Properties
| Property Name | Value |
|---|
| TranscriptId | 589500 |
| Track | FilteredModels2 |
| ProteinId | 589414 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:807177..810327 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4522 ID=mRNA_4522|Name=jgi.p|Nanoce1779_2|589414|organism=Nannochloropsis oceanica|type=mRNA|length=2791bp
GACGCGTACGTCTCATCCTTCTCTCCCTTCTACACTCCCTACTTCCCAAC
AACAGGCGGGCTCTTTCTGTCAGCTATTTTTTGTTAAACGGGAGACGGAG
AAAAGATTAAACATATGAAGCCCAAGCGTGGACAGCAGAAGCAGCAGCAG
AAGACGAGAAGCTGTAAGAATTCCTCCGCCACCATAGAGAGCATGTGCTT
GGACCAGGCAGCGGACACCTTTGTCCGCCTGGCAGCAGGGTATGAGACAG
CGGCGGCGGCGGCGAAGGTGGGACAGACAGACAAAATAGCTGTACTGGCC
CGAGTACAGTCCCTGTTCCTCCAAGTACGGAGTGAGTCTGAGTGGCTGGC
GTTCAAGGAGAAGCTGGACGCCTGGGCTAAGAAGGAGAGCTCGAAGCGAT
TGGACACGGAGGCGGCTGCGAAGATCGCCAGGGAAAAGGCGGACTCGACG
TGGATGGAGTACCAGAAGACCTTGACCCCGATCGGTGAGGATACGCTGAT
GGAGGTGAATGGTTTGGGGGGGTGATGCAGGTGCTTTGCCGAGGAGACGG
CATGTGCATGATGCGTAGCATCGCTCAGCAGTGGGCTACGTTGGACCCTG
TTGGGTTCCGCTTCTGGTACTCGAGGACGTACTCGAGGACGTTTGGCCAA
GTCCTCGAGATGGGCTATGTGGATTTTGCCAAGGAGACGTTTACAAGCAT
CATGGATGCTTTGAAGCTGATGGTCCGCCATGCCATCTCCACTTTTACGG
AGCTCGTATTGGAGGCGCATGAGCGGGGGGAGGTTGAGTTTGTGCAGATG
CTCATTATTTCCGCGGCAGACGAGTTGGAGGTCAGCCATGCGGAGGTAAA
GGCACTGAAGGATCCGATGCTTTTGCTTGATATTTTACAGGCGAAGCATC
ACCACAACCCGTTTGCGTGGGGGGAGAGCTGCTTGCTGTTGGGTGCCATG
ACAATGGGGAACCTCGATCTCATGGTTTTGCGTCTAAACCTGGACTCGGT
GGATGGAAAGGCGCATGCAAGAACGAGACCATATGCGCACCAGTACAACA
AAGAGGGTGGTTGGTCGGTATTTGGGCTTGTGAGCATTGGCATTGGTGTC
CAATATGAGCACTTTAATGTGCTGGCCTTGGGCGACTTTCTGATGCAACA
CGTGGTGCAGGCGTCGCTGACGTCGGAGCGGAAGAGGGAACAGGAGCAGG
AGCAGCGACAGCAAATAATATCTTTGCCGCGGTGGGAGCAAGAGAAGAGA
AAGGAGCACAGGGAGGGAAGAGATGCTGCCCTCCCCTAATGCGAGGGAGA
GTGCCAAGGAGCGGAAGAGGAGGCACAGACCGAGGTGAGCTTTGCTACCA
GGATGGACGCAGAGAAGAACGGGAAGGGGGATATAGTAGAAGAGCAAAAA
GATGAACAGAAAGAGGGTGTGGTCAAGGGGGAGGACATGGCAAAAATGGC
AGTGCAAGAAACTGCTGTCGGGGCAGGCAACGAGGAAGTGGAGGAGGATG
CACAGGCGACTGCTGTGGTGGCTCAAGGTCTGGAAGAGGAGTTCATCAAG
GAAACAAAGGAGGAGGTAGAGGAGGAAGATATGACGCCAATACAAGTTGT
ATCGGTGCTGACCTCCAATTGCGAGACGAGTGATCATGTATCACCAACGT
GGGTGTCGACTAGGGATGGGATTGCAATACCTCGCACCTCTGTTCCTGCC
ACTGACTCGCCATCGATACCGATTCCCATCATCGCTGCGGCGTCAGCTGC
ACTTCCAAGAGAAAGCGATGAGCTAGACCAGTCAAAAGCTACCAAAACCT
TCACATCTACCTCCACGCGGACTGCGGCCAAGAAAAGACGCAAAGCTGCG
GCTAGGAAGAAGAAGAAGAAGTGCCGGCAAATAGAAACAGCAGCAGCAGC
AGCAGCGGCAGTGGCGGCAGCAGCGGAGCCTACACCTGCGGCCTTGATGG
GACGGGACGTATCCCCTTTTCCTTTCCTTCCCTAGGTCGAAGCCGATCTT
GCTCCAGTCGAAATTCCCCGTTCCCTCCAACCGCTATACCTCTATTCGCT
GGACAACTCCGTGGGTGGCGATAGAGAGGAGGAGAGCGCACCCCTAACAC
AGGCTGCGCCCATAGGTTTGACTGCGGTTGTGGAAGAGAAGGTGAGGATG
GTCCAGGTTTCTGCCGTCGACGCAGTAATAGCCAAAGTAGAAGTACCAGG
GAACGACAGCAGTAGTAGCACCACCGCCACTAATATCGATTACATCCAGG
GCCTGCTCGTTTCTCCGTCTGTGCCTTCTCTTCTTCCCTCCCCTTCGACC
TGGGATAAGGAAGAGGAGAAGATGGTGCCCCTGGGCCGCAGCCACAGTTT
CCCCTCATTTGAGCAATGCATGTCGGTGGCGCTTTCCCCCCTCCAAGTAT
TGAGAAAAGGGGTCGATTTGGCGCTCAATTGTGTAAAGGAAGGAGGACTG
TTAGTCGTTTTGTTTGGCCAGCGTGGGGAAAGGGGAGGAGGTGGTTCTTG
GAATTGAGGGAGAGGTCGAGGAGGCGGTAGTAGTTGTTGCGTAGGTTTTG
GAAATGAAGGAGGGAGGAAAGAATGGAGGGCATGTGCACGTGCGTATTTC
ATAAATAGTATGAAGAGATACTCAGATTGCACTTTTAAAAAAATTGCAAG
CAACACACATATAAGAGTCGGCCAAGCACACATGACCCGCAGCACCCTTC
ATAATGGAGCGCCTCTGTGCATATAAATAGAAGCTTGCAATCGTAAGACC
AGCTACAATCAAAGCAAACAAAGTATCACCACGGCGAGCAC back to topprotein sequence of jgi.p|Nanoce1779_2|589414 >mRNA_4522-protein ID=mRNA_4522-protein|Name=jgi.p|Nanoce1779_2|589414|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MQVLCRGDGMCMMRSIAQQWATLDPVGFRFWYSRTYSRTFGQVLEMGYVD
FAKETFTSIMDALKLMVRHAISTFTELVLEAHERGEVEFVQMLIISAADE
LEVSHAEVKALKDPMLLLDILQAKHHHNPFAWGESCLLLGAMTMGNLDLM
VLRLNLDSVDGKAHARTRPYAHQYNKEGGWSVFGLVSIGIGVQYEHFNVL
ALGDFLMQHVVQASLTSERKREQEQEQRQQIISLPRWEQEKRKEHREGRD
AALP* back to topmRNA from alignment at scaffold_10:807177..810327- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4522 ID=mRNA_4522|Name=jgi.p|Nanoce1779_2|589414|organism=Nannochloropsis oceanica|type=mRNA|length=3151bp|location=Sequence derived from alignment at scaffold_10:807177..810327- (Nannochloropsis oceanica)
GACGCGTACGTCTCATCCTTCTCTCCCTTCTACACTCCCTACTTCCCAAC
AACAGGCGGGCTCTTTCTGTCAGCTATTTTTTGTTAAACGGGAGACGGAG
AAAAGATTAAACATATGAAGCCCAAGCGTGGACAGCAGAAGCAGCAGCAG
AAGACGAGAAGCTGTAAGAATTCCTCCGCCACCATAGAGAGCATGTGCTT
GGACCAGGCAGCGGACACCTTTGTCCGCCTGGCAGCAGGGTATGAGACAG
CGGCGGCGGCGGCGAAGGTGGGACAGACAGACAAAATAGCTGTACTGGCC
CGAGTACAGTCCCTGTTCCTCCAAGTACGGAGTGAGTCTGAGTGGCTGGC
GTTCAAGGAGAAGCTGGACGCCTGGGCTAAGAAGGAGAGCTCGAAGCGAT
TGGACACGGAGGCGGCTGCGAAGATCGCCAGGGAAAAGGCGGACTCGACG
TGGATGGAGTACCAGAAGACCTTGACCCCGATCGGTGAGGATACGCTGAT
GGAGGTGAATGGTTTGGGGGGGTGATGCAGGTGCTTTGCCGAGGAGACGG
CATGTGCATGATGCGTAGCATCGCTCAGCAGTGGGCTACGTTGGACCCTG
TTGGGTTCCGCTTCTGGTACTCGAGGACGTACTCGAGGACGTTTGGCCAA
GTCCTCGAGATGGGCTATGTGGATTTTGCCAAGGTACATACAAGCTTGTC
CTCATTTCATTAATTTAAAAGTGAAGGGAGGAGGGAGGGAGGAATGAAGG
GAAAAATTGAGAGACGAATGCTGGAAGGGGAGGGGGGATAGAAGGGGATG
GCTTTACGTCTTTCTTTCTCACATCATGCGGCCTCACACCCTCACCAAAA
TTAAAAAGGAGACGTTTACAAGCATCATGGATGCTTTGAAGCTGATGGTC
CGCCATGCCATCTCCACTTTTACGGAGCTCGTATTGGAGGCGCATGAGCG
GGGGGAGGTTGAGTTTGTGCAGATGCTCATTATTTCCGCGGCAGACGAGT
TGGAGGTCAGCCATGCGGAGGTAAAGGCACTGAAGGATCCGATGCTTTTG
CTTGATATTTTACAGGCGAAGCATCACCACAACCCGTTTGCGTGGGGGGA
GAGCTGCTTGCTGTTGGGTGCCATGACAATGGGGAACCTCGATGTAAGCA
TTCATTACATAGCGAATTTCTTTTGTGGGATATGGGGAGGAGGGACAGGA
TCAATTAGAGTCTCGATCGTTTGCTGGATAAGGATATCATTCACCTATCC
CAAAAATTACATTCGTTGCCTTTTCCCTTTTCCCTCTTCCTTCCCCCAAC
TACCCCTCCCCCTCCCTCATACCCCCAGCTCATGGTTTTGCGTCTAAACC
TGGACTCGGTGGATGGAAAGGCGCATGCAAGAACGAGACCATATGCGCAC
CAGTACAACAAAGAGGGTGGTTGGTCGGTATTTGGGCTTGTGAGCATTGG
CATTGGTGTCCAATATGAGCACTTTAATGTGCTGGCCTTGGGCGACTTTC
TGATGCAACACGTGGTGCAGGCGTCGCTGACGTCGGAGCGGAAGAGGGAA
CAGGAGCAGGAGCAGCGACAGCAAATAATATCTTTGCCGCGGTGGGAGCA
AGAGAAGAGAAAGGAGCACAGGGAGGGAAGAGATGCTGCCCTCCCCTAAT
GCGAGGGAGAGTGCCAAGGAGCGGAAGAGGAGGCACAGACCGAGGTGAGC
TTTGCTACCAGGATGGACGCAGAGAAGAACGGGAAGGGGGATATAGTAGA
AGAGCAAAAAGATGAACAGAAAGAGGGTGTGGTCAAGGGGGAGGACATGG
CAAAAATGGCAGTGCAAGAAACTGCTGTCGGGGCAGGCAACGAGGAAGTG
GAGGAGGATGCACAGGCGACTGCTGTGGTGGCTCAAGGTCTGGAAGAGGA
GTTCATCAAGGAAACAAAGGAGGAGGTAGAGGAGGAAGATATGACGCCAA
TACAAGTTGTATCGGTGCTGACCTCCAATTGCGAGACGAGTGATCATGTA
TCACCAACGTGGGTGTCGACTAGGGATGGGATTGCAATACCTCGCACCTC
TGTTCCTGCCACTGACTCGCCATCGATACCGATTCCCATCATCGCTGCGG
CGTCAGCTGCACTTCCAAGAGAAAGCGATGAGCTAGACCAGTCAAAAGCT
ACCAAAACCTTCACATCTACCTCCACGCGGACTGCGGCCAAGAAAAGACG
CAAAGCTGCGGCTAGGAAGAAGAAGAAGAAGTGCCGGCAAATAGAAACAG
CAGCAGCAGCAGCAGCGGCAGTGGCGGCAGCAGCGGAGCCTACACCTGCG
GCCTTGATGGGACGGGACGTATCCCCTTTTCCTTTCCTTCCCTAGGTCGA
AGCCGATCTTGCTCCAGTCGAAATTCCCCGTTCCCTCCAACCGCTATACC
TCTATTCGCTGGACAACTCCGTGGGTGGCGATAGAGAGGAGGAGAGCGCA
CCCCTAACACAGGCTGCGCCCATAGGTTTGACTGCGGTTGTGGAAGAGAA
GGTGAGGATGGTCCAGGTTTCTGCCGTCGACGCAGTAATAGCCAAAGTAG
AAGTACCAGGGAACGACAGCAGTAGTAGCACCACCGCCACTAATATCGAT
TACATCCAGGGCCTGCTCGTTTCTCCGTCTGTGCCTTCTCTTCTTCCCTC
CCCTTCGACCTGGGATAAGGAAGAGGAGAAGATGGTGCCCCTGGGCCGCA
GCCACAGTTTCCCCTCATTTGAGCAATGCATGTCGGTGGCGCTTTCCCCC
CTCCAAGTATTGAGAAAAGGGGTCGATTTGGCGCTCAATTGTGTAAAGGA
AGGAGGACTGTTAGTCGTTTTGTTTGGCCAGCGTGGGGAAAGGGGAGGAG
GTGGTTCTTGGAATTGAGGGAGAGGTCGAGGAGGCGGTAGTAGTTGTTGC
GTAGGTTTTGGAAATGAAGGAGGGAGGAAAGAATGGAGGGCATGTGCACG
TGCGTATTTCATAAATAGTATGAAGAGATACTCAGATTGCACTTTTAAAA
AAATTGCAAGCAACACACATATAAGAGTCGGCCAAGCACACATGACCCGC
AGCACCCTTCATAATGGAGCGCCTCTGTGCATATAAATAGAAGCTTGCAA
TCGTAAGACCAGCTACAATCAAAGCAAACAAAGTATCACCACGGCGAGCA
C back to topCoding sequence (CDS) from alignment at scaffold_10:807177..810327- >mRNA_4522 ID=mRNA_4522|Name=jgi.p|Nanoce1779_2|589414|organism=Nannochloropsis oceanica|type=CDS|length=2295bp|location=Sequence derived from alignment at scaffold_10:807177..810327- (Nannochloropsis oceanica)
CTCATGGTTTTGCGTCTAAACCTGGACTCGGTGGATGGAAAGGCGCATGC
AAGAACGAGACCATATGCGCACCAGTACAACAAAGAGGGTGGTTGGTCGG
TATTTGGGCTTGTGAGCATTGGCATTGGTGTCCAATATGAGCACTTTAAT
GTGCTGGCCTTGGGCGACTTTCTGATGCAACACGTGGTGCAGGCGTCGCT
GACGTCGGAGCGGAAGAGGGAACAGGAGCAGGAGCAGCGACAGCAAATAA
TATCTTTGCCGCGGTGGGAGCAAGAGAAGAGAAAGGAGCACAGGGAGGGA
AGAGATGCTGCCCTCCCCTAAGAGACGTTTACAAGCATCATGGATGCTTT
GAAGCTGATGGTCCGCCATGCCATCTCCACTTTTACGGAGCTCGTATTGG
