jgi.p|Nanoce1779_2|589405, mRNA_4519 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589405
Unique NamemRNA_4519
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length864
Alignment locationscaffold_10:800278..801539 +

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Properties
Property NameValue
TranscriptId589491
TrackFilteredModels2
ProteinId589405
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:800278..801539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589405gene_4519Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589405mRNA_4519-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4519CDS_4519Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4519 ID=mRNA_4519|Name=jgi.p|Nanoce1779_2|589405|organism=Nannochloropsis oceanica|type=mRNA|length=864bp
GCGACCGGGGGTGAAGGGGGCGAAAATAACAACAATGCTGCTCGAAAGAC
TTATTTGGGGGAACCCTTGGAGTTGACGCCCATGCCTTTTAATGCTTGCA
TGCTCGACACGGACACCATGCGGGTGACGGACACGAGTGACTTTACGACG
CGGATGCTTGTCACAGTGCAGCAATTGCGCAAGGAGGGGAAGAGCAGCTT
GTGGGCACGGGTACATGCACTCAACGGTCATTTGCTTGGGGTCCTTGGAA
CGTTTGGCTTCAAATGTCATCATTGTGAGCCGGATACAGTCGTGATGAAT
CTTTGGTTGCAGCCGGGGATGGAGAACAAGGTACCGCCTTATGCGACGCA
CTTGGTTGGAGTAGCAGGATTTTGCATGAATAAGAAGGACGAGGTGTTAC
TGGTCAAGGAAGGGAGCAAGGCCGTGAGCGGATGGAAGCTTCCAGGAGGT
TATGTGAATCCGGGCGAGGAATTCGGCGCTGCCGCCGTGAGGGAGGTCGA
GGAGGAGACAGGTGTCAGGTCCACGTTCCAAGGACTGCTGGCCATGCGGC
ACCAGCACAATCTTTCCTTCGGGGTTGACGACATTTATGTCGTCACGCAC
TTGGCCGCCGAAACGGACGAATTGCGACTGCGTTCGTCGGAGATAGAGGA
CGCCCGGTGGGTGCCGTTCGCGCAATTTCAAAAAGAGGCCTCCCACCCCA
TCTTGAAAACCGTGGCGGAGCTGATGAGAGGATCGGTGGGTGTGGAACGG
ACGATGGATACTGCCGTGATCGTCGAGAAAGAGCATCCTTCGATTTTGCC
GAACCGGCCGCCGTACAAGCTGTACCACGCGCCCATACCGGGAATGAAGT
GAGAAGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|589405

>mRNA_4519-protein ID=mRNA_4519-protein|Name=jgi.p|Nanoce1779_2|589405|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MPFNACMLDTDTMRVTDTSDFTTRMLVTVQQLRKEGKSSLWARVHALNGH
LLGVLGTFGFKCHHCEPDTVVMNLWLQPGMENKVPPYATHLVGVAGFCMN
KKDEVLLVKEGSKAVSGWKLPGGYVNPGEEFGAAAVREVEEETGVRSTFQ
GLLAMRHQHNLSFGVDDIYVVTHLAAETDELRLRSSEIEDARWVPFAQFQ
KEASHPILKTVAELMRGSVGVERTMDTAVIVEKEHPSILPNRPPYKLYHA
PIPGMK*
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mRNA from alignment at scaffold_10:800278..801539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4519 ID=mRNA_4519|Name=jgi.p|Nanoce1779_2|589405|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp|location=Sequence derived from alignment at scaffold_10:800278..801539+ (Nannochloropsis oceanica)
GCGACCGGGGGTGAAGGGGGCGAAAATAACAACAATGCTGCTCGAAAGAC
TTATTTGGGGGAACCCTTGGAGTTGACGCCCATGCCTTTTAATGCTTGCA
TGCTCGACACGGACACCATGCGGGTGACGGACACGAGTGACTTTACGACG
CGGATGCTTGTCACAGTGCAGCAATTGCGCAAGGAGGGGAAGAGCAGCTT
GTGGGCACGGGTACATGCACTCAACGGTCATTTGCTTGGGGTCCTTGGAA
CGTTTGGCTTCAAATGTCATCATTGTGAGCCGGATACAGTCGTGATGAAT
CTTTGGTTGCAGCCGGGGATGGAGAACAAGGTACCGCCTTATGCGACGCA
CTTGGTTGGAGTAGCAGGTAAGCTCTCGCTTTGGACGTGGAGGAAGGAAA
GAGAGGGGGAAGGAGGGAGGGGGAAAGGGATGCGACGCACTTGGTTGGAG
TAGCAGGTAAGCTCTCGCTTTGGAGGGGGAAAGGGAGGGAGATGAGAGAA
GTCTTATAGTGCGCTGTTTTTGGGCGACTTCGAAATCCTCCTCATCCTCC
TCCTCATCCTCCTCCCCCTCCTCAGCTGAACTTTTCCATCCTTTGCAAAC
CTATCCCACATCGTAATTCGCACACTCACCTCCAGGATTTTGCATGAATA
AGAAGGACGAGGTGTTACTGGTCAAGGAAGGGAGCAAGGCCGTGAGCGGA
TGGAAGCTTCCAGGAGGTTATGTGAATGTGAGGGATTCGTACAGCCACAT
TAATAGCTTGCTTGATTTATGACAGTGCCTTGTTCTTCGTACTTCATCAT
CATAATATTTCCCCAACCATCCTCATCCTCCATCCCACCCTCCCCTATCC
CCTCCAGCCGGGCGAGGAATTCGGCGCTGCCGCCGTGAGGGAGGTCGAGG
AGGAGACAGGTGTCAGGTCCACGTTCCAAGGACTGCTGGCCATGCGGCAC
CAGCACAATCTTTCCTTCGGGGTTGACGACATTTATGTCGTCACGCACTT
GGCCGCCGAAACGGACGAATTGCGACTGCGTTCGTCGGAGATAGAGGACG
CCCGGTGGGTGCCGTTCGCGCAATTTCAAAAAGAGGCCTCCCACCCCATC
TTGAAAACCGTGGCGGAGCTGATGAGAGGATCGGTGGGTGTGGAACGGAC
GATGGATACTGCCGTGATCGTCGAGAAAGAGCATCCTTCGATTTTGCCGA
ACCGGCCGCCGTACAAGCTGTACCACGCGCCCATACCGGGAATGAAGTGA
GAAGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_10:800278..801539+

>mRNA_4519 ID=mRNA_4519|Name=jgi.p|Nanoce1779_2|589405|organism=Nannochloropsis oceanica|type=CDS|length=2313bp|location=Sequence derived from alignment at scaffold_10:800278..801539+ (Nannochloropsis oceanica)
ATGCCTTTTAATGCTTGCATGCTCGACACGGACACCATGCGGGTGACGGA
CACGAGTGACTTTACGACGCGGATGCTTGTCACAGTGCAGCAATTGCGCA
AGGAGGGGAAGAGCAGCTTGTGGGCACGGGTACATGCACTCAACGGTCAT
TTGCTTGGGGTCCTTGGAACGTTTGGCTTCAAATGTCATCATTGTGAGCC
GGATACAGTCGTGATGAATCTTTGGTTGCAGCCGGGGATGGAGAACAAGG
TACCGCCTTATGCGACGCACTTGGTTGGAGTAGCAGGATTTTGCATGAAT
AAGAAGGACGAGGTGTTACTGGTCAAGGAAGGGAGCAAGGCCGTGAGCGG
ATGGAAGCTTCCAGGAGGTTATGTGAATCCGGGCGAGGAATTCGGCGCTG
CCGCCGTGAGGGAGGTCGAGGAGGAGACAGGTGTCAGGTCCACGTTCCAA
GGACTGCTGGCCATGCGGCACCAGCACAATCTTTCCTTCGGGGTTGACGA
CATTTATGTCGTCACGCACTTGGCCGCCGAAACGGACGAATTGCGACTGC
GTTCGTCGGAGATAGAGGACGCCCGGTGGGTGCCGTTCGCGCAATTTCAA
AAAGAGGCCTCCCACCCCATCTTGAAAACCGTGGCGGAGCTGATGAGAGG
ATCGGTGGGTGTGGAACGGACGATGGATACTGCCGTGATCGTCGAGAAAG
AGCATCCTTCGATTTTGCCGAACCGGCCGCCGTACAAGCTGTACCACGCG
CCCATACCGGGAATGAAGTGAATGCCTTTTAATGCTTGCATGCTCGACAC
GGACACCATGCGGGTGACGGACACGAGTGACTTTACGACGCGGATGCTTG
TCACAGTGCAGCAATTGCGCAAGGAGGGGAAGAGCAGCTTGTGGGCACGG
GTACATGCACTCAACGGTCATTTGCTTGGGGTCCTTGGAACGTTTGGCTT
CAAATGTCATCATTGTGAGCCGGATACAGTCGTGATGAATCTTTGGTTGC
AGCCGGGGATGGAGAACAAGGTACCGCCTTATGCGACGCACTTGGTTGGA
GTAGCAGGATTTTGCATGAATAAGAAGGACGAGGTGTTACTGGTCAAGGA
AGGGAGCAAGGCCGTGAGCGGATGGAAGCTTCCAGGAGGTTATGTGAATC
CGGGCGAGGAATTCGGCGCTGCCGCCGTGAGGGAGGTCGAGGAGGAGACA
GGTGTCAGGTCCACGTTCCAAGGACTGCTGGCCATGCGGCACCAGCACAA
TCTTTCCTTCGGGGTTGACGACATTTATGTCGTCACGCACTTGGCCGCCG
AAACGGACGAATTGCGACTGCGTTCGTCGGAGATAGAGGACGCCCGGTGG
GTGCCGTTCGCGCAATTTCAAAAAGAGGCCTCCCACCCCATCTTGAAAAC
CGTGGCGGAGCTGATGAGAGGATCGGTGGGTGTGGAACGGACGATGGATA
CTGCCGTGATCGTCGAGAAAGAGCATCCTTCGATTTTGCCGAACCGGCCG
CCGTACAAGCTGTACCACGCGCCCATACCGGGAATGAAGTGAATGCCTTT
TAATGCTTGCATGCTCGACACGGACACCATGCGGGTGACGGACACGAGTG
ACTTTACGACGCGGATGCTTGTCACAGTGCAGCAATTGCGCAAGGAGGGG
AAGAGCAGCTTGTGGGCACGGGTACATGCACTCAACGGTCATTTGCTTGG
GGTCCTTGGAACGTTTGGCTTCAAATGTCATCATTGTGAGCCGGATACAG
TCGTGATGAATCTTTGGTTGCAGCCGGGGATGGAGAACAAGGTACCGCCT
TATGCGACGCACTTGGTTGGAGTAGCAGGATTTTGCATGAATAAGAAGGA
CGAGGTGTTACTGGTCAAGGAAGGGAGCAAGGCCGTGAGCGGATGGAAGC
TTCCAGGAGGTTATGTGAATCCGGGCGAGGAATTCGGCGCTGCCGCCGTG
AGGGAGGTCGAGGAGGAGACAGGTGTCAGGTCCACGTTCCAAGGACTGCT
GGCCATGCGGCACCAGCACAATCTTTCCTTCGGGGTTGACGACATTTATG
TCGTCACGCACTTGGCCGCCGAAACGGACGAATTGCGACTGCGTTCGTCG
GAGATAGAGGACGCCCGGTGGGTGCCGTTCGCGCAATTTCAAAAAGAGGC
CTCCCACCCCATCTTGAAAACCGTGGCGGAGCTGATGAGAGGATCGGTGG
GTGTGGAACGGACGATGGATACTGCCGTGATCGTCGAGAAAGAGCATCCT
TCGATTTTGCCGAACCGGCCGCCGTACAAGCTGTACCACGCGCCCATACC
GGGAATGAAGTGA
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Synonyms
Publications