|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 630473 |
| Track | FilteredModels2 |
| ProteinId | 630387 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:837615..839998 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4529 ID=mRNA_4529|Name=jgi.p|Nanoce1779_2|630387|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
TTTTCGGCAGGTTATGTCGAACCCTCTCGGATGCCCAACTCCCAACCCCC
TCCCCTAGCTCCAGCAGCGGGAGGAGAAGGAGGAGCAGCACGAATAGGGA
CGGGAGGGCAAAGACAAGGTTTTATGCAACCTGATTATGGCTATAACGGG
CAAATGCAGCAGCAGCAGCAGTGGGGAGTAGGAGGAGGGTTTGGGGGACC
ACCGCCCTGGCATCCGCAGCAGCAGCATCCGCCGCAGCAGCAGCATCAAC
ACGCGCCTTCCCTGTACTTCCGTCAGCCCTCAGCACATCTTTCCCAACCG
TCAAATATCGAGCAGCTGCTGCAGCAGCCACACCCCGCAGGGCCGCTCAG
CAAACCCCTTCCCCTAGGCCTCAAACCAGGGGAGGAGGTTGACGCCAGCT
CCCTCTTCCTTCCCCCTGGCCGTACCTCCCGCCCTCCCAAAATTTGTCTG
ATTTTGCGCGGGCTGCCGGGGAGTGGGAAGAGCCATCTTGCGAAGCTCAT
CCGATCGATCGAACGAGAACACAAAGGAGCAGCTCGCGTCCTTTGCTTGG
ACGACTACTTCCTCCAGGAGGTCACCGTTGAGGAAGTTGGGGAGGGCGGG
GTCCTGCAGAAGGTCACCAAACTTGAGTTTCAATACGAGGCAGAGATAGA
GGGGGTTTACATGGCCAGTCATTTCAAAGCCTTCCAAAAAACGATCAATG
AGGGGTTGTTTTCGGTGGTAGTTGCCGACGCAATTAATTTGTTAAGGTCG
CAATTCCAGGAGTTTTGGACTTGTGCCGTTGGGAAGGGGTTTAGGGCGTA
TGTGGTGGAGATGCCGGGGGGGTTAGATGTGGGGAGGTGTGCGAGGAGAA
ACGTGCATGGTTGGAGCAGGGAGGGCTTGGAGAAGATGAAAGAGGACTGG
GAAGGGACGCCGTTGCATATGGCGCGAATGACGGGGGTGGAGGGTTTGTT
GGGGGAGAAGGGGATAGAGGAGGTGGAGATGGGGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGTGGAGGGGGGGAGGGAGGGAGGGAGGAAGGT
CTGCCGGTGGGGGTAGAGAGGAGGAGGTGGAGCGGGAAGAAGAAGAAGGA
GGGGCAAGGAGGGAAGAGGAGTCGATGGGAGGTGGAGGAGGAGGAGGTGG
AGGAGGAAGCGGAGAAGGTGGTGCAAGGAAGATTTAAAATGGGGAAAGAA
CAGGGAGGGAAAGAGAAAAAGCGGGTCCAGTGGCGTGAAGTGATAGACGA
TTTGGCATTCTTTAATGATCGGGAGATGGTAGGCGTCATTCACAGGGAGA
GCGAGCACGGGTTGAAGGGGTCAGGTGGGGTGAGTGTGCTTGAGTTGAGG
AGGCGACAGAATGCACAAAAACGAAAAGAGGCCGAAGTAGTCGCAGGGCG
TCTCTCCTTCCTCCAAATGGTCCACCGAGAACAGAGGAGAGAGTTCAAGG
GGCAGAAAAAACATTTTCACCACGATGATATTGACGACAAGAAGGGCAGG
AATTCTGCTGCTGCTGCTGCTACCGCGGCCAGTGGCGGCGGTGCTAGCCG
GTGGGCAGATTCGGACTCAGACGATGAGGACGAGGGGGAAGGGCGGCGAG
GGTGGGCTTAAGCAGAGAAGAAAGGTAGGTACGTATACTGACGGTGGCAG
TAGTAGTATTAGTGGTAGAATTAGTGGTTGTAGTAATTGTAATAGTAGTA
GTGGCAGCAGCAGCAGCAGTAGCAGCGGCAGAAGTTGGTCTAGATTATGT
GTGTAAAGCAAATAACAAAGAATAAAATAAAGAAGATGAAGAAAGAGAAG back to topprotein sequence of jgi.p|Nanoce1779_2|630387 >mRNA_4529-protein ID=mRNA_4529-protein|Name=jgi.p|Nanoce1779_2|630387|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MPNSQPPPLAPAAGGEGGAARIGTGGQRQGFMQPDYGYNGQMQQQQQWGV
GGGFGGPPPWHPQQQHPPQQQHQHAPSLYFRQPSAHLSQPSNIEQLLQQP
HPAGPLSKPLPLGLKPGEEVDASSLFLPPGRTSRPPKICLILRGLPGSGK
SHLAKLIRSIEREHKGAARVLCLDDYFLQEVTVEEVGEGGVLQKVTKLEF
QYEAEIEGVYMASHFKAFQKTINEGLFSVVVADAINLLRSQFQEFWTCAV
GKGFRAYVVEMPGGLDVGRCARRNVHGWSREGLEKMKEDWEGTPLHMARM
TGVEGLLGEKGIEEVEMGEEEEEEEEEEEGGGGEGGREEGLPVGVERRRW
SGKKKKEGQGGKRSRWEVEEEEVEEEAEKVVQGRFKMGKEQGGKEKKRVQ
WREVIDDLAFFNDREMVGVIHRESEHGLKGSGGVSVLELRRRQNAQKRKE
AEVVAGRLSFLQMVHREQRREFKGQKKHFHHDDIDDKKGRNSAAAAATAA
SGGGASRWADSDSDDEDEGEGRRGWA* back to topmRNA from alignment at scaffold_10:837615..839998- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4529 ID=mRNA_4529|Name=jgi.p|Nanoce1779_2|630387|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp|location=Sequence derived from alignment at scaffold_10:837615..839998- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
TTTTCGGCAGGTTATGTCGAACCCTCTCGGATGCCCAACTCCCAACCCCC
TCCCCTAGCTCCAGCAGCGGGAGGAGAAGGAGGAGCAGCACGAATAGGGA
CGGGAGGGCAAAGACAAGGTTTTATGCAACCTGATTATGGCTATAACGGG
CAAATGCAGCAGCAGCAGCAGTGGGGAGTAGGAGGAGGGTTTGGGGGACC
ACCGCCCTGGCATCCGCAGCAGCAGCATCCGCCGCAGCAGCAGCATCAAC
ACGCGCCTTCCCTGTACTTCCGTCAGCCCTCAGCACATCTTTCCCAACCG
TCAAATATCGAGCAGCTGCTGCAGCAGCCACACCCCGCAGGGCCGCTCAG
CAAACCCCTTCCCCTAGGCCTCAAACCAGGGGAGGAGGTTGACGCCAGCT
CCCTCTTCCTTCCCCCTGGCCGTACCTCCCGCCCTCCCAAAATTTGTCTG
ATTTTGCGCGGGCTGCCGGGGAGTGGGAAGAGCCATCTTGCGAAGCTCAT
CCGATCGATCGAACGGTGAGTATTTCGGAGGGAGGGAGGGAGGGGGTGAT
GTATGTTCAAACAAATTTAATCGATATTCAAATGCAATGAATTAAGACGA
ATGGACAATAAGAATAACGAAGTCTCCACCCCCACCCACCTTGTACCTAC
GCACGCACGTCCACGTCATTACCATTCTGTATACACCCATGCATATATCC
CACACCTGTGACAGAGAACACAAAGGAGCAGCTCGCGTCCTTTGCTTGGA
CGACTACTTCCTCCAGGAGGTCACCGTTGAGGAAGTTGGGGAGGGCGGGG
TCCTGCAGAAGGTCACCAAACTTGAGTTTCAATACGAGGCAGAGATAGAG
GGGGTTTACATGGCCAGTCATTTCAAAGCCTTCCAAAAAACGATCAATGA
GGGGTTGTTTTCGGTGGTAGTTGCCGACGCAATTAATTTGTTAAGGTCGC
AATTCCAGGAGTTTTGGACTTGTGCCGTTGGGAAGGGGTTTAGGGCGTAT
GTGGTGGAGATGCCGGGGGGGTTAGATGTGGGGAGGTGTGCGAGGAGAAA
CGTGCATGGTTGGAGCAGGGAGGGCTTGGAGAAGATGAAAGAGGACTGGG
AAGGGACGCCGTTGCATATGGCGCGAATGACGGGGGTGGAGGGTTTGTTG
GGGGAGAAGGGGATAGAGGAGGTGGAGATGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGGTGGAGGGGGGGAGGGAGGGAGGGAGGAAGGTC
TGCCGGTGGGGGTAGAGAGGAGGAGGTGGAGCGGGAAGAAGAAGAAGGAG
GGGCAAGGAGGGAAGAGGAGTCGATGGGAGGTGGAGGAGGAGGAGGTGGA
GGAGGAAGCGGAGAAGGTGGTGCAAGGAAGATTTAAAATGGGGAAAGAAC
AGGGAGGGAAAGAGAAAAAGCGGGTCCAGTGGCGTGAAGTGATAGACGAT
TTGGCATTCTTTAATGATCGGGAGATGGTAGGCGTCATTCACAGGGAGAG
CGAGCACGGGTTGAAGGGGTCAGGTGGGGTGAGTGTGCTTGAGTTGAGGA
GGCGACAGGTAAGGAGGAAGGGAATGAGGGTGAGGTGTGGACCTGGGAGG
GAGGGAGGGTAGTTGGAAATTGAGGCGAGCAAACGTGAGAAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGTGTGTCACGG
AATGCTTCATAATCACGAACTCATCACTATCTGCCTTCCATCTCTCTCCC
TTCTTCATGCGTATATGTATGTATGTGTGCGTGTGTGTATATCGCCTTGT
ATTGCTTTGCCCTATATTCGCCCCTCTCTTTCCTCCCTCCTCTCCTTCGT
CCTTCCTTCTCTTCTTCCGCCGATATCCTACCGAATCTTCTAGAATGCAC
AAAAACGAAAAGAGGCCGAAGTAGTCGCAGGGCGTCTCTCCTTCCTCCAA
ATGGTCCACCGAGAACAGAGGAGAGAGTTCAAGGGGCAGAAAAAACATTT
TCACCACGATGATATTGACGACAAGAAGGGCAGGAATTCTGCTGCTGCTG
CTGCTACCGCGGCCAGTGGCGGCGGTGCTAGCCGGTGGGCAGATTCGGAC
TCAGACGATGAGGACGAGGGGGAAGGGCGGCGAGGGTGGGCTTAAGCAGA
GAAGAAAGGTAGGTACGTATACTGACGGTGGCAGTAGTAGTATTAGTGGT
AGAATTAGTGGTTGTAGTAATTGTAATAGTAGTAGTGGCAGCAGCAGCAG
CAGTAGCAGCGGCAGAAGTTGGTCTAGATTATGTGTGTAAAGCAAATAAC
AAAGAATAAAATAAAGAAGATGAAGAAAGAGAAG back to topCoding sequence (CDS) from alignment at scaffold_10:837615..839998- >mRNA_4529 ID=mRNA_4529|Name=jgi.p|Nanoce1779_2|630387|organism=Nannochloropsis oceanica|type=CDS|length=4743bp|location=Sequence derived from alignment at scaffold_10:837615..839998- (Nannochloropsis oceanica)
AATGCACAAAAACGAAAAGAGGCCGAAGTAGTCGCAGGGCGTCTCTCCTT
CCTCCAAATGGTCCACCGAGAACAGAGGAGAGAGTTCAAGGGGCAGAAAA
AACATTTTCACCACGATGATATTGACGACAAGAAGGGCAGGAATTCTGCT
GCTGCTGCTGCTACCGCGGCCAGTGGCGGCGGTGCTAGCCGGTGGGCAGA
TTCGGACTCAGACGATGAGGACGAGGGGGAAGGGCGGCGAGGGTGGGCTT
AAAGAACACAAAGGAGCAGCTCGCGTCCTTTGCTTGGACGACTACTTCCT
CCAGGAGGTCACCGTTGAGGAAGTTGGGGAGGGCGGGGTCCTGCAGAAGG
TCACCAAACTTGAGTTTCAATACGAGGCAGAGATAGAGGGGGTTTACATG
GCCAGTCATTTCAAAGCCTTCCAAAAAACGATCAATGAGGGGTTGTTTTC
GGTGGTAGTTGCCGACGCAATTAATTTGTTAAGGTCGCAATTCCAGGAGT
TTTGGACTTGTGCCGTTGGGAAGGGGTTTAGGGCGTATGTGGTGGAGATG
CCGGGGGGGTTAGATGTGGGGAGGTGTGCGAGGAGAAACGTGCATGGTTG
GAGCAGGGAGGGCTTGGAGAAGATGAAAGAGGACTGGGAAGGGACGCCGT
TGCATATGGCGCGAATGACGGGGGTGGAGGGTTTGTTGGGGGAGAAGGGG
ATAGAGGAGGTGGAGATGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGTGGAGGGGGGGAGGGAGGGAGGGAGGAAGGTCTGCCGGTGGGGG
TAGAGAGGAGGAGGTGGAGCGGGAAGAAGAAGAAGGAGGGGCAAGGAGGG
AAGAGGAGTCGATGGGAGGTGGAGGAGGAGGAGGTGGAGGAGGAAGCGGA
GAAGGTGGTGCAAGGAAGATTTAAAATGGGGAAAGAACAGGGAGGGAAAG
AGAAAAAGCGGGTCCAGTGGCGTGAAGTGATAGACGATTTGGCATTCTTT
AATGATCGGGAGATGGTAGGCGTCATTCACAGGGAGAGCGAGCACGGGTT
GAAGGGGTCAGGTGGGGTGAGTGTGCTTGAGTTGAGGAGGCGACAGATGC
CCAACTCCCAACCCCCTCCCCTAGCTCCAGCAGCGGGAGGAGAAGGAGGA
GCAGCACGAATAGGGACGGGAGGGCAAAGACAAGGTTTTATGCAACCTGA
TTATGGCTATAACGGGCAAATGCAGCAGCAGCAGCAGTGGGGAGTAGGAG
GAGGGTTTGGGGGACCACCGCCCTGGCATCCGCAGCAGCAGCATCCGCCG
CAGCAGCAGCATCAACACGCGCCTTCCCTGTACTTCCGTCAGCCCTCAGC
ACATCTTTCCCAACCGTCAAATATCGAGCAGCTGCTGCAGCAGCCACACC
CCGCAGGGCCGCTCAGCAAACCCCTTCCCCTAGGCCTCAAACCAGGGGAG
GAGGTTGACGCCAGCTCCCTCTTCCTTCCCCCTGGCCGTACCTCCCGCCC
TCCCAAAATTTGTCTGATTTTGCGCGGGCTGCCGGGGAGTGGGAAGAGCC
ATCTTGCGAAGCTCATCCGATCGATCGAACGAATGCACAAAAACGAAAAG
AGGCCGAAGTAGTCGCAGGGCGTCTCTCCTTCCTCCAAATGGTCCACCGA
GAACAGAGGAGAGAGTTCAAGGGGCAGAAAAAACATTTTCACCACGATGA
TATTGACGACAAGAAGGGCAGGAATTCTGCTGCTGCTGCTGCTACCGCGG
CCAGTGGCGGCGGTGCTAGCCGGTGGGCAGATTCGGACTCAGACGATGAG
GACGAGGGGGAAGGGCGGCGAGGGTGGGCTTAAAGAACACAAAGGAGCAG
CTCGCGTCCTTTGCTTGGACGACTACTTCCTCCAGGAGGTCACCGTTGAG
GAAGTTGGGGAGGGCGGGGTCCTGCAGAAGGTCACCAAACTTGAGTTTCA
ATACGAGGCAGAGATAGAGGGGGTTTACATGGCCAGTCATTTCAAAGCCT
TCCAAAAAACGATCAATGAGGGGTTGTTTTCGGTGGTAGTTGCCGACGCA
ATTAATTTGTTAAGGTCGCAATTCCAGGAGTTTTGGACTTGTGCCGTTGG
GAAGGGGTTTAGGGCGTATGTGGTGGAGATGCCGGGGGGGTTAGATGTGG
GGAGGTGTGCGAGGAGAAACGTGCATGGTTGGAGCAGGGAGGGCTTGGAG
AAGATGAAAGAGGACTGGGAAGGGACGCCGTTGCATATGGCGCGAATGAC
GGGGGTGGAGGGTTTGTTGGGGGAGAAGGGGATAGAGGAGGTGGAGATGG
GGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGAGGGGGGGAG
GGAGGGAGGGAGGAAGGTCTGCCGGTGGGGGTAGAGAGGAGGAGGTGGAG
CGGGAAGAAGAAGAAGGAGGGGCAAGGAGGGAAGAGGAGTCGATGGGAGG
TGGAGGAGGAGGAGGTGGAGGAGGAAGCGGAGAAGGTGGTGCAAGGAAGA
TTTAAAATGGGGAAAGAACAGGGAGGGAAAGAGAAAAAGCGGGTCCAGTG
GCGTGAAGTGATAGACGATTTGGCATTCTTTAATGATCGGGAGATGGTAG
GCGTCATTCACAGGGAGAGCGAGCACGGGTTGAAGGGGTCAGGTGGGGTG
AGTGTGCTTGAGTTGAGGAGGCGACAGATGCCCAACTCCCAACCCCCTCC
CCTAGCTCCAGCAGCGGGAGGAGAAGGAGGAGCAGCACGAATAGGGACGG
GAGGGCAAAGACAAGGTTTTATGCAACCTGATTATGGCTATAACGGGCAA
ATGCAGCAGCAGCAGCAGTGGGGAGTAGGAGGAGGGTTTGGGGGACCACC
GCCCTGGCATCCGCAGCAGCAGCATCCGCCGCAGCAGCAGCATCAACACG
CGCCTTCCCTGTACTTCCGTCAGCCCTCAGCACATCTTTCCCAACCGTCA
AATATCGAGCAGCTGCTGCAGCAGCCACACCCCGCAGGGCCGCTCAGCAA
ACCCCTTCCCCTAGGCCTCAAACCAGGGGAGGAGGTTGACGCCAGCTCCC
TCTTCCTTCCCCCTGGCCGTACCTCCCGCCCTCCCAAAATTTGTCTGATT
TTGCGCGGGCTGCCGGGGAGTGGGAAGAGCCATCTTGCGAAGCTCATCCG
ATCGATCGAACGAATGCACAAAAACGAAAAGAGGCCGAAGTAGTCGCAGG
GCGTCTCTCCTTCCTCCAAATGGTCCACCGAGAACAGAGGAGAGAGTTCA
AGGGGCAGAAAAAACATTTTCACCACGATGATATTGACGACAAGAAGGGC
AGGAATTCTGCTGCTGCTGCTGCTACCGCGGCCAGTGGCGGCGGTGCTAG
CCGGTGGGCAGATTCGGACTCAGACGATGAGGACGAGGGGGAAGGGCGGC
GAGGGTGGGCTTAAAGAACACAAAGGAGCAGCTCGCGTCCTTTGCTTGGA
CGACTACTTCCTCCAGGAGGTCACCGTTGAGGAAGTTGGGGAGGGCGGGG
TCCTGCAGAAGGTCACCAAACTTGAGTTTCAATACGAGGCAGAGATAGAG
GGGGTTTACATGGCCAGTCATTTCAAAGCCTTCCAAAAAACGATCAATGA
GGGGTTGTTTTCGGTGGTAGTTGCCGACGCAATTAATTTGTTAAGGTCGC
AATTCCAGGAGTTTTGGACTTGTGCCGTTGGGAAGGGGTTTAGGGCGTAT
GTGGTGGAGATGCCGGGGGGGTTAGATGTGGGGAGGTGTGCGAGGAGAAA
CGTGCATGGTTGGAGCAGGGAGGGCTTGGAGAAGATGAAAGAGGACTGGG
AAGGGACGCCGTTGCATATGGCGCGAATGACGGGGGTGGAGGGTTTGTTG
GGGGAGAAGGGGATAGAGGAGGTGGAGATGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGGTGGAGGGGGGGAGGGAGGGAGGGAGGAAGGTC
TGCCGGTGGGGGTAGAGAGGAGGAGGTGGAGCGGGAAGAAGAAGAAGGAG
GGGCAAGGAGGGAAGAGGAGTCGATGGGAGGTGGAGGAGGAGGAGGTGGA
GGAGGAAGCGGAGAAGGTGGTGCAAGGAAGATTTAAAATGGGGAAAGAAC
AGGGAGGGAAAGAGAAAAAGCGGGTCCAGTGGCGTGAAGTGATAGACGAT
TTGGCATTCTTTAATGATCGGGAGATGGTAGGCGTCATTCACAGGGAGAG
CGAGCACGGGTTGAAGGGGTCAGGTGGGGTGAGTGTGCTTGAGTTGAGGA
GGCGACAGATGCCCAACTCCCAACCCCCTCCCCTAGCTCCAGCAGCGGGA
GGAGAAGGAGGAGCAGCACGAATAGGGACGGGAGGGCAAAGACAAGGTTT
TATGCAACCTGATTATGGCTATAACGGGCAAATGCAGCAGCAGCAGCAGT
GGGGAGTAGGAGGAGGGTTTGGGGGACCACCGCCCTGGCATCCGCAGCAG
CAGCATCCGCCGCAGCAGCAGCATCAACACGCGCCTTCCCTGTACTTCCG
TCAGCCCTCAGCACATCTTTCCCAACCGTCAAATATCGAGCAGCTGCTGC
AGCAGCCACACCCCGCAGGGCCGCTCAGCAAACCCCTTCCCCTAGGCCTC
AAACCAGGGGAGGAGGTTGACGCCAGCTCCCTCTTCCTTCCCCCTGGCCG
TACCTCCCGCCCTCCCAAAATTTGTCTGATTTTGCGCGGGCTGCCGGGGA
GTGGGAAGAGCCATCTTGCGAAGCTCATCCGATCGATCGAACG back to top
|