AGGCGCATGAGCGGGGGGAGGTTGAGTTTGTGCAGATGCTCATTATTTCC
GCGGCAGACGAGTTGGAGGTCAGCCATGCGGAGGTAAAGGCACTGAAGGA
TCCGATGCTTTTGCTTGATATTTTACAGGCGAAGCATCACCACAACCCGT
TTGCGTGGGGGGAGAGCTGCTTGCTGTTGGGTGCCATGACAATGGGGAAC
CTCGATATGCAGGTGCTTTGCCGAGGAGACGGCATGTGCATGATGCGTAG
CATCGCTCAGCAGTGGGCTACGTTGGACCCTGTTGGGTTCCGCTTCTGGT
ACTCGAGGACGTACTCGAGGACGTTTGGCCAAGTCCTCGAGATGGGCTAT
GTGGATTTTGCCAAGCTCATGGTTTTGCGTCTAAACCTGGACTCGGTGGA
TGGAAAGGCGCATGCAAGAACGAGACCATATGCGCACCAGTACAACAAAG
AGGGTGGTTGGTCGGTATTTGGGCTTGTGAGCATTGGCATTGGTGTCCAA
TATGAGCACTTTAATGTGCTGGCCTTGGGCGACTTTCTGATGCAACACGT
GGTGCAGGCGTCGCTGACGTCGGAGCGGAAGAGGGAACAGGAGCAGGAGC
AGCGACAGCAAATAATATCTTTGCCGCGGTGGGAGCAAGAGAAGAGAAAG
GAGCACAGGGAGGGAAGAGATGCTGCCCTCCCCTAAGAGACGTTTACAAG
CATCATGGATGCTTTGAAGCTGATGGTCCGCCATGCCATCTCCACTTTTA
CGGAGCTCGTATTGGAGGCGCATGAGCGGGGGGAGGTTGAGTTTGTGCAG
ATGCTCATTATTTCCGCGGCAGACGAGTTGGAGGTCAGCCATGCGGAGGT
AAAGGCACTGAAGGATCCGATGCTTTTGCTTGATATTTTACAGGCGAAGC
ATCACCACAACCCGTTTGCGTGGGGGGAGAGCTGCTTGCTGTTGGGTGCC
ATGACAATGGGGAACCTCGATATGCAGGTGCTTTGCCGAGGAGACGGCAT
GTGCATGATGCGTAGCATCGCTCAGCAGTGGGCTACGTTGGACCCTGTTG
GGTTCCGCTTCTGGTACTCGAGGACGTACTCGAGGACGTTTGGCCAAGTC
CTCGAGATGGGCTATGTGGATTTTGCCAAGCTCATGGTTTTGCGTCTAAA
CCTGGACTCGGTGGATGGAAAGGCGCATGCAAGAACGAGACCATATGCGC
ACCAGTACAACAAAGAGGGTGGTTGGTCGGTATTTGGGCTTGTGAGCATT
GGCATTGGTGTCCAATATGAGCACTTTAATGTGCTGGCCTTGGGCGACTT
TCTGATGCAACACGTGGTGCAGGCGTCGCTGACGTCGGAGCGGAAGAGGG
AACAGGAGCAGGAGCAGCGACAGCAAATAATATCTTTGCCGCGGTGGGAG
CAAGAGAAGAGAAAGGAGCACAGGGAGGGAAGAGATGCTGCCCTCCCCTA
AGAGACGTTTACAAGCATCATGGATGCTTTGAAGCTGATGGTCCGCCATG
CCATCTCCACTTTTACGGAGCTCGTATTGGAGGCGCATGAGCGGGGGGAG
GTTGAGTTTGTGCAGATGCTCATTATTTCCGCGGCAGACGAGTTGGAGGT
CAGCCATGCGGAGGTAAAGGCACTGAAGGATCCGATGCTTTTGCTTGATA
TTTTACAGGCGAAGCATCACCACAACCCGTTTGCGTGGGGGGAGAGCTGC
TTGCTGTTGGGTGCCATGACAATGGGGAACCTCGATATGCAGGTGCTTTG
CCGAGGAGACGGCATGTGCATGATGCGTAGCATCGCTCAGCAGTGGGCTA
CGTTGGACCCTGTTGGGTTCCGCTTCTGGTACTCGAGGACGTACTCGAGG
ACGTTTGGCCAAGTCCTCGAGATGGGCTATGTGGATTTTGCCAAG back to top
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