jgi.p|Nanoce1779_2|589465, mRNA_4533 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589465
Unique NamemRNA_4533
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length433
Alignment locationscaffold_10:847548..848507 +

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Properties
Property NameValue
TranscriptId589551
TrackFilteredModels2
ProteinId589465
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:847548..848507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589465gene_4533Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589465mRNA_4533-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4533CDS_4533Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4533 ID=mRNA_4533|Name=jgi.p|Nanoce1779_2|589465|organism=Nannochloropsis oceanica|type=mRNA|length=433bp
ACAGGGGACGGGGTAGAGGAGATGGGGACGAACCGCCCAAGAAGCGACGT
GCCCGGCCAGGCATGAGAGCGCTCCGTGAAATCAGACAATACCAACGCAC
CACCGAGCTGCTGCTGCGACGGCTGCCCTTCGCAAGACTTGTCCGCGAGG
TGCAGGGAGAGATCAGTACGAAGCAATACCGTTGGCAAGCCAACTCGCTA
CTGGCGCTGCAGGAGGCGGCCGAAGCCCACCTGGTGCATTTGTTCGAGGA
CGCGAATCTGTGTGCGATTCATGCGAAGAGAGTGACTATTATGCCAAAAG
ACATGCAACTAGCGAGGAGGATCCGTGGGCCCTTGAGGGAGTAGCTCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCTCCTTCTGTGCATGTGCCCCT
TTGACCTTCCCTGCCATCATCATCCTCCTCCTC
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protein sequence of jgi.p|Nanoce1779_2|589465

>mRNA_4533-protein ID=mRNA_4533-protein|Name=jgi.p|Nanoce1779_2|589465|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQ
EAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE*
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mRNA from alignment at scaffold_10:847548..848507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4533 ID=mRNA_4533|Name=jgi.p|Nanoce1779_2|589465|organism=Nannochloropsis oceanica|type=mRNA|length=960bp|location=Sequence derived from alignment at scaffold_10:847548..848507+ (Nannochloropsis oceanica)
ACAGGGGACGGGGTAGAGGAGGTGAGTTTGGGGTAGGGAGCAGGTTTTTC
CTGGAATGAGTGATGGAATCGAGAGCAGGGGAGAACGCTTTGCGTGGGTG
CGTGCATCAACAGTAGCAGCAGCACTTGTACTAGTAGTGTGTGGACAGTT
TGGCCTTGATAATGGATTTCGTTACATGTGGTGTGCGAGCACTAGTACCA
CCACGGGCCAGCGGCAGGTCTTTTGAAGTATGTATTATGTTATGTTACGG
TGCGTTAACACAGCACCTTTTTATCCAAGTTCATTCTTCTTACCGGATAG
AAATAAGAGAGCGGCACATAAATGCAGATAGATGTCATTTGCCCGTCCTC
ACGCACGTTTCCCTCCCCCTCTCCCTCCCTTCCTTCCTTCCTTCCTTCCT
CCTGTAAAGATGGGGACGAACCGCCCAAGAAGCGACGTGCCCGGCCAGGC
ATGAGAGCGCTCCGTGAAATCAGACAATACCAACGCACCACCGAGCTGCT
GCTGCGACGGCTGCCCTTCGCAAGACTTGTCCGCGAGGTGCAGGGAGAGA
TCAGTACGAAGCAATACCGTTGGCAAGCCAACTCGCTACTGGCGCTGCAG
GAGGCGGCCGAAGCCCACCTGGTGCATTTGTTCGAGGACGCGAATCTGTG
TGCGATTCATGCGAAGAGGCAAGGAGAGGAGAGGACCAAAGGAGGGAGGG
ATGGATGGGCGTGTGGGTGTGATGAGCTTTGCCTGTCTGTGCACACCGAA
TCGACTCATTTTTATTCACAAGTACCCCTTGCAACACCCTCCGTTCCACA
CACACAGAGTGACTATTATGCCAAAAGACATGCAACTAGCGAGGAGGATC
CGTGGGCCCTTGAGGGAGTAGCTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTCTCCTTCTGTGCATGTGCCCCTTTGACCTTCCCTGCCATCATCAT
CCTCCTCCTC
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Coding sequence (CDS) from alignment at scaffold_10:847548..848507+

>mRNA_4533 ID=mRNA_4533|Name=jgi.p|Nanoce1779_2|589465|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_10:847548..848507+ (Nannochloropsis oceanica)
ATGAGAGCGCTCCGTGAAATCAGACAATACCAACGCACCACCGAGCTGCT
GCTGCGACGGCTGCCCTTCGCAAGACTTGTCCGCGAGGTGCAGGGAGAGA
TCAGTACGAAGCAATACCGTTGGCAAGCCAACTCGCTACTGGCGCTGCAG
GAGGCGGCCGAAGCCCACCTGGTGCATTTGTTCGAGGACGCGAATCTGTG
TGCGATTCATGCGAAGAGAGTGACTATTATGCCAAAAGACATGCAACTAG
CGAGGAGGATCCGTGGGCCCTTGAGGGAGTAGATGAGAGCGCTCCGTGAA
ATCAGACAATACCAACGCACCACCGAGCTGCTGCTGCGACGGCTGCCCTT
CGCAAGACTTGTCCGCGAGGTGCAGGGAGAGATCAGTACGAAGCAATACC
GTTGGCAAGCCAACTCGCTACTGGCGCTGCAGGAGGCGGCCGAAGCCCAC
CTGGTGCATTTGTTCGAGGACGCGAATCTGTGTGCGATTCATGCGAAGAG
AGTGACTATTATGCCAAAAGACATGCAACTAGCGAGGAGGATCCGTGGGC
CCTTGAGGGAGTAG
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Synonyms
Publications