jgi.p|Nanoce1779_2|577361, mRNA_453 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577361
Unique NamemRNA_453
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1276
Alignment locationscaffold_3:1114775..1116050 +

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Properties
Property NameValue
TranscriptId577447
TrackFilteredModels2
ProteinId577361
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1114775..1116050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577361gene_453Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577361mRNA_453-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_453CDS_453Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_453 ID=mRNA_453|Name=jgi.p|Nanoce1779_2|577361|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp
ACAGATAAAGCGAAAATTGTGGGCTCTTCAGCGTCTGGCATACTGCCTCG
CGGTGGTCGGCCCGCCTGTGGGGAGGCAAGGGCACAGCTTCGTTCCTGCT
CTTAACCCCGGCCTCTTTCGTATCTTCCACTCCCGCGCCCACGACCAAGA
CCAGCACGTCCACGGGCCTACTTTGCGGCACAAAAGCAGTGGCTTCAGTG
CAGGGCTAGTACTTGCCACCATCGATCAAGATTCGCCAACTATAATCACC
CCCATGGCTAACTCCATGCGACTACCAAGCCCCTCCGCAACGCTTCAAGA
GGAAGAAGTCCTAATTTCTTCCAGCGACGACGTGCAGATTGCCGGCAAAA
TCAGTAATAAATTCAGTCCCGTTGCCGTCGTTATATCGCACCCCTACGGC
CCCCTGGGCGGGAACATGATGAATAACGTGGTATGGGCTATGACCCAGCA
CTTGTCTCGCTTTGGCTTCACAACGCTCCGTTTTAACTTTCGTGGCGTGG
CCCCTTCGACAGGCCGGACATCCTGGACGGGGGTAGGCGAGAAAGAGGAC
ATGCGAGCAGTGTGTGAGTATGCATTGACCCGTCTTGAGAGTCCCCCGCA
GAAATTATTGATTATTGGATACAGCTACGGGAGTGTGGTCGGCTCGGCGT
TGGGGGGAGAGATGTCCCAGGTGCATGCATATGCGGCGATTGCTTATCCT
TTTAGCGTGGCATTTGCATTGACGCTGTTTCGACAGCGGAGCTATTTTAC
ATTAGCGGCGAAGGGCGAGAAACCGAAGCTTTTTGTAATGGGGAGTCAGG
ACCAATTCACTGGGATGGGGACGTTCATGAGGAAGGTCAAGTTGCTGCCT
TCACCTACAGAAGTGGTGGCGATGGAGGGGGTGGATCACTTCTTCTTTGG
GAAAGAAAAGGCGTTGTGTGAAATTGTGCAGGTATGGCTGGAAAAAGTAA
CGGGCACGCATGATTTAAAAGCCTTTTTGACATCCGCTGCTGCTGCTGCT
GCTGCTGCTCCTGGTCCTGGTCCTGGTCCTGCTGCGGTCGCTATAGGAGG
GGAGGGCAGCAGCGATGGAGGAAAAAGAGGGAATAGCCAGAAAGAAAAGC
TACCAGAAGCGTGTGTGGACGGGAACCAGGAACTGTAAATTGAGTATTCG
TACGAGAAATTAAATAAAGGAGAGGCGTTGAACGCAAACATAGTACCCAT
ATGCATACACACAAAACGCGACCGCAGCCCTCTTCAAATCGTTATTAAAG
AGGAACAAAGATGATACCATTCAATG
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protein sequence of jgi.p|Nanoce1779_2|577361

