jgi.p|Nanoce1779_2|589402, mRNA_4518 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589402
Unique Name	mRNA_4518
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2206
Alignment location	scaffold_10:797573..799778 +

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Properties


Property Name	Value
TranscriptId	589488
Track	FilteredModels2
ProteinId	589402

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:797573..799778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589402	gene_4518	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589402	mRNA_4518-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4518	CDS_4518	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:797573..799778+
coding sequence from alignment at scaffold_10:797573..799778+

mRNA sequence

>mRNA_4518 ID=mRNA_4518|Name=jgi.p|Nanoce1779_2|589402|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp
CCACGGACCACGTCGCTCGAAAACCGTGTACGCGAACCCCCTCCTGCCCC
GGCACCTCTCCCGGTACCTCCCCCACTGCTCTTCAGCAAGCCATCGAACG
GATCGTCGTTGCCGCTGGTGCTGCTGGTGCTGCTGTTGTTGCCCCCCTTC
GCCTCTCCTCCCCCTCTTACTGGAGTGTTGGCAGCAGAGGATAAGCCGAT
CCCCGCGCTGGGTCCAGGCGATTTGGTGACACGGGGAGGGACGGCAAGAC
TGGTGCTGCTGCCACTAGTGGCGATAGGGGGCTTGAGAATTGCAGTGAAA
ACGTCGTCGGGACTGTTACTTATGGCGCTGCTGTTGCTGTTGAAACTGCT
GCTGTTAATGATGCCTACTTTGGTCGTCGTAATGGGAATCGGTGCAGTAA
AGGGGTTTTGCTGCTGCGGCTGCTGGAGAAATTCGGCGGGAAATGCATTG
GCTTTGGGAGGAGTGGACGACGGACTGGCCCCCGCGCTGTGTGGAAGAGA
GGGCTGCAGCGGCAAGTGCTGCTGCTGCGGTTGTTGCTGTTGTTGCTGTT
GCAGTTGCTGTTGAGACTGTTGCTGATCCTTCCCTCCCATGGGACCTGCC
CATCCTACATTTGCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCTGCCTCG
TAGATGTCCTACTTCCTCCGCCAGCCCCTCGCACTTCTCCTTCATCTTCT
CGAACCGCTTCTCAGTATCCACCCGCTTCCTCCTCTCCTCGTCGATCTTC
TCCTCCAACGCGCGATTCTTCTCCTGTAGCCTCTTCATCTGCAAGTCCAC
CTCCTTTCTTCTGCTCACCGCGGCCTCCACCTCAATCTTCATCTGCTCCA
ACAAATAGGTTAATTTCCCCGCCCCAATATCCTTCCCCGGTCCCGCCGAG
GAAGGCAGGGAGGAAGGAGCGTCATGGTGGTGATGCCCCGCCCCACTCTT
CATACCACTGCTCAAGTGGCCTGGTCCTCCTCCCGATCCCCCTCCTCCCC
CTCCCTTCTCACCCGTCCCGCCAGGCGTGGTCGCCACTCCCGGGGTGGTG
GGAGGGTGGGAGGGAGGGTGGGAAGGAGGGTGGAACGACCGTTCCATGTG
CGCTAGTCTTGACAAAATCATCTCGTTCTGTTGCCGCAAAAGTCGAAAAT
ACTCGGGTTCGTGGACCGAGAGAGACGATGCACTTCCTGATGGTCCTATC
CCCGTATCGTGTAAAGACGTTGAGGAAGCGAATTGGAAATGGGGAGCATA
AGTCCCTCCACTGGCACTCATTCCGGGCGAGGCATCCTGCTGCTGCTGTC
CACGATGTCCATGACCAGTCTCTCCGCTTCCCTCCAGGTGCAACGCAGAC
GAAGAAGATCGGAGGGAGCTCCCTCCTACTCCTCCCCCTCCTCCTCCTGA
GGTATGTGCTATATCGAGATGCTGCGCCGATGAAGCACGCATTAAGGAGT
GGTGGTGCGTGTGTTGATGATGCGGCGAATGATGGTGTCCTCCATGAGGG
TGGGGAGGAGGGCGGGAGTGTGGGTGTCCATGAATGGTGTGATTACCGCC
ATGCCCGCCCTGGTTGGAGGTTTGGTGTGGGTGCTGCTGGAGATGATGAG
GATGCTGCGAGTGGTGGCCAGGCGGGTGCCCTTCCATGTGATGAATAGGG
GTTGATACTCCTGAGCCCTCCAAAGCTATTTCGGGGAGCTCGCGAACGGT
GAAGCGTCCTTTCTTTTCCCCCCCCATCTTGCTCGACTTTCCCAGAGAAT
CCGTTAAATCTGAGACAGTGCTCATGTCCACGGTACCCATGCGGTGCGAG
GACAGGTGTACTTGGGGAGCGCCAGATGATGATGTTTCATGCTGATGCTG
GTGATGGGAGGAGGAGGAGTGCGGGCGGTCGAAGCCTTTGATTCTTCCTC
CTAATATGTCACCCTCAGGGTAAGACGCTTCCTCAGCCTCGGCTGCCTCC
ACCTGCTTGACCCGAAACCGGCCCTTGCGCTCCGCGAGCAAGCCGCTCCC
TCCTCCTCCCTGCTGGTGCTCAGATGGGGCGTTGGTGGTGCCGGCAGCGA
TGGTGGAGGCAGCGGAGGAAGACGCCAAAGACGTAGACACAGCTTCCGAC
ATGATGAGCGAAGGAAGGAGGAGGATGGTGGGGAGTGATTTGCTCTCTAC
ACAGGTAGCCTGACCTAAGATAATGCGAATCGCGGTGAGACGCCCACCTG
TATGCT

