jgi.p|Nanoce1779_2|565944, mRNA_4527 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565944
Unique NamemRNA_4527
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length426
Alignment locationscaffold_10:828366..828791 -

Link to JBrowse

Properties
Property NameValue
TranscriptId566030
TrackFilteredModels2
ProteinId565944
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:828366..828791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565944gene_4527Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4527CDS_4527Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565944mRNA_4527-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4527 ID=mRNA_4527|Name=jgi.p|Nanoce1779_2|565944|organism=Nannochloropsis oceanica|type=mRNA|length=426bp
ATGCGGCCTTACACCCTCACCAAAATTAAAAAGGAGACGTTTACAAGCAT
CATGGATGCTTTGAAGCTGATGGTCCGCCATGCCATCTCCACTTTTACGG
AGCTCGTATTGGAGGCGCATGAGCGGGGGGAGGTTGAGTTTGTGCAGATG
CTTATTATTTCCACGGCAGACGAGTTGGAGGTCAGCCATGCGGATGTAGA
GGCACTGAAGGATCCGATGCTTTTGCTTGATATTTTACAGGCGAAGCATC
ACCACAACCCGTTTGCGTGGGGAGAGAGCTGCTTGCTCGCATGGGCCATG
ACAATGGGGAACCTCGATGTAAGCATTTACCTTATAGTGATAATATTTTT
TGGAAGGATGAGGGAAAAGGCAGTGAATGTAGTTTTGGAATGGGTGAATG
ACATCCAAATCCAAGCAAACAACTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|565944

>mRNA_4527-protein ID=mRNA_4527-protein|Name=jgi.p|Nanoce1779_2|565944|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MRPYTLTKIKKETFTSIMDALKLMVRHAISTFTELVLEAHERGEVEFVQM
LIISTADELEVSHADVEALKDPMLLLDILQAKHHHNPFAWGESCLLAWAM
TMGNLDVSIYLIVIIFFGRMREKAVNVVLEWVNDIQIQANN*
back to top

mRNA from alignment at scaffold_10:828366..828791-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4527 ID=mRNA_4527|Name=jgi.p|Nanoce1779_2|565944|organism=Nannochloropsis oceanica|type=mRNA|length=426bp|location=Sequence derived from alignment at scaffold_10:828366..828791- (Nannochloropsis oceanica)
ATGCGGCCTTACACCCTCACCAAAATTAAAAAGGAGACGTTTACAAGCAT CATGGATGCTTTGAAGCTGATGGTCCGCCATGCCATCTCCACTTTTACGG AGCTCGTATTGGAGGCGCATGAGCGGGGGGAGGTTGAGTTTGTGCAGATG CTTATTATTTCCACGGCAGACGAGTTGGAGGTCAGCCATGCGGATGTAGA GGCACTGAAGGATCCGATGCTTTTGCTTGATATTTTACAGGCGAAGCATC ACCACAACCCGTTTGCGTGGGGAGAGAGCTGCTTGCTCGCATGGGCCATG ACAATGGGGAACCTCGATGTAAGCATTTACCTTATAGTGATAATATTTTT TGGAAGGATGAGGGAAAAGGCAGTGAATGTAGTTTTGGAATGGGTGAATG ACATCCAAATCCAAGCAAACAACTGA
back to top

Coding sequence (CDS) from alignment at scaffold_10:828366..828791-

>mRNA_4527 ID=mRNA_4527|Name=jgi.p|Nanoce1779_2|565944|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_10:828366..828791- (Nannochloropsis oceanica)
ATGCGGCCTTACACCCTCACCAAAATTAAAAAGGAGACGTTTACAAGCAT
CATGGATGCTTTGAAGCTGATGGTCCGCCATGCCATCTCCACTTTTACGG
AGCTCGTATTGGAGGCGCATGAGCGGGGGGAGGTTGAGTTTGTGCAGATG
CTTATTATTTCCACGGCAGACGAGTTGGAGGTCAGCCATGCGGATGTAGA
GGCACTGAAGGATCCGATGCTTTTGCTTGATATTTTACAGGCGAAGCATC
ACCACAACCCGTTTGCGTGGGGAGAGAGCTGCTTGCTCGCATGGGCCATG
ACAATGGGGAACCTCGATGTAAGCATTTACCTTATAGTGATAATATTTTT
TGGAAGGATGAGGGAAAAGGCAGTGAATGTAGTTTTGGAATGGGTGAATG
ACATCCAAATCCAAGCAAACAACTGA
back to top
Synonyms
Publications