jgi.p|Nanoce1779_2|589488, mRNA_4537 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589488
Unique NamemRNA_4537
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length697
Alignment locationscaffold_10:868671..869855 +

Link to JBrowse

Properties
Property NameValue
TranscriptId589574
TrackFilteredModels2
ProteinId589488
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:868671..869855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589488gene_4537Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589488mRNA_4537-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4537CDS_4537Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4537 ID=mRNA_4537|Name=jgi.p|Nanoce1779_2|589488|organism=Nannochloropsis oceanica|type=mRNA|length=697bp
CAGACAACACCACCACCACCAAACGCCCAAGCATCAACTATCATGCTCAG
CCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCAACAAACACGCGCCA
ATGCCACACGCATGGCCACCTCTATCCGACACAAGGGAACAGCACCGCTG
CAGTCACACTACGGCGGGAAGCCGAAGGGATTTAAGGAGACCTGGCTGAT
GGACGGCGCAACCTATCCCATCATCGTCATCATCACATTCGCCGTCACCA
TGTGCAGCAGTTTCACGGCTTATAAATTCTTCAATTCGCCTGACAACCGC
GTCGATCCCCGCAAGCGCTCGACCCTCCTTCGTGACTGGACCAAATAGAG
CCGAACAGACAAAATGAAGGAAAAGAGAGCGAGAAACATCAAGAAAGAGC
GAGAGAGAAAGGGAGGGAGTGTGCGTGAGACACAGAGAGTAAGGGAGAGC
GAAATTAGTTCTCTACACTCAATGAAGCAAACACTCCATGTGAAATTATG
ATTAGCGAGTGCATCTTTTGTTATCTTTTGGGATGGAGAGAGAGAAAGCG
CGCGAAAGGGCGAAATATAGAAGATGGAAATCGAATGACTAAAAGATAGA
AGAAGAAAAGGAATGATGAGGAGGAGAGGGAGGTGTTCTGCCTTCCGAGA
AAGAGACTAAGAACACTGCGGCCGCTTCCCTTTCGTTTCGCCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|589488

>mRNA_4537-protein ID=mRNA_4537-protein|Name=jgi.p|Nanoce1779_2|589488|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MLSRVFTSAMRPAVQQTRANATRMATSIRHKGTAPLQSHYGGKPKGFKET
WLMDGATYPIIVIITFAVTMCSSFTAYKFFNSPDNRVDPRKRSTLLRDWT
K*
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mRNA from alignment at scaffold_10:868671..869855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4537 ID=mRNA_4537|Name=jgi.p|Nanoce1779_2|589488|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_10:868671..869855+ (Nannochloropsis oceanica)
CAGACAACACCACCACCACCAAACGCCCAAGCATCAACTATCATGCTCAG
CCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCAACAAACACGCGCCA
ATGCCACACGGTAAGACTCGAGCGAGGCAGTACGAATATGTCCCGCCATA
TGGTGGCTGATTCACGTCCCCCCACACATCCTAACCTCTCTACACCCCAG
CATGGCCACCTCTATCCGACACAAGGGAACAGCACCGCTGCAGTCACACT
ACGGCGGGAAGCCGAAGGGATTTAAGGAGGTAAGGGATGTTGACAATGGT
TGGTGGATGGATAGGGAGGCGATGAGGGCACAGGGTGGGGGGGGTGGAAT
CTCTTGGTCCTAGCGCACGAGTCGTCCCTTCCTCTCTCCTCTGGCAAGGG
GACTGGAGACTGATGGCCGCATCAAGCTGTGTATGACTCAGGCGCTTTCT
CTTATCTTACCCTCCCTCCCTCCCTCCCTTTCTCCCTCCCTAATACTCCT
CCTCCTTTTAGACCTGGCTGATGGACGGCGCAACCTATCCCATCATCGTC
ATCATCACATTCGCCGTCACCATGTGCAGCAGTTTCACGGCGTAAGTGTG
TGTGTATTTGTGTGTGTGTTCCCATGAAAGAAATCGGTAGACTGGTGTAA
GGGCCGGCCTTTCAACTCCCTCCCCTCCCCTTCATTCCTCCTTCATGTCC
TCCTCTTATTGCCCTCTCTCTCCTTTCCTCCGTCCGTCGCTCCCTCCATT
AAAATAGTTATAAATTCTTCAATTCGCCTGACAACCGCGTCGATCCCCGC
AAGCGCTCGACCCTCCTTCGTGACTGGACCAAATAGAGCCGAACAGACAA
AATGAAGGAAAAGAGAGCGAGAAACATCAAGAAAGAGCGAGAGAGAAAGG
GAGGGAGTGTGCGTGAGACACAGAGAGTAAGGGAGAGCGAAATTAGTTCT
CTACACTCAATGAAGCAAACACTCCATGTGAAATTATGATTAGCGAGTGC
ATCTTTTGTTATCTTTTGGGATGGAGAGAGAGAAAGCGCGCGAAAGGGCG
AAATATAGAAGATGGAAATCGAATGACTAAAAGATAGAAGAAGAAAAGGA
ATGATGAGGAGGAGAGGGAGGTGTTCTGCCTTCCGAGAAAGAGACTAAGA
ACACTGCGGCCGCTTCCCTTTCGTTTCGCCCCTCC
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Coding sequence (CDS) from alignment at scaffold_10:868671..869855+

