jgi.p|Nanoce1779_2|26557, mRNA_4532 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|26557
Unique NamemRNA_4532
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length939
Alignment locationscaffold_10:846221..847159 -

Link to JBrowse

Properties
Property NameValue
TranscriptId26643
TrackFilteredModels2
ProteinId26557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:846221..847159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|26557gene_4532Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|26557mRNA_4532-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4532CDS_4532Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4532 ID=mRNA_4532|Name=jgi.p|Nanoce1779_2|26557|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
CAACCGACACGCTGTCTATCACCCCCTGTCGTCGTCTGATATGAGCGCGT
GGGCACGGCCTGTTCGAAAGTAGGGTGTGCGTGCGGTGAGTGCGGGTAAA
TTGTGAGTGGCGTACAAGAGAAGAGACCAAAGTGGAGGGAAAATGACAAG
TATGGGAAATGGCGCGTATCGAAAGCATCGACCTCCTCCCTCCCTGCTCC
AACGTCACAACCTCCACACACGGACATAGGCGCGCTGAAAGCATGCTGAA
GGGCAGGGATACCGAGGACAGGGAATGGGTGGTTGGCCAAATGGTCCGCG
TCCGCTCATCGCTTAGCCCTGGTGCGCCGACATGCCGCGCGACCATCCTC
ACTGTTGGCGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAACA
ACAACAGCAGCGGCGGCACCGTGGACGTGCTGTACGAGGACGGCGTGGAA
TGGGCAGATGGAAAAGAGGAGGAAGCAAACGTGAACGTGGAGCGGCTGGA
GCGGCTGCAGCCTTACGAAGAGGCAGATGGAGGAGGAGGAAAGGAGGTAA
GAGCAGCTGCGGCAGCAGTAGAGCCGACAAAGCAGGGAGAGCGTGAGACG
GGACAAACATTACGGGAACAAGGGAATGAGTTGTTTATGACGCACAAGGA
CTATGGCGCGGCTTTGGGGTGCTATGCGAGGGCAATGGAGGAGTTGGCCC
CGCGAGAGGGAAAGGGAGCACTGCGGATTGGTGCGTGCTTACGAGGGGAT
TAGAAAAGAGAGAAGAGGGATACGATGGGATGAGGATGTATGCGTGTGTG
TATGTTGTCGGGAGGAATCCAATGACTTAAGTTAGGCGTGTGGAGCTCAG
GTTGCATTTGTGGCTAGAAGAGGCGTGAAAGAGAAAGAA
back to top

protein sequence of jgi.p|Nanoce1779_2|26557

>mRNA_4532-protein ID=mRNA_4532-protein|Name=jgi.p|Nanoce1779_2|26557|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MARIESIDLLPPCSNVTTSTHGHRRAESMLKGRDTEDREWVVGQMVRVRS
SLSPGAPTCRATILTVGESSSSSSSSSSSSSSSSSSSSSSSSSSGSNNNS
SGGTVDVLYEDGVEWADGKEEEANVNVERLERLQPYEEADGGGGKEVRAA
AAAVEPTKQGERETGQTLREQGNELFMTHKDYGAALGCYARAMEELAPRE
GKGALRIGACLRGD*
back to top

mRNA from alignment at scaffold_10:846221..847159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4532 ID=mRNA_4532|Name=jgi.p|Nanoce1779_2|26557|organism=Nannochloropsis oceanica|type=mRNA|length=939bp|location=Sequence derived from alignment at scaffold_10:846221..847159- (Nannochloropsis oceanica)
CAACCGACACGCTGTCTATCACCCCCTGTCGTCGTCTGATATGAGCGCGT
GGGCACGGCCTGTTCGAAAGTAGGGTGTGCGTGCGGTGAGTGCGGGTAAA
TTGTGAGTGGCGTACAAGAGAAGAGACCAAAGTGGAGGGAAAATGACAAG
TATGGGAAATGGCGCGTATCGAAAGCATCGACCTCCTCCCTCCCTGCTCC
AACGTCACAACCTCCACACACGGACATAGGCGCGCTGAAAGCATGCTGAA
GGGCAGGGATACCGAGGACAGGGAATGGGTGGTTGGCCAAATGGTCCGCG
TCCGCTCATCGCTTAGCCCTGGTGCGCCGACATGCCGCGCGACCATCCTC
ACTGTTGGCGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAACA
ACAACAGCAGCGGCGGCACCGTGGACGTGCTGTACGAGGACGGCGTGGAA
TGGGCAGATGGAAAAGAGGAGGAAGCAAACGTGAACGTGGAGCGGCTGGA
GCGGCTGCAGCCTTACGAAGAGGCAGATGGAGGAGGAGGAAAGGAGGTAA
GAGCAGCTGCGGCAGCAGTAGAGCCGACAAAGCAGGGAGAGCGTGAGACG
GGACAAACATTACGGGAACAAGGGAATGAGTTGTTTATGACGCACAAGGA
CTATGGCGCGGCTTTGGGGTGCTATGCGAGGGCAATGGAGGAGTTGGCCC
CGCGAGAGGGAAAGGGAGCACTGCGGATTGGTGCGTGCTTACGAGGGGAT
TAGAAAAGAGAGAAGAGGGATACGATGGGATGAGGATGTATGCGTGTGTG
TATGTTGTCGGGAGGAATCCAATGACTTAAGTTAGGCGTGTGGAGCTCAG
GTTGCATTTGTGGCTAGAAGAGGCGTGAAAGAGAAAGAA
back to top

Coding sequence (CDS) from alignment at scaffold_10:846221..847159-

>mRNA_4532 ID=mRNA_4532|Name=jgi.p|Nanoce1779_2|26557|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_10:846221..847159- (Nannochloropsis oceanica)
ATGGCGCGTATCGAAAGCATCGACCTCCTCCCTCCCTGCTCCAACGTCAC
AACCTCCACACACGGACATAGGCGCGCTGAAAGCATGCTGAAGGGCAGGG
ATACCGAGGACAGGGAATGGGTGGTTGGCCAAATGGTCCGCGTCCGCTCA
TCGCTTAGCCCTGGTGCGCCGACATGCCGCGCGACCATCCTCACTGTTGG
CGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAACAACAACAGC
AGCGGCGGCACCGTGGACGTGCTGTACGAGGACGGCGTGGAATGGGCAGA
TGGAAAAGAGGAGGAAGCAAACGTGAACGTGGAGCGGCTGGAGCGGCTGC
AGCCTTACGAAGAGGCAGATGGAGGAGGAGGAAAGGAGGTAAGAGCAGCT
GCGGCAGCAGTAGAGCCGACAAAGCAGGGAGAGCGTGAGACGGGACAAAC
ATTACGGGAACAAGGGAATGAGTTGTTTATGACGCACAAGGACTATGGCG
CGGCTTTGGGGTGCTATGCGAGGGCAATGGAGGAGTTGGCCCCGCGAGAG
GGAAAGGGAGCACTGCGGATTGGTGCGTGCTTACGAGGGGATTAG
back to top
Synonyms
Publications