jgi.p|Nanoce1779_2|670867, mRNA_4520 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670867
Unique Name	mRNA_4520
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1427
Alignment location	scaffold_10:802086..804170 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670953
Track	FilteredModels2
ProteinId	670867

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:802086..804170 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670867	gene_4520	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670867	mRNA_4520-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4520	CDS_4520	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:802086..804170-
coding sequence from alignment at scaffold_10:802086..804170-

mRNA sequence

>mRNA_4520 ID=mRNA_4520|Name=jgi.p|Nanoce1779_2|670867|organism=Nannochloropsis oceanica|type=mRNA|length=1427bp
CAGGTCCTGGACACCAGAGCTTCTTCCCACTGCCACAACACACCACAGCG
GCCGACAGCACCCCCACTTTCACCAGCATGACGACCAGTATGAGTGAGCC
AAGTCATGCCACGAACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGC
ACAACGAAGGCGTGAACGCTTACATCGGGTACAGCATCACCACCAACGCG
GACGACACCCGCGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCG
TTACTCCGACTTTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCG
GCACCATCCTGCCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGC
GCGAGTTTTGTGGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCG
AGTGGCGAAACACCCTGAATTAGGCGCATCGCGGGAGCTGGTCCTGTTCC
TTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGGAAGCGC
AGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACAAGCCTT
CACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACGTCACAG
TGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCCCGTGTC
CACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTCGGGCTG
GATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCGGACTGG
CATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAGGCGATC
CGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCTGGCGGC
CGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGTGGAGCC
GGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAAGCGAGG
AAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCACGTTAA
AGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATGCGGCGG
AGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAGGGGGAG
TACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATTTAGGGA
AGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAGAGGCGC
AGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCAATGCCG
AAGATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAGGCGGTCAA
ACCTGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCGGGTGGTG
TCAGTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAGGGGAACGA
GAGGAGGCAGCAGCGCCAAGAGTGTAG

protein sequence of jgi.p|Nanoce1779_2|670867

>mRNA_4520-protein ID=mRNA_4520-protein|Name=jgi.p|Nanoce1779_2|670867|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MTTSMSEPSHATNGLAIAVTDPTKHNEGVNAYIGYSITTNADDTREEFQA
PRTTVLRRYSDFHFLHAKLGHAFPGTILPPLPDKALVGRFGASFVEGRRR
ALERYLLRVAKHPELGASRELVLFLQADEATLQHAKEEWKRSQRNQPQKV
LKLFKQAFTQMEQSLSHAPTGHVTVPPSELDGRVDGIAARVHLLEVHYHS
VAREASGWIRGEKEAGDGCFQLGLALTLLGQNEAGGLGEAIRSAGHAIDG
VSAVALAAVEDGGVLLEEPLVEWSRAVGAAKVALLRRAEARKVYLESLVE
VATRLHVKGKWVGMIGKEEKLNAAELAWSKAVEVAEKKKGEYEEVSERLV
RDWGTFREEKAREVHRVLVAFAEAQVTRHEKMRKAWEEAMPKIRDVDVMH
ALDEKAVKPVTTASAAAAAAAAGGVSGEGGKEVGEKKEGEREEAAAPRV*

mRNA from alignment at scaffold_10:802086..804170-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4520 ID=mRNA_4520|Name=jgi.p|Nanoce1779_2|670867|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp|location=Sequence derived from alignment at scaffold_10:802086..804170- (Nannochloropsis oceanica)
CAGGTCCTGGACACCAGAGCTTCTTCCCACTGCCACAACACACCACAGCG
GCCGACAGCACCCCCACTTTCACCAGCATGACGACCAGTATGAGTGAGCC
AAGTCATGCCACGAGTAAGTGTTCCTGAGGTGAAGGAGTGGAGGGTGGAA
GGATGAACACCAGAGCCACACTGGCTGGCCCATTCTCGCTGATTTATACC
CTTCCTTTGTGTACATGCACGCGCGCGCTGTTCTAGAAACACCCGCACGC
ATGTGATTCAAAGTGTTCCTCTAGTACACATAGCTTCCTGCAACTGACGC
CTTGTCCTCAACCATCCAACCTATTTCCCACGTCCTACCCTCCGAAACAC
TAGACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGCACAACGAAGGC
GTGAACGCTTACATCGGGTACAGCATCACCACCAACGCGGACGACACCCG
CGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCGTTACTCCGACT
TTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCGGCACCATCCTG
CCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTGT
GGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCGAGTGGCGAAAC
ACCCTGAATTAGGTCAGTGGGCTTCTTTGGGCTTGTCAGTCGGTTTGTTT
GGTTTATCCCTCCCTCCCTCCCTCCCTCCCTCGCCTCCTTACCCTCCCCT
ATTCACTGACGAGGAACATGTTGTGGGCCGTTACAGAGGGCAAGCTTTTG
CGGCGTCAACATTATTCTCATTTGCCATCCTTGTTTTGTTCCTGTCCAAC
CCCTTTTCTCCCTCCCTTCTTCGCACCAGGCGCATCGCGGGAGCTGGTCC
TGTTCCTTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGG
AAGCGCAGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACA
AGCCTTCACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACG
TCACAGTGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCC
CGTGTCCACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTC
GGGCTGGATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCG
GACTGGCATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAG
GCGATCCGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCT
GGCGGCCGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGT
GGAGCCGGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAA
GCGAGGAAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCA
CGTTAAAGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATG
CGGCGGAGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAG
GGGGAGTACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATT
TAGGGAAGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAG
AGGCGCAGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCA
ATGCCGAAGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGAA
TGGAGCGGGGGAGGCCCCCCTATGGATATTTTCTTGGCTCATTTTGGATG
ACTCAACTCTATGTCTTTACACACTTTGTACCTTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTTCTTCCTCCCTCCTTTATACCCTCCTTCTCAT
TCTTCGTATAGATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAG
GCGGTCAAACCTGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGC
GGGTGGTGTCAGTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAG
GGGAACGAGAGGAGGCAGCAGCGCCAAGAGTGTAG

Coding sequence (CDS) from alignment at scaffold_10:802086..804170-

>mRNA_4520 ID=mRNA_4520|Name=jgi.p|Nanoce1779_2|670867|organism=Nannochloropsis oceanica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_10:802086..804170- (Nannochloropsis oceanica)
ATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAGGCGGTCAAACC
TGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCGGGTGGTGTCA
GTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAGGGGAACGAGAG
GAGGCAGCAGCGCCAAGAGTGTAGGCGCATCGCGGGAGCTGGTCCTGTTC
CTTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGGAAGCG
CAGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACAAGCCT
TCACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACGTCACA
GTGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCCCGTGT
CCACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTCGGGCT
GGATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCGGACTG
GCATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAGGCGAT
CCGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCTGGCGG
CCGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGTGGAGC
CGGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAAGCGAG
GAAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCACGTTA
AAGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATGCGGCG
GAGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAGGGGGA
GTACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATTTAGGG
AAGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAGAGGCG
CAGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCAATGCC
GAAGACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGCACAACGAAGG
CGTGAACGCTTACATCGGGTACAGCATCACCACCAACGCGGACGACACCC
GCGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCGTTACTCCGAC
TTTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCGGCACCATCCT
GCCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTG
TGGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCGAGTGGCGAAA
CACCCTGAATTAGATGACGACCAGTATGAGTGAGCCAAGTCATGCCACGA
ATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAGGCGGTCAAACC
TGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCGGGTGGTGTCA
GTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAGGGGAACGAGAG
GAGGCAGCAGCGCCAAGAGTGTAGGCGCATCGCGGGAGCTGGTCCTGTTC
CTTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGGAAGCG
CAGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACAAGCCT
TCACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACGTCACA
GTGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCCCGTGT
CCACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTCGGGCT
GGATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCGGACTG
GCATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAGGCGAT
CCGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCTGGCGG
CCGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGTGGAGC
CGGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAAGCGAG
GAAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCACGTTA
AAGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATGCGGCG
GAGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAGGGGGA
GTACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATTTAGGG
AAGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAGAGGCG
CAGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCAATGCC
GAAGACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGCACAACGAAGG
CGTGAACGCTTACATCGGGTACAGCATCACCACCAACGCGGACGACACCC
GCGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCGTTACTCCGAC
TTTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCGGCACCATCCT
GCCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTG
TGGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCGAGTGGCGAAA
CACCCTGAATTAGATGACGACCAGTATGAGTGAGCCAAGTCATGCCACGA
ATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAGGCGGTCAAACC
TGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCGGGTGGTGTCA
GTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAGGGGAACGAGAG
GAGGCAGCAGCGCCAAGAGTGTAGGCGCATCGCGGGAGCTGGTCCTGTTC
CTTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGGAAGCG
CAGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACAAGCCT
TCACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACGTCACA
GTGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCCCGTGT
CCACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTCGGGCT
GGATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCGGACTG
GCATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAGGCGAT
CCGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCTGGCGG
CCGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGTGGAGC
CGGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAAGCGAG
GAAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCACGTTA
AAGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATGCGGCG
GAGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAGGGGGA
GTACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATTTAGGG
AAGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAGAGGCG
CAGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCAATGCC
GAAGACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGCACAACGAAGG
CGTGAACGCTTACATCGGGTACAGCATCACCACCAACGCGGACGACACCC
GCGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCGTTACTCCGAC
TTTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCGGCACCATCCT
GCCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTG
TGGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCGAGTGGCGAAA
CACCCTGAATTAGATGACGACCAGTATGAGTGAGCCAAGTCATGCCACGA
ATCAGAGACGTGGATGTCATGCACGCCTTAGACGAAAAGGCGGTCAAACC
TGTCACCACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCGGGTGGTGTCA
GTGGAGAGGGAGGGAAGGAGGTGGGAGAAAAGAAGGAAGGGGAACGAGAG
GAGGCAGCAGCGCCAAGAGTGTAGGCGCATCGCGGGAGCTGGTCCTGTTC
CTTCAGGCCGACGAAGCCACCCTGCAACACGCTAAGGAGGAATGGAAGCG
CAGCCAGAGGAACCAACCGCAGAAAGTTCTCAAGCTCTTCAAACAAGCCT
TCACGCAAATGGAGCAATCCCTCTCCCATGCACCCACCGGGCACGTCACA
GTGCCGCCGTCGGAGCTGGACGGGCGGGTGGATGGCATTGCTGCCCGTGT
CCACCTCCTAGAAGTCCATTACCACAGTGTAGCGCGCGAGGCCTCGGGCT
GGATCCGGGGAGAAAAGGAGGCGGGCGACGGCTGTTTCCAGCTCGGACTG
GCATTGACGTTACTGGGGCAGAACGAAGCGGGAGGGCTGGGGGAGGCGAT
CCGATCCGCAGGGCACGCGATCGATGGGGTGAGTGCTGTTGCCCTGGCGG
CCGTGGAGGATGGAGGGGTATTGCTGGAGGAGCCGTTGGTAGAGTGGAGC
CGGGCGGTGGGTGCGGCCAAGGTGGCGTTGCTTCGACGGGCGGAAGCGAG
GAAGGTCTACCTGGAGTCCTTGGTGGAGGTGGCGACGCGGTTGCACGTTA
AAGGGAAATGGGTGGGGATGATAGGGAAGGAGGAGAAGCTGAATGCGGCG
GAGCTGGCGTGGAGCAAGGCGGTGGAGGTGGCGGAGAAGAAGAAGGGGGA
GTACGAGGAGGTTTCGGAGCGGCTGGTCAGGGATTGGGGTACATTTAGGG
AAGAGAAGGCGAGGGAGGTCCACCGTGTCCTTGTGGCCTTTGCAGAGGCG
CAGGTGACGAGGCACGAGAAGATGCGCAAGGCATGGGAGGAGGCAATGCC
GAAGACGGCCTAGCCATCGCCGTCACCGACCCCACTAAGCACAACGAAGG
CGTGAACGCTTACATCGGGTACAGCATCACCACCAACGCGGACGACACCC
GCGAAGAGTTCCAAGCTCCCCGCACGACCGTCCTGCGTCGTTACTCCGAC
TTTCATTTCCTCCACGCCAAGCTGGGCCATGCATTCCCCGGCACCATCCT
GCCCCCCCTGCCTGACAAAGCCCTGGTTGGGCGCTTTGGCGCGAGTTTTG
TGGAAGGTCGTCGGCGGGCCTTGGAACGATATTTACTGCGAGTGGCGAAA
CACCCTGAATTAGATGACGACCAGTATGAGTGAGCCAAGTCATGCCACGA

Synonyms

Publications