>mRNA_453-protein ID=mRNA_453-protein|Name=jgi.p|Nanoce1779_2|577361|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MANSMRLPSPSATLQEEEVLISSSDDVQIAGKISNKFSPVAVVISHPYGP
LGGNMMNNVVWAMTQHLSRFGFTTLRFNFRGVAPSTGRTSWTGVGEKEDM
RAVCEYALTRLESPPQKLLIIGYSYGSVVGSALGGEMSQVHAYAAIAYPF
SVAFALTLFRQRSYFTLAAKGEKPKLFVMGSQDQFTGMGTFMRKVKLLPS
PTEVVAMEGVDHFFFGKEKALCEIVQVWLEKVTGTHDLKAFLTSAAAAAA
AAPGPGPGPAAVAIGGEGSSDGGKRGNSQKEKLPEACVDGNQEL*
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mRNA from alignment at scaffold_3:1114775..1116050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_453 ID=mRNA_453|Name=jgi.p|Nanoce1779_2|577361|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp|location=Sequence derived from alignment at scaffold_3:1114775..1116050+ (Nannochloropsis oceanica)
ACAGATAAAGCGAAAATTGTGGGCTCTTCAGCGTCTGGCATACTGCCTCG
CGGTGGTCGGCCCGCCTGTGGGGAGGCAAGGGCACAGCTTCGTTCCTGCT
CTTAACCCCGGCCTCTTTCGTATCTTCCACTCCCGCGCCCACGACCAAGA
CCAGCACGTCCACGGGCCTACTTTGCGGCACAAAAGCAGTGGCTTCAGTG
CAGGGCTAGTACTTGCCACCATCGATCAAGATTCGCCAACTATAATCACC
CCCATGGCTAACTCCATGCGACTACCAAGCCCCTCCGCAACGCTTCAAGA
GGAAGAAGTCCTAATTTCTTCCAGCGACGACGTGCAGATTGCCGGCAAAA
TCAGTAATAAATTCAGTCCCGTTGCCGTCGTTATATCGCACCCCTACGGC
CCCCTGGGCGGGAACATGATGAATAACGTGGTATGGGCTATGACCCAGCA
CTTGTCTCGCTTTGGCTTCACAACGCTCCGTTTTAACTTTCGTGGCGTGG
CCCCTTCGACAGGCCGGACATCCTGGACGGGGGTAGGCGAGAAAGAGGAC
ATGCGAGCAGTGTGTGAGTATGCATTGACCCGTCTTGAGAGTCCCCCGCA
GAAATTATTGATTATTGGATACAGCTACGGGAGTGTGGTCGGCTCGGCGT
TGGGGGGAGAGATGTCCCAGGTGCATGCATATGCGGCGATTGCTTATCCT
TTTAGCGTGGCATTTGCATTGACGCTGTTTCGACAGCGGAGCTATTTTAC
ATTAGCGGCGAAGGGCGAGAAACCGAAGCTTTTTGTAATGGGGAGTCAGG
ACCAATTCACTGGGATGGGGACGTTCATGAGGAAGGTCAAGTTGCTGCCT
TCACCTACAGAAGTGGTGGCGATGGAGGGGGTGGATCACTTCTTCTTTGG
GAAAGAAAAGGCGTTGTGTGAAATTGTGCAGGTATGGCTGGAAAAAGTAA
CGGGCACGCATGATTTAAAAGCCTTTTTGACATCCGCTGCTGCTGCTGCT
GCTGCTGCTCCTGGTCCTGGTCCTGGTCCTGCTGCGGTCGCTATAGGAGG
GGAGGGCAGCAGCGATGGAGGAAAAAGAGGGAATAGCCAGAAAGAAAAGC
TACCAGAAGCGTGTGTGGACGGGAACCAGGAACTGTAAATTGAGTATTCG
TACGAGAAATTAAATAAAGGAGAGGCGTTGAACGCAAACATAGTACCCAT
ATGCATACACACAAAACGCGACCGCAGCCCTCTTCAAATCGTTATTAAAG
AGGAACAAAGATGATACCATTCAATG
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Coding sequence (CDS) from alignment at scaffold_3:1114775..1116050+

>mRNA_453 ID=mRNA_453|Name=jgi.p|Nanoce1779_2|577361|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_3:1114775..1116050+ (Nannochloropsis oceanica)
ATGGCTAACTCCATGCGACTACCAAGCCCCTCCGCAACGCTTCAAGAGGA
AGAAGTCCTAATTTCTTCCAGCGACGACGTGCAGATTGCCGGCAAAATCA
GTAATAAATTCAGTCCCGTTGCCGTCGTTATATCGCACCCCTACGGCCCC
CTGGGCGGGAACATGATGAATAACGTGGTATGGGCTATGACCCAGCACTT
GTCTCGCTTTGGCTTCACAACGCTCCGTTTTAACTTTCGTGGCGTGGCCC
CTTCGACAGGCCGGACATCCTGGACGGGGGTAGGCGAGAAAGAGGACATG
CGAGCAGTGTGTGAGTATGCATTGACCCGTCTTGAGAGTCCCCCGCAGAA
ATTATTGATTATTGGATACAGCTACGGGAGTGTGGTCGGCTCGGCGTTGG
GGGGAGAGATGTCCCAGGTGCATGCATATGCGGCGATTGCTTATCCTTTT
AGCGTGGCATTTGCATTGACGCTGTTTCGACAGCGGAGCTATTTTACATT
AGCGGCGAAGGGCGAGAAACCGAAGCTTTTTGTAATGGGGAGTCAGGACC
AATTCACTGGGATGGGGACGTTCATGAGGAAGGTCAAGTTGCTGCCTTCA
CCTACAGAAGTGGTGGCGATGGAGGGGGTGGATCACTTCTTCTTTGGGAA
AGAAAAGGCGTTGTGTGAAATTGTGCAGGTATGGCTGGAAAAAGTAACGG
GCACGCATGATTTAAAAGCCTTTTTGACATCCGCTGCTGCTGCTGCTGCT
GCTGCTCCTGGTCCTGGTCCTGGTCCTGCTGCGGTCGCTATAGGAGGGGA
GGGCAGCAGCGATGGAGGAAAAAGAGGGAATAGCCAGAAAGAAAAGCTAC
CAGAAGCGTGTGTGGACGGGAACCAGGAACTGTAA
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Synonyms
Publications