jgi.p|Nanoce1779_2|589468, mRNA_4534 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589468
Unique NamemRNA_4534
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length504
Alignment locationscaffold_10:849229..849732 +

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Properties
Property NameValue
TranscriptId589554
TrackFilteredModels2
ProteinId589468
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:849229..849732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589468gene_4534Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589468mRNA_4534-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4534CDS_4534Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4534 ID=mRNA_4534|Name=jgi.p|Nanoce1779_2|589468|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
GTCGCAAGACACCATATGCCGTTTGAATGGTTTGGCGTGCGCTGTAAACT
TTATCTTCTTTTTCTCCCTCTTCTTCTCCTCGTTCATCTCATGGTGTTGA
TGGCGGTGGTGATCTTCGTGATCCCTCTTCTTGTAGTCTTCTTGCCATCG
CCTTCTCATGACCACCCCCTCGGAGCAAGTAAAATTAAAATAAGGCATGC
ACATGCATCACCGGCACCACAACAGCGATTCAACCGACTCCTCCTTTCCT
CTCAACGTCAATCTCAAATCAAGCGCATTCTCTGTCCTCATCCTCTCTTG
CCGCAGCTGCTAATGCTACTGCTGCAAATGCCGATGCTGCTGCTGTTCCT
CTACCGAATACGCGTCCAAAGTAATTAAAATTAACAAATGCCATCCCCCC
CATTAACCCACCCTTTTTTTCCTCTCTTTCTGACACGTAGCACACATAAG
AACACATACGCGGAGGAGAGAGCGAGAAAGGAAGACACACAAATCTTCCC
CCCT
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protein sequence of jgi.p|Nanoce1779_2|589468

>mRNA_4534-protein ID=mRNA_4534-protein|Name=jgi.p|Nanoce1779_2|589468|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MPFEWFGVRCKLYLLFLPLLLLVHLMVLMAVVIFVIPLLVVFLPSPSHDH
PLGASKIKIRHAHASPAPQQRFNRLLLSSQRQSQIKRILCPHPLLPQLLM
LLLQMPMLLLFLYRIRVQSN*
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mRNA from alignment at scaffold_10:849229..849732+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4534 ID=mRNA_4534|Name=jgi.p|Nanoce1779_2|589468|organism=Nannochloropsis oceanica|type=mRNA|length=504bp|location=Sequence derived from alignment at scaffold_10:849229..849732+ (Nannochloropsis oceanica)
GTCGCAAGACACCATATGCCGTTTGAATGGTTTGGCGTGCGCTGTAAACT
TTATCTTCTTTTTCTCCCTCTTCTTCTCCTCGTTCATCTCATGGTGTTGA
TGGCGGTGGTGATCTTCGTGATCCCTCTTCTTGTAGTCTTCTTGCCATCG
CCTTCTCATGACCACCCCCTCGGAGCAAGTAAAATTAAAATAAGGCATGC
ACATGCATCACCGGCACCACAACAGCGATTCAACCGACTCCTCCTTTCCT
CTCAACGTCAATCTCAAATCAAGCGCATTCTCTGTCCTCATCCTCTCTTG
CCGCAGCTGCTAATGCTACTGCTGCAAATGCCGATGCTGCTGCTGTTCCT
CTACCGAATACGCGTCCAAAGTAATTAAAATTAACAAATGCCATCCCCCC
CATTAACCCACCCTTTTTTTCCTCTCTTTCTGACACGTAGCACACATAAG
AACACATACGCGGAGGAGAGAGCGAGAAAGGAAGACACACAAATCTTCCC
CCCT
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Coding sequence (CDS) from alignment at scaffold_10:849229..849732+

>mRNA_4534 ID=mRNA_4534|Name=jgi.p|Nanoce1779_2|589468|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_10:849229..849732+ (Nannochloropsis oceanica)
ATGCCGTTTGAATGGTTTGGCGTGCGCTGTAAACTTTATCTTCTTTTTCT
CCCTCTTCTTCTCCTCGTTCATCTCATGGTGTTGATGGCGGTGGTGATCT
TCGTGATCCCTCTTCTTGTAGTCTTCTTGCCATCGCCTTCTCATGACCAC
CCCCTCGGAGCAAGTAAAATTAAAATAAGGCATGCACATGCATCACCGGC
ACCACAACAGCGATTCAACCGACTCCTCCTTTCCTCTCAACGTCAATCTC
AAATCAAGCGCATTCTCTGTCCTCATCCTCTCTTGCCGCAGCTGCTAATG
CTACTGCTGCAAATGCCGATGCTGCTGCTGTTCCTCTACCGAATACGCGT
CCAAAGTAATTAA
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Synonyms
Publications