>mRNA_4537 ID=mRNA_4537|Name=jgi.p|Nanoce1779_2|589488|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_10:868671..869855+ (Nannochloropsis oceanica)
ATGCTCAGCCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCAACAAAC
ACGCGCCAATGCCACACGCATGGCCACCTCTATCCGACACAAGGGAACAG
CACCGCTGCAGTCACACTACGGCGGGAAGCCGAAGGGATTTAAGGAGACC
TGGCTGATGGACGGCGCAACCTATCCCATCATCGTCATCATCACATTCGC
CGTCACCATGTGCAGCAGTTTCACGGCTTATAAATTCTTCAATTCGCCTG
ACAACCGCGTCGATCCCCGCAAGCGCTCGACCCTCCTTCGTGACTGGACC
AAATAGATGCTCAGCCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCA
ACAAACACGCGCCAATGCCACACGCATGGCCACCTCTATCCGACACAAGG
GAACAGCACCGCTGCAGTCACACTACGGCGGGAAGCCGAAGGGATTTAAG
GAGACCTGGCTGATGGACGGCGCAACCTATCCCATCATCGTCATCATCAC
ATTCGCCGTCACCATGTGCAGCAGTTTCACGGCTTATAAATTCTTCAATT
CGCCTGACAACCGCGTCGATCCCCGCAAGCGCTCGACCCTCCTTCGTGAC
TGGACCAAATAGATGCTCAGCCGCGTCTTCACCTCGGCCATGCGCCCCGC
TGTCCAACAAACACGCGCCAATGCCACACGCATGGCCACCTCTATCCGAC
ACAAGGGAACAGCACCGCTGCAGTCACACTACGGCGGGAAGCCGAAGGGA
TTTAAGGAGACCTGGCTGATGGACGGCGCAACCTATCCCATCATCGTCAT
CATCACATTCGCCGTCACCATGTGCAGCAGTTTCACGGCTTATAAATTCT
TCAATTCGCCTGACAACCGCGTCGATCCCCGCAAGCGCTCGACCCTCCTT
CGTGACTGGACCAAATAGATGCTCAGCCGCGTCTTCACCTCGGCCATGCG
CCCCGCTGTCCAACAAACACGCGCCAATGCCACACGCATGGCCACCTCTA
TCCGACACAAGGGAACAGCACCGCTGCAGTCACACTACGGCGGGAAGCCG
AAGGGATTTAAGGAGACCTGGCTGATGGACGGCGCAACCTATCCCATCAT
CGTCATCATCACATTCGCCGTCACCATGTGCAGCAGTTTCACGGCTTATA
AATTCTTCAATTCGCCTGACAACCGCGTCGATCCCCGCAAGCGCTCGACC
CTCCTTCGTGACTGGACCAAATAG
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Synonyms
Publications