protein sequence of jgi.p|Nanoce1779_2|589402

>mRNA_4518-protein ID=mRNA_4518-protein|Name=jgi.p|Nanoce1779_2|589402|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MHWLWEEWTTDWPPRCVEERAAAASAAAAVVAVVAVAVAVETVADPSLPW
DLPILHLLLLRRRRRRRCLVDVLLPPPAPRTSPSSSRTASQYPPASSSPR
RSSPPTRDSSPVASSSASPPPFFCSPRPPPQSSSAPTNRLISPPQYPSPV
PPRKAGRKERHGGDAPPHSSYHCSSGLVLLPIPLLPLPSHPSRQAWSPLP
GWWEGGREGGKEGGTTVPCALVLTKSSRSVAAKVENTRVRGPRETMHFLM
VLSPYRVKTLRKRIGNGEHKSLHWHSFRARHPAAAVHDVHDQSLRFPPGA
TQTKKIGGSSLLLLPLLLLRYVLYRDAAPMKHALRSGGACVDDAANDGVL
HEGGEEGGSVGVHEWCDYRHARPGWRFGVGAAGDDEDAASGGQAGALPCD
E*

mRNA from alignment at scaffold_10:797573..799778+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4518 ID=mRNA_4518|Name=jgi.p|Nanoce1779_2|589402|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at scaffold_10:797573..799778+ (Nannochloropsis oceanica)
CCACGGACCACGTCGCTCGAAAACCGTGTACGCGAACCCCCTCCTGCCCC
GGCACCTCTCCCGGTACCTCCCCCACTGCTCTTCAGCAAGCCATCGAACG
GATCGTCGTTGCCGCTGGTGCTGCTGGTGCTGCTGTTGTTGCCCCCCTTC
GCCTCTCCTCCCCCTCTTACTGGAGTGTTGGCAGCAGAGGATAAGCCGAT
CCCCGCGCTGGGTCCAGGCGATTTGGTGACACGGGGAGGGACGGCAAGAC
TGGTGCTGCTGCCACTAGTGGCGATAGGGGGCTTGAGAATTGCAGTGAAA
ACGTCGTCGGGACTGTTACTTATGGCGCTGCTGTTGCTGTTGAAACTGCT
GCTGTTAATGATGCCTACTTTGGTCGTCGTAATGGGAATCGGTGCAGTAA
AGGGGTTTTGCTGCTGCGGCTGCTGGAGAAATTCGGCGGGAAATGCATTG
GCTTTGGGAGGAGTGGACGACGGACTGGCCCCCGCGCTGTGTGGAAGAGA
GGGCTGCAGCGGCAAGTGCTGCTGCTGