAGGAGAGGGTGAGTTTGCCGCCTCGTCCTCGATATCCTCTTCC
TCCCCTACCAGCTCCTCCCCCTCCTTGCTTATGCAAGGACTCCTTCCTCC
TCCATTCGCACCAGGCGACGAGGACCATAGCAAAGCAGCTCCTTCCTTCG
ATTGGGAGGAGGCACGCGTGACGGAAGTCTTTTTTATCATGGGCCACGCA
TTCCTCCGCGATGATGTTCCAGTCGTAGCGAAAAAGCTGGCAGCGGAGAT
GCTCTGGTCAGTAGCCACTTCCTCCTTCCCTTCCTTGTCCTCGTCCTCGT
TGTTTTGGCCTCTCGAAAGCAGAGAATGTCGGTCTCATTTAGAGCTGCCT
TTTTGGTTTGAGAGATTGGCAAGCGAGGATGAGGAGGAGAAGCCCAGCAG
CAGCTGCAGCAGCAGCAGCAGCAGCAGCAGTAACATTGAAAATAGTGGTA
GAAATATGATCGCTTTCCGAGCGGTCATTCCCGCGCTTTTACTGCTGGAC
GAGCATATTAGAGAAGGTGAGGAGAAGGAGAGACAAAAAAGTAGCAGCAG
CAGCAGTGGGGCATGCAAAGCCTTTATTGCGACCGTAGCGACAGCAACAG
CAGCAACAACAGCAGCAGCAACAACAACAACGGTTGACCGCATCACGTAC
AAGGAAGAGGGAATACTCGAAGATGCTGTCCTTGCACTTGAGAGGCTGAA
GACTACCTTCCTGTCTCCTCTCATTGTCCCTCATGCGCCTCCTACCTCTA
CATCTGTCAGTACTCCACTGCCGCTGGTGCAGCGGCTTCAAAGTCGCTTG
CTTACCGTCTTCCAGCACCGGCAACGACAGGGTCTGGCTCGGTTAAAAGA
CACGCTTAGAGCGTACAGAGAAGAGGAGATATGGACATGGCGACGGTGTT
ACAGCTTTTTGTTGGGAGAGGAGGAAGTCGTCGGGGGGGAGGGAGGGCCG
TGGGGCGCAGAGATCTGCCGGAACGCGTTTATACGATGGATGAAAGAGAA
GCGGAGAGTGAGAGGCGGACGGTTCGTTGCTGACGGTGGGGGGAAGGGTA
AGGAGCAGGAGGATGAGGAGGAAGGGGGGGAGGTTGTATCGTGGATGGTG
GATGATGCAGAGGATCATCTCAGGCATCGATGGAAGCTCGTTAGAAGACC
ATGGGCGACTGTATGGGTGCCTCCATCACCAGCAGCAGCAGCAGCAGTAG
CTGCAGCCATGACAGCATCAGGAGGGGCAGAGGTGGAGCGAGAGGATTTA
GAGGAGGAAGAGGAGGAGGACGTGGCGGCGTTGCTGCGGCACGCTCAGGC
ACCACTGAGGGGGGGCGGGAGGAAAGGGAGAGGATCTACTGTTTGTAGTG
ATGCTGAAGCTGGAGTTGGGACGGTTACAGCAGCAGCAACAGTAGACGAA
GAGGAGATGAAACTAAAGCTCCCGATATTGCCGTTGTTGGTTAAGTCCCA
GGAGGAGGAAAGTGAGATGGAGCAGCAACAGCAGCAACAGCAACAGGAGA
GGGAGTGGGAGAAGACTAAGGAGAGGAGGGAGGATGTGGTTGATTTGTCG
CAAACAGTTCTTTGGAAGGAGCTGGCCAAATACCAGAAGAGGGAGGAGGA
AGGGGAGGAGGAAGAGGAGGAGGAGGATGATGAGGAGGATGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGGGGAGCAGCAGGAGGGTGAGGAGGAGAAG
GAGCAACAGCAGCAGCGTCAGTGTTCTGACGCTGGGTCCAGCATTACGAG
CACAAGCGAGGTCTGTATTGGAAAGCCGCAGATCGCGGAGGAAGAAGGGA
AGGCGAAGAAATTGGAGAAGGTGAAGGAGGAAGAGCAAGCGCGGGAAGAG
GATGTGGGGGTGGTCGTCCCTTCTGCCCCGACTACTGCGCCGACGGGTTG
TTCAAAGGTCGGCCAACCCAGCTCGGCAAACTCTATTGCTCCCGGAGGCG
ACAGAATCACGGCGGCAATAGAAGGAGGAAGGGGAGGAGGAGGAGGACGA
GGAGGAAGGGGATGGGAACGAGCGCAACGGACGAGGGTGACGTTGCTGGC
AGGGCCGTGGCAATCCAGAGGATGGGGGGCTCGGAGCTCTATCCCCTTCG
ACCATATCCTTGCCTCTCCCTCCCCCCATTTGTCCTCCACCCTGCCCCCC
CCTTCCTCCCACGTCCTTCCCGATGCAGCCCGTCGTTTGCGGACCACGAC
CAGAAGCGGGTTTCTCGGCGGAGAGGACAAAATAAGAGCAGGAAGAGGAG
GAGGTGGAAAAGGAGCTGGGGGATGGTTACCGGAAGGCAAGATAGACGAG
GCTGTGTTTGGAGCGATCAAGGAGTCGCAGCCCTGCGAAGTCATCCGTCC
CTGTGGAGCTTCTCCGGGTATCTTTCAAGTCACCACCCGCTGCCTTCGCT
TCCTCCTCTACCCCACTCCCCCTTCCTCCCTCCCCCCTCCCCACGCTGTC
GACGGGGGACGGACAAGCACACGCTGGTCTCTCCTCCCTTACCCCTCCAC
CCTCTTCCTCCTCTCTGACCTCCATGCTCTCTACCTCCGCCGCCACCAAC
AGCAAGATTCCTTGGCCCTCGAATTTTTCTTCCTGGACCGCTCGACCCTC
TTCCTCACCTTTTCCTCCAAGCCAATCACCCTCGGGATCTACAAGGCCAT
CCGCAAGCTCCACAGCCCGTCTCTCGAACCCCATCTCGGGCACACCCCTC
GGCAATTGCTCGCTCGCTTCAAAACCTCGCAAAACCACTCCCTGACACAA
GCGTGGGTCAATCGTGAAATATCAAATTTTGAATACTTGAGCAAATTGAA
CTTGTTGGCGGGAAGGACGGTGAATGATTTGTCGCAATACCCTGTGTTTC
CGTGGGTGTTAGCTGACTACACGTCGGATACGTTGGAGTTGGACGAGAGG
AGGAGCTTTCGGGATTTACGGTGGCCGATGGGAGCGCAGAGGGAGGAGGC
AAGGGAGGCATTGAGAAGGACATATGCGATGTTGGAGGAGGTATACTTGA
ATGAGGCGAGGGAGGGAGGGAGGGAAGGGGAGGCGGTGGATTCGATACCG
CCGTTTCAACATGGCTCCCATTATTCCACGGCGGCGTTTGTGGCGTGGTA
CTTGGTCAGAGTCGAGCCATTCACCTCCTTCCACCTCCACTTGCAAGGAG
GAAAATTCGACCTTCCCGACCGGCAGTTCCGGTCCCTCCACGCCGCCTAC
CAAGGGTGCGTGACGAACCCGTCGGACGTAAAGGAATTAATTCCTGAGTT
CTTTTACCTCCCTGATTTCCTGCGTAATGTGAACAAGGTATATCTAGGAC
GGACTCAGAGAGGGGAGGAGGTGGGGGACGTGGAGCTGCCGCCATGGGCA
GGGGGCACGGCGGAAGAGTTTGTGAGGCTGCACAGGGAGGCCTTGGAGAG
CGAGTGTGTGAGCGAGATGTTGCATCACTGGATAGACCTAATATTTGGGT
GCAAGCAGCGACCACCGTACCTCCCACTTTCCTCCTCCTCCTCGTCTGCC
TCCTCCGCCTTGGTAAACGCTGTACGGAGGGGCAGCAATGCTGTCAGTGG
TGCGAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGCAACAGCAGCAGCACCAGCTGTGGCGGCGTGCAACGTTTTTTTCAAC
CTCACCTACCACGACGCCATCGACCTGCCCGCTTTGAAAGCTGATGACCC
AGTGCTCTACGAGGCCACCTTAAGGCAGATTCAGGATTTTGGCCAAACCC
CTTGCCAGCTCTTTCTCACCCCTCACCCGCCCCGTGCGCTCCTCCACCAA
GCGTCGGAGCTGATATGGCCCATAGCCAGCGTTGTTCCCGGGGCTGGCAC
CTCCCTCCCTCCCTCGTCCTCGTCCTCGTCCTCGTCCACTTCGGCAGACA
CGGACATGGAAAAAGCGGGGCTGGAGATCCCCTCCTCCCTCGACTCCTCC
GCCCTTGCCTCCCCCCCCTCCGCCTCCGCCTCCTCCTCCCCCTCCTCCTC
CTCCTCCCTCGCCCCCCTCACAGGCAGAAACGTTGTCTCTGGACCTTCAT
TACCCAAACCCGAACGCTTTCTCTCCTTTCCCCCCTCCCTCCTGTCCTCC
TCTCCAACTTCCCCCCTCTTGCTCTGTGTGGAAAGGGGAGGATGCGACCG
TCTCGTCTCGGTAGATGGGAGATCGCACGTCCGCTGGCACGGCTGGTGTG
TGCTGAGCCCTGATGTTGTCCCTCCCTTTAAGTTGAAGCCTGACCCACGA
GGCGGAGGGAGGGAGGCAGGGCGGGAAAGAGGAAAGGAGGAGGTAGCGTT
GGATGCGGAGACGGGGTTGCTCTTTACGTGCGGGTATGTAGATTGTTCAT
TCAAGGTGGCTGCAGTGGAAGACCCTTACTCCTCCTCGACCTCAGACGAA
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGG
CGGCGAATTGATACAGTCTGTGGGAGGCCATGCGGACATTGTGCGGTGTC
TTGCTTTAGGGAAAGATGTGAGATTTTCGCACCACATAACGTATACTACA
TGTACCACCACAGCCGCTGCCACCGCGTTGGCAGCACGTGGGGAGGGAGG
GAGGGAGGGCAGGAAGGAGGGAGGGAGAGGGAGGGCGTTTTTGGTCTCTG
GGTCGGAGGACTGCACAGTGAGGGTTTGGAGGGTGAGGGGGAAGGGAGGG
AGGGAGGGAGGGAGGGAGGCAGCGGGGAGTGTCGAAAATGTTACTGCGGC
ATTAAGAGGAGGAGGAGAGGGAGGAAGGGGAGGGGGAGGAGGAGAACCTG
TCTGTCCCGAGCCTTTGCATATTTTGAGGGGGCATGCAGAGGGTGTGACG
GCCGTGGCGGTGAGCGTTGCGCTGGACGTGGTGCTGTCAGGGGCGAGGGA
TGGGACTGTGTTGGTGCACTCTCTGCGAGACGGGAGGTATATACGGACAT
TGAGGAGAGGGGGAGGGAGGGAGGGAGGGCAAGGGAAGGGTGACAGTGGC
GCGGAGCTACCCCCGCTACTGATGTTGGGGTCGGTGCCGGTAGAAGAGGT
CGAGGTAGAGGAAGAGGGGAAGCAGGCATTGGAGGGACAGCACGAAAAGC
CGAAAAGGAGGGCAAGGCTTCCATGCTCCTCTTCCCCTCACTCCCCCCGC
GCCATCCACTGGGTTGGAATCTCCCCTGCCGGCTACCTCCTTTCCTACTC
CCGCTCATCCGGACTACTCACTTCGCACAGCCTGAACGGCCGGCTGCTCG
CCCGCGTGTCCTCGAGCCCTGCCTCCCTCTATGCCTTCACCTTCTCGGAG
GACGGAAACGTCGTCCTCCTGGGGGGGGATAACAAAAAAGTGCTCTTGTT
ATGGTGTCACTCCCTGCGACTCGCCTCGGATGGGGCAAGGCGGGGGTTGG
AAGGCCTGGCCGTTACCGATGGAGGGTGCGCGGATTTGTCCGTTACACCT
TTCCCGGCAACGGTCCGTTGCTTGGCGTTGACGGCGCATGAGAGGCATCT
ACTGGTGGGTCTAGAGAATGGCCAGGCGTATGTGTTAGCCCCTGAGGCGG
AATACTTGAGGACGCGCTTGAAGGTTAAGCTGGAGACGATGGGCTTTTAC
TAGGAAGGGAAGTGAGGGAAAGAGGATGTTGGAGGAAGGAGGATGGAACA
AGAAGGTTGACGAAGGGAGAAGAAGAGTAATTTAACGACAAGCGAATTAT
TCTTCGTGTAAGTAAGAGTATCATCGAAGATACAGACACAGAAATCAGAG
CCGAAAGTGTGTCGAGCCAGGTACGACAGGAGAATTCGATGCCAATTAAT
AGTGTACATACACACACACACTCCAAGAAACCTCAAACAGCATAATCGTT
AAAATAGCAACATAAACCGTGCATAGGGAAAAAAATTTAAGATAGGCTCG
TGTGAAATCAAGAGGGAGGGGCGAAACGAAAGGGAAGCGGCCGCAGTGTT
CTTAGTCTCTTTCTCGGAAGGCAGAACACCTCCCTCTCCTCCTCATCATT
CCTTTTCTTCTTCTATCTTTTAGTCATTCGATTTCCATCTTCTATATTTC
GCCCTTTCGCGCGCTTTCTCTCTCTCCATCCCAAAAGATAACAAAAGATG
CACTCGCTAATCATAATTTCACATGGAGTGTTTGCTTCATTGAGTGTAGA
GAACTAATTTCGCTCTCCCTTACTCTCTGTGTCTCACGCACACTCCCTCC
CTTTCTCTCTCGC

protein sequence of jgi.p|Nanoce1779_2|26589

>mRNA_4538-protein ID=mRNA_4538-protein|Name=jgi.p|Nanoce1779_2|26589|organism=Nannochloropsis oceanica|type=polypeptide|length=1841bp
MQGLLPPPFAPGDEDHSKAAPSFDWEEARVTEVFFIMGHAFLRDDVPVVA
KKLAAEMLWSVATSSFPSLSSSSLFWPLESRECRSHLELPFWFERLASED
EEEKPSSSCSSSSSSSSNIENSGRNMIAFRAVIPALLLLDEHIREGEEKE
RQKSSSSSSGACKAFIATVATATAATTAAATTTTVDRITYKEEGILEDAV
LALERLKTTFLSPLIVPHAPPTSTSVSTPLPLVQRLQSRLLTVFQHRQRQ
GLARLKDTLRAYREEEIWTWRRCYSFLLGEEEVVGGEGGPWGAEICRNAF
IRWMKEKRRVRGGRFVADGGGKGKEQEDEEEGGEVVSWMVDDAEDHLRHR
WKLVRRPWATVWVPPSPAAAAAVAAAMTASGGAEVEREDLEEEEEEDVAA
LLRHAQAPLRGGGRKGRGSTVCSDAEAGVGTVTAAATVDEEEMKLKLPIL
PLLVKSQEEESEMEQQQQQQQQEREWEKTKERREDVVDLSQTVLWKELAK
YQKREEEGEEEEEEEDDEEDEEEEEEEEEEGEQQEGEEEKEQQQQRQCSD
AGSSITSTSEVCIGKPQIAEEEGKAKKLEKVKEEEQAREEDVGVVVPSAP
TTAPTGCSKVGQPSSANSIAPGGDRITAAIEGGRGGGGGRGGRGWERAQR
TRVTLLAGPWQSRGWGARSSIPFDHILASPSPHLSSTLPPPSSHVLPDAA
RRLRTTTRSGFLGGEDKIRAGRGGGGKGAGGWLPEGKIDEAVFGAIKESQ
PCEVIRPCGASPGIFQVTTRCLRFLLYPTPPSSLPPPHAVDGGRTSTRWS
LLPYPSTLFLLSDLHALYLRRHQQQDSLALEFFFLDRSTLFLTFSSKPIT
LGIYKAIRKLHSPSLEPHLGHTPRQLLARFKTSQNHSLTQAWVNREISNF
EYLSKLNLLAGRTVNDLSQYPVFPWVLADYTSDTLELDERRSFRDLRWPM
GAQREEAREALRRTYAMLEEVYLNEAREGGREGEAVDSIPPFQHGSHYST
AAFVAWYLVRVEPFTSFHLHLQGGKFDLPDRQFRSLHAAYQGCVTNPSDV
KELIPEFFYLPDFLRNVNKVYLGRTQRGEEVGDVELPPWAGGTAEEFVRL
HREALESECVSEMLHHWIDLIFGCKQRPPYLPLSSSSSSASSALVNAVRR
GSNAVSGAKEGGGGGGGGGGGGGGATAAAPAVAACNVFFNLTYHDAIDLP
ALKADDPVLYEATLRQIQDFGQTPCQLFLTPHPPRALLHQASELIWPIAS
VVPGAGTSLPPSSSSSSSSTSADTDMEKAGLEIPSSLDSSALASPPSASA
SSSPSSSSSLAPLTGRNVVSGPSLPKPERFLSFPPSLLSSSPTSPLLLCV
ERGGCDRLVSVDGRSHVRWHGWCVLSPDVVPPFKLKPDPRGGGREAGRER
GKEEVALDAETGLLFTCGYVDCSFKVAAVEDPYSSSTSDESSSSSSSSSS
SSSSSGGGELIQSVGGHADIVRCLALGKDVRFSHHITYTTCTTTAAATAL
AARGEGGREGRKEGGRGRAFLVSGSEDCTVRVWRVRGKGGREGGREAAGS
VENVTAALRGGGEGGRGGGGGEPVCPEPLHILRGHAEGVTAVAVSVALDV
VLSGARDGTVLVHSLRDGRYIRTLRRGGGREGGQGKGDSGAELPPLLMLG
SVPVEEVEVEEEGKQALEGQHEKPKRRARLPCSSSPHSPRAIHWVGISPA
GYLLSYSRSSGLLTSHSLNGRLLARVSSSPASLYAFTFSEDGNVVLLGGD
NKKVLLLWCHSLRLASDGARRGLEGLAVTDGGCADLSVTPFPATVRCLAL
TAHERHLLVGLENGQAYVLAPEAEYLRTRLKVKLETMGFY*

mRNA from alignment at scaffold_10:869557..875919-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4538 ID=mRNA_4538|Name=jgi.p|Nanoce1779_2|26589|organism=Nannochloropsis oceanica|type=mRNA|length=6363bp|location=Sequence derived from alignment at scaffold_10:869557..875919- (Nannochloropsis oceanica)
CTGGCGCTACTGCAGCGGCTGCTGCTCGTGCATATAGCAAATTGTCGAAC
AATACATTTCGCCGTCCCTCCTCTGCATCTGCGGGGGAAGGAGGTGGTGG
GTCAGAAGGACACAAAGAGGGAGGAGAACGTGAAAAAGGAGGAGAAGGTG
AAGGAAAAGGAGAGGGTGAGTTTGCCGCCTCGTCCTCGATATCCTCTTCC
TCCCCTACCAGCTCCTCCCCCTCCTTGCTTATGCAAGGACTCCTTCCTCC
TCCATTCGCACCAGGCGACGAGGACCATAGCAAAGCAGCTCCTTCCTTCG
ATTGGGAGGAGGCACGCGTGACGGAAGTCTTTTTTATCATGGGCCACGCA
TTCCTCCGCGATGATGTTCCAGTCGTAGCGAAAAAGCTGGCAGCGGAGAT
GCTCTGGTCAGTAGCCACTTCCTCCTTCCCTTCCTTGTCCTCGTCCTCGT
TGTTTTGGCCTCTCGAAAGCAGAGAATGTCGGTCTCATTTAGAGCTGCCT
TTTTGGTTTGAGAGATTGGCAAGCGAGGATGAGGAGGAGAAGCCCAGCAG
CAGCTGCAGCAGCAGCAGCAGCAGCAGCAGTAACATTGAAAATAGTGGTA
GAAATATGATCGCTTTCCGAGCGGTCATTCCCGCGCTTTTACTGCTGGAC
GAGCATATTAGAGAAGGTGAGGAGAAGGAGAGACAAAAAAGTAGCAGCAG
CAGCAGTGGGGCATGCAAAGCCTTTATTGCGACCGTAGCGACAGCAACAG
CAGCAACAACAGCAGCAGCAACAACAACAACGGTTGACCGCATCACGTAC
AAGGAAGAGGGAATACTCGAAGATGCTGTCCTTGCACTTGAGAGGCTGAA
GACTACCTTCCTGTCTCCTCTCATTGTCCCTCATGCGCCTCCTACCTCTA
CATCTGTCAGTACTCCACTGCCGCTGGTGCAGCGGCTTCAAAGTCGCTTG
CTTACCGTCTTCCAGCACCGGCAACGACAGGGTCTGGCTCGGTTAAAAGA
CACGCTTAGAGCGTACAGAGAAGAGGAGATATGGACATGGCGACGGTGTT
ACAGCTTTTTGTTGGGAGAGGAGGAAGTCGTCGGGGGGGAGGGAGGGCCG
TGGGGCGCAGAGATCTGCCGGAACGCGTTTATACGATGGATGAAAGAGAA
GCGGAGAGTGAGAGGCGGACGGTTCGTTGCTGACGGTGGGGGGAAGGGTA
AGGAGCAGGAGGATGAGGAGGAAGGGGGGGAGGTTGTATCGTGGATGGTG
GATGATGCAGAGGATCATCTCAGGCATCGATGGAAGCTCGTTAGAAGACC
ATGGGCGACTGTATGGGTGCCTCCATCACCAGCAGCAGCAGCAGCAGTAG
CTGCAGCCATGACAGCATCAGGAGGGGCAGAGGTGGAGCGAGAGGATTTA
GAGGAGGAAGAGGAGGAGGACGTGGCGGCGTTGCTGCGGCACGCTCAGGC
ACCACTGAGGGGGGGCGGGAGGAAAGGGAGAGGATCTACTGTTTGTAGTG
ATGCTGAAGCTGGAGTTGGGACGGTTACAGCAGCAGCAACAGTAGACGAA
GAGGAGATGAAACTAAAGCTCCCGATATTGCCGTTGTTGGTTAAGTCCCA
GGAGGAGGAAAGTGAGATGGAGCAGCAACAGCAGCAACAGCAACAGGAGA
GGGAGTGGGAGAAGACTAAGGAGAGGAGGGAGGATGTGGTTGATTTGTCG
CAAACAGTTCTTTGGAAGGAGCTGGCCAAATACCAGAAGAGGGAGGAGGA
AGGGGAGGAGGAAGAGGAGGAGGAGGATGATGAGGAGGATGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGGGGAGCAGCAGGAGGGTGAGGAGGAGAAG
GAGCAACAGCAGCAGCGTCAGTGTTCTGACGCTGGGTCCAGCATTACGAG
CACAAGCGAGGTCTGTATTGGAAAGCCGCAGATCGCGGAGGAAGAAGGGA
AGGCGAAGAAATTGGAGAAGGTGAAGGAGGAAGAGCAAGCGCGGGAAGAG
GATGTGGGGGTGGTCGTCCCTTCTGCCCCGACTACTGCGCCGACGGGTTG
TTCAAAGGTCGGCCAACCCAGCTCGGCAAACTCTATTGCTCCCGGAGGCG
ACAGAATCACGGCGGCAATAGAAGGAGGAAGGGGAGGAGGAGGAGGACGA
GGAGGAAGGGGATGGGAACGAGCGCAACGGACGAGGGTGACGTTGCTGGC
AGGGCCGTGGCAATCCAGAGGATGGGGGGCTCGGAGCTCTATCCCCTTCG
ACCATATCCTTGCCTCTCCCTCCCCCCATTTGTCCTCCACCCTGCCCCCC
CCTTCCTCCCACGTCCTTCCCGATGCAGCCCGTCGTTTGCGGACCACGAC
CAGAAGCGGGTTTCTCGGCGGAGAGGACAAAATAAGAGCAGGAAGAGGAG
GAGGTGGAAAAGGAGCTGGGGGATGGTTACCGGAAGGCAAGATAGACGAG
GCTGTGTTTGGAGCGATCAAGGAGTCGCAGCCCTGCGAAGTCATCCGTCC
CTGTGGAGCTTCTCCGGGTATCTTTCAAGTCACCACCCGCTGCCTTCGCT
TCCTCCTCTACCCCACTCCCCCTTCCTCCCTCCCCCCTCCCCACGCTGTC
GACGGGGGACGGACAAGCACACGCTGGTCTCTCCTCCCTTACCCCTCCAC
CCTCTTCCTCCTCTCTGACCTCCATGCTCTCTACCTCCGCCGCCACCAAC
AGCAAGATTCCTTGGCCCTCGAATTTTTCTTCCTGGACCGCTCGACCCTC
TTCCTCACCTTTTCCTCCAAGCCAATCACCCTCGGGATCTACAAGGCCAT
CCGCAAGCTCCACAGCCCGTCTCTCGAACCCCATCTCGGGCACACCCCTC
GGCAATTGCTCGCTCGCTTCAAAACCTCGCAAAACCACTCCCTGACACAA
GCGTGGGTCAATCGTGAAATATCAAATTTTGAATACTTGAGCAAATTGAA
CTTGTTGGCGGGAAGGACGGTGAATGATTTGTCGCAATACCCTGTGTTTC
CGTGGGTGTTAGCTGACTACACGTCGGATACGTTGGAGTTGGACGAGAGG
AGGAGCTTTCGGGATTTACGGTGGCCGATGGGAGCGCAGAGGGAGGAGGC
AAGGGAGGCATTGAGAAGGACATATGCGATGTTGGAGGAGGTATACTTGA
ATGAGGCGAGGGAGGGAGGGAGGGAAGGGGAGGCGGTGGATTCGATACCG
CCGTTTCAACATGGCTCCCATTATTCCACGGCGGCGTTTGTGGCGTGGTA
CTTGGTCAGAGTCGAGCCATTCACCTCCTTCCACCTCCACTTGCAAGGAG
GAAAATTCGACCTTCCCGACCGGCAGTTCCGGTCCCTCCACGCCGCCTAC
CAAGGGTGCGTGACGAACCCGTCGGACGTAAAGGAATTAATTCCTGAGTT
CTTTTACCTCCCTGATTTCCTGCGTAATGTGAACAAGGTATATCTAGGAC
GGACTCAGAGAGGGGAGGAGGTGGGGGACGTGGAGCTGCCGCCATGGGCA
GGGGGCACGGCGGAAGAGTTTGTGAGGCTGCACAGGGAGGCCTTGGAGAG
CGAGTGTGTGAGCGAGATGTTGCATCACTGGATAGACCTAATATTTGGGT
GCAAGCAGCGACCACCGTACCTCCCACTTTCCTCCTCCTCCTCGTCTGCC
TCCTCCGCCTTGGTAAACGCTGTACGGAGGGGCAGCAATGCTGTCAGTGG
TGCGAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGCAACAGCAGCAGCACCAGCTGTGGCGGCGTGCAACGTTTTTTTCAAC
CTCACCTACCACGACGCCATCGACCTGCCCGCTTTGAAAGCTGATGACCC
AGTGCTCTACGAGGCCACCTTAAGGCAGATTCAGGATTTTGGCCAAACCC
CTTGCCAGCTCTTTCTCACCCCTCACCCGCCCCGTGCGCTCCTCCACCAA
GCGTCGGAGCTGATATGGCCCATAGCCAGCGTTGTTCCCGGGGCTGGCAC
CTCCCTCCCTCCCTCGTCCTCGTCCTCGTCCTCGTCCACTTCGGCAGACA
CGGACATGGAAAAAGCGGGGCTGGAGATCCCCTCCTCCCTCGACTCCTCC
GCCCTTGCCTCCCCCCCCTCCGCCTCCGCCTCCTCCTCCCCCTCCTCCTC
CTCCTCCCTCGCCCCCCTCACAGGCAGAAACGTTGTCTCTGGACCTTCAT
TACCCAAACCCGAACGCTTTCTCTCCTTTCCCCCCTCCCTCCTGTCCTCC
TCTCCAACTTCCCCCCTCTTGCTCTGTGTGGAAAGGGGAGGATGCGACCG
TCTCGTCTCGGTAGATGGGAGATCGCACGTCCGCTGGCACGGCTGGTGTG
TGCTGAGCCCTGATGTTGTCCCTCCCTTTAAGTTGAAGCCTGACCCACGA
GGCGGAGGGAGGGAGGCAGGGCGGGAAAGAGGAAAGGAGGAGGTAGCGTT
GGATGCGGAGACGGGGTTGCTCTTTACGTGCGGGTATGTAGATTGTTCAT
TCAAGGTGGCTGCAGTGGAAGACCCTTACTCCTCCTCGACCTCAGACGAA
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGG
CGGCGAATTGATACAGTCTGTGGGAGGCCATGCGGACATTGTGCGGTGTC
TTGCTTTAGGGAAAGATGTGAGATTTTCGCACCACATAACGTATACTACA
TGTACCACCACAGCCGCTGCCACCGCGTTGGCAGCACGTGGGGAGGGAGG
GAGGGAGGGCAGGAAGGAGGGAGGGAGAGGGAGGGCGTTTTTGGTCTCTG
GGTCGGAGGACTGCACAGTGAGGGTTTGGAGGGTGAGGGGGAAGGGAGGG
AGGGAGGGAGGGAGGGAGGCAGCGGGGAGTGTCGAAAATGTTACTGCGGC
ATTAAGAGGAGGAGGAGAGGGAGGAAGGGGAGGGGGAGGAGGAGAACCTG
TCTGTCCCGAGCCTTTGCATATTTTGAGGGGGCATGCAGAGGGTGTGACG
GCCGTGGCGGTGAGCGTTGCGCTGGACGTGGTGCTGTCAGGGGCGAGGGA
TGGGACTGTGTTGGTGCACTCTCTGCGAGACGGGAGGTATATACGGACAT
TGAGGAGAGGGGGAGGGAGGGAGGGAGGGCAAGGGAAGGGTGACAGTGGC
GCGGAGCTACCCCCGCTACTGATGTTGGGGTCGGTGCCGGTAGAAGAGGT
CGAGGTAGAGGAAGAGGGGAAGCAGGCATTGGAGGGACAGCACGAAAAGC
CGAAAAGGAGGGCAAGGCTTCCATGCTCCTCTTCCCCTCACTCCCCCCGC
GCCATCCACTGGGTTGGAATCTCCCCTGCCGGCTACCTCCTTTCCTACTC
CCGCTCATCCGGACTACTCACTTCGCACAGCCTGAACGGCCGGCTGCTCG
CCCGCGTGTCCTCGAGCCCTGCCTCCCTCTATGCCTTCACCTTCTCGGAG
GACGGAAACGTCGTCCTCCTGGGGGGGGATAACAAAAAAGTGCTCTTGTT
ATGGTGTCACTCCCTGCGACTCGCCTCGGATGGGGCAAGGCGGGGGTTGG
AAGGCCTGGCCGTTACCGATGGAGGGTGCGCGGATTTGTCCGTTACACCT
TTCCCGGCAACGGTCCGTTGCTTGGCGTTGACGGCGCATGAGAGGCATCT
ACTGGTGGGTCTAGAGAATGGCCAGGCGTATGTGTTAGCCCCTGAGGCGG
AATACTTGAGGACGCGCTTGAAGGTTAAGCTGGAGACGATGGGCTTTTAC
TAGGAAGGGAAGTGAGGGAAAGAGGATGTTGGAGGAAGGAGGATGGAACA
AGAAGGTTGACGAAGGGAGAAGAAGAGTAATTTAACGACAAGCGAATTAT
TCTTCGTGTAAGTAAGAGTATCATCGAAGATACAGACACAGAAATCAGAG
CCGAAAGTGTGTCGAGCCAGGTACGACAGGAGAATTCGATGCCAATTAAT
AGTGTACATACACACACACACTCCAAGAAACCTCAAACAGCATAATCGTT
AAAATAGCAACATAAACCGTGCATAGGGAAAAAAATTTAAGATAGGCTCG
TGTGAAATCAAGAGGGAGGGGCGAAACGAAAGGGAAGCGGCCGCAGTGTT
CTTAGTCTCTTTCTCGGAAGGCAGAACACCTCCCTCTCCTCCTCATCATT
CCTTTTCTTCTTCTATCTTTTAGTCATTCGATTTCCATCTTCTATATTTC
GCCCTTTCGCGCGCTTTCTCTCTCTCCATCCCAAAAGATAACAAAAGATG
CACTCGCTAATCATAATTTCACATGGAGTGTTTGCTTCATTGAGTGTAGA
GAACTAATTTCGCTCTCCCTTACTCTCTGTGTCTCACGCACACTCCCTCC
CTTTCTCTCTCGC

Coding sequence (CDS) from alignment at scaffold_10:869557..875919-

>mRNA_4538 ID=mRNA_4538|Name=jgi.p|Nanoce1779_2|26589|organism=Nannochloropsis oceanica|type=CDS|length=5523bp|location=Sequence derived from alignment at scaffold_10:869557..875919- (Nannochloropsis oceanica)
ATGCAAGGACTCCTTCCTCCTCCATTCGCACCAGGCGACGAGGACCATAG
CAAAGCAGCTCCTTCCTTCGATTGGGAGGAGGCACGCGTGACGGAAGTCT
TTTTTATCATGGGCCACGCATTCCTCCGCGATGATGTTCCAGTCGTAGCG
AAAAAGCTGGCAGCGGAGATGCTCTGGTCAGTAGCCACTTCCTCCTTCCC
TTCCTTGTCCTCGTCCTCGTTGTTTTGGCCTCTCGAAAGCAGAGAATGTC
GGTCTCATTTAGAGCTGCCTTTTTGGTTTGAGAGATTGGCAAGCGAGGAT
GAGGAGGAGAAGCCCAGCAGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAG
TAACATTGAAAATAGTGGTAGAAATATGATCGCTTTCCGAGCGGTCATTC
CCGCGCTTTTACTGCTGGACGAGCATATTAGAGAAGGTGAGGAGAAGGAG
AGACAAAAAAGTAGCAGCAGCAGCAGTGGGGCATGCAAAGCCTTTATTGC
GACCGTAGCGACAGCAACAGCAGCAACAACAGCAGCAGCAACAACAACAA
CGGTTGACCGCATCACGTACAAGGAAGAGGGAATACTCGAAGATGCTGTC
CTTGCACTTGAGAGGCTGAAGACTACCTTCCTGTCTCCTCTCATTGTCCC
TCATGCGCCTCCTACCTCTACATCTGTCAGTACTCCACTGCCGCTGGTGC
AGCGGCTTCAAAGTCGCTTGCTTACCGTCTTCCAGCACCGGCAACGACAG
GGTCTGGCTCGGTTAAAAGACACGCTTAGAGCGTACAGAGAAGAGGAGAT
ATGGACATGGCGACGGTGTTACAGCTTTTTGTTGGGAGAGGAGGAAGTCG
TCGGGGGGGAGGGAGGGCCGTGGGGCGCAGAGATCTGCCGGAACGCGTTT
ATACGATGGATGAAAGAGAAGCGGAGAGTGAGAGGCGGACGGTTCGTTGC
TGACGGTGGGGGGAAGGGTAAGGAGCAGGAGGATGAGGAGGAAGGGGGGG
AGGTTGTATCGTGGATGGTGGATGATGCAGAGGATCATCTCAGGCATCGA
TGGAAGCTCGTTAGAAGACCATGGGCGACTGTATGGGTGCCTCCATCACC
AGCAGCAGCAGCAGCAGTAGCTGCAGCCATGACAGCATCAGGAGGGGCAG
AGGTGGAGCGAGAGGATTTAGAGGAGGAAGAGGAGGAGGACGTGGCGGCG
TTGCTGCGGCACGCTCAGGCACCACTGAGGGGGGGCGGGAGGAAAGGGAG
AGGATCTACTGTTTGTAGTGATGCTGAAGCTGGAGTTGGGACGGTTACAG
CAGCAGCAACAGTAGACGAAGAGGAGATGAAACTAAAGCTCCCGATATTG
CCGTTGTTGGTTAAGTCCCAGGAGGAGGAAAGTGAGATGGAGCAGCAACA
GCAGCAACAGCAACAGGAGAGGGAGTGGGAGAAGACTAAGGAGAGGAGGG
AGGATGTGGTTGATTTGTCGCAAACAGTTCTTTGGAAGGAGCTGGCCAAA
TACCAGAAGAGGGAGGAGGAAGGGGAGGAGGAAGAGGAGGAGGAGGATGA
TGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGCAGC
AGGAGGGTGAGGAGGAGAAGGAGCAACAGCAGCAGCGTCAGTGTTCTGAC
GCTGGGTCCAGCATTACGAGCACAAGCGAGGTCTGTATTGGAAAGCCGCA
GATCGCGGAGGAAGAAGGGAAGGCGAAGAAATTGGAGAAGGTGAAGGAGG
AAGAGCAAGCGCGGGAAGAGGATGTGGGGGTGGTCGTCCCTTCTGCCCCG
ACTACTGCGCCGACGGGTTGTTCAAAGGTCGGCCAACCCAGCTCGGCAAA
CTCTATTGCTCCCGGAGGCGACAGAATCACGGCGGCAATAGAAGGAGGAA
GGGGAGGAGGAGGAGGACGAGGAGGAAGGGGATGGGAACGAGCGCAACGG
ACGAGGGTGACGTTGCTGGCAGGGCCGTGGCAATCCAGAGGATGGGGGGC
TCGGAGCTCTATCCCCTTCGACCATATCCTTGCCTCTCCCTCCCCCCATT
TGTCCTCCACCCTGCCCCCCCCTTCCTCCCACGTCCTTCCCGATGCAGCC
CGTCGTTTGCGGACCACGACCAGAAGCGGGTTTCTCGGCGGAGAGGACAA
AATAAGAGCAGGAAGAGGAGGAGGTGGAAAAGGAGCTGGGGGATGGTTAC
CGGAAGGCAAGATAGACGAGGCTGTGTTTGGAGCGATCAAGGAGTCGCAG
CCCTGCGAAGTCATCCGTCCCTGTGGAGCTTCTCCGGGTATCTTTCAAGT
CACCACCCGCTGCCTTCGCTTCCTCCTCTACCCCACTCCCCCTTCCTCCC
TCCCCCCTCCCCACGCTGTCGACGGGGGACGGACAAGCACACGCTGGTCT
CTCCTCCCTTACCCCTCCACCCTCTTCCTCCTCTCTGACCTCCATGCTCT
CTACCTCCGCCGCCACCAACAGCAAGATTCCTTGGCCCTCGAATTTTTCT
TCCTGGACCGCTCGACCCTCTTCCTCACCTTTTCCTCCAAGCCAATCACC
CTCGGGATCTACAAGGCCATCCGCAAGCTCCACAGCCCGTCTCTCGAACC
CCATCTCGGGCACACCCCTCGGCAATTGCTCGCTCGCTTCAAAACCTCGC
AAAACCACTCCCTGACACAAGCGTGGGTCAATCGTGAAATATCAAATTTT
GAATACTTGAGCAAATTGAACTTGTTGGCGGGAAGGACGGTGAATGATTT
GTCGCAATACCCTGTGTTTCCGTGGGTGTTAGCTGACTACACGTCGGATA
CGTTGGAGTTGGACGAGAGGAGGAGCTTTCGGGATTTACGGTGGCCGATG
GGAGCGCAGAGGGAGGAGGCAAGGGAGGCATTGAGAAGGACATATGCGAT
GTTGGAGGAGGTATACTTGAATGAGGCGAGGGAGGGAGGGAGGGAAGGGG
AGGCGGTGGATTCGATACCGCCGTTTCAACATGGCTCCCATTATTCCACG
GCGGCGTTTGTGGCGTGGTACTTGGTCAGAGTCGAGCCATTCACCTCCTT
CCACCTCCACTTGCAAGGAGGAAAATTCGACCTTCCCGACCGGCAGTTCC
GGTCCCTCCACGCCGCCTACCAAGGGTGCGTGACGAACCCGTCGGACGTA
AAGGAATTAATTCCTGAGTTCTTTTACCTCCCTGATTTCCTGCGTAATGT
GAACAAGGTATATCTAGGACGGACTCAGAGAGGGGAGGAGGTGGGGGACG
TGGAGCTGCCGCCATGGGCAGGGGGCACGGCGGAAGAGTTTGTGAGGCTG
CACAGGGAGGCCTTGGAGAGCGAGTGTGTGAGCGAGATGTTGCATCACTG
GATAGACCTAATATTTGGGTGCAAGCAGCGACCACCGTACCTCCCACTTT
CCTCCTCCTCCTCGTCTGCCTCCTCCGCCTTGGTAAACGCTGTACGGAGG
GGCAGCAATGCTGTCAGTGGTGCGAAAGAAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGCAACAGCAGCAGCACCAGCTGTGGCGG
CGTGCAACGTTTTTTTCAACCTCACCTACCACGACGCCATCGACCTGCCC
GCTTTGAAAGCTGATGACCCAGTGCTCTACGAGGCCACCTTAAGGCAGAT
TCAGGATTTTGGCCAAACCCCTTGCCAGCTCTTTCTCACCCCTCACCCGC
CCCGTGCGCTCCTCCACCAAGCGTCGGAGCTGATATGGCCCATAGCCAGC
GTTGTTCCCGGGGCTGGCACCTCCCTCCCTCCCTCGTCCTCGTCCTCGTC
CTCGTCCACTTCGGCAGACACGGACATGGAAAAAGCGGGGCTGGAGATCC
CCTCCTCCCTCGACTCCTCCGCCCTTGCCTCCCCCCCCTCCGCCTCCGCC
TCCTCCTCCCCCTCCTCCTCCTCCTCCCTCGCCCCCCTCACAGGCAGAAA
CGTTGTCTCTGGACCTTCATTACCCAAACCCGAACGCTTTCTCTCCTTTC
CCCCCTCCCTCCTGTCCTCCTCTCCAACTTCCCCCCTCTTGCTCTGTGTG
GAAAGGGGAGGATGCGACCGTCTCGTCTCGGTAGATGGGAGATCGCACGT
CCGCTGGCACGGCTGGTGTGTGCTGAGCCCTGATGTTGTCCCTCCCTTTA
AGTTGAAGCCTGACCCACGAGGCGGAGGGAGGGAGGCAGGGCGGGAAAGA
GGAAAGGAGGAGGTAGCGTTGGATGCGGAGACGGGGTTGCTCTTTACGTG
CGGGTATGTAGATTGTTCATTCAAGGTGGCTGCAGTGGAAGACCCTTACT
CCTCCTCGACCTCAGACGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGGCGGCGGCGAATTGATACAGTCTGTGGGAGGCCA
TGCGGACATTGTGCGGTGTCTTGCTTTAGGGAAAGATGTGAGATTTTCGC
ACCACATAACGTATACTACATGTACCACCACAGCCGCTGCCACCGCGTTG
GCAGCACGTGGGGAGGGAGGGAGGGAGGGCAGGAAGGAGGGAGGGAGAGG
GAGGGCGTTTTTGGTCTCTGGGTCGGAGGACTGCACAGTGAGGGTTTGGA
GGGTGAGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGCGGGGAGT
GTCGAAAATGTTACTGCGGCATTAAGAGGAGGAGGAGAGGGAGGAAGGGG
AGGGGGAGGAGGAGAACCTGTCTGTCCCGAGCCTTTGCATATTTTGAGGG
GGCATGCAGAGGGTGTGACGGCCGTGGCGGTGAGCGTTGCGCTGGACGTG
GTGCTGTCAGGGGCGAGGGATGGGACTGTGTTGGTGCACTCTCTGCGAGA
CGGGAGGTATATACGGACATTGAGGAGAGGGGGAGGGAGGGAGGGAGGGC
AAGGGAAGGGTGACAGTGGCGCGGAGCTACCCCCGCTACTGATGTTGGGG
TCGGTGCCGGTAGAAGAGGTCGAGGTAGAGGAAGAGGGGAAGCAGGCATT
GGAGGGACAGCACGAAAAGCCGAAAAGGAGGGCAAGGCTTCCATGCTCCT
CTTCCCCTCACTCCCCCCGCGCCATCCACTGGGTTGGAATCTCCCCTGCC
GGCTACCTCCTTTCCTACTCCCGCTCATCCGGACTACTCACTTCGCACAG
CCTGAACGGCCGGCTGCTCGCCCGCGTGTCCTCGAGCCCTGCCTCCCTCT
ATGCCTTCACCTTCTCGGAGGACGGAAACGTCGTCCTCCTGGGGGGGGAT
AACAAAAAAGTGCTCTTGTTATGGTGTCACTCCCTGCGACTCGCCTCGGA
TGGGGCAAGGCGGGGGTTGGAAGGCCTGGCCGTTACCGATGGAGGGTGCG
CGGATTTGTCCGTTACACCTTTCCCGGCAACGGTCCGTTGCTTGGCGTTG
ACGGCGCATGAGAGGCATCTACTGGTGGGTCTAGAGAATGGCCAGGCGTA
TGTGTTAGCCCCTGAGGCGGAATACTTGAGGACGCGCTTGAAGGTTAAGC
TGGAGACGATGGGCTTTTACTAG

Synonyms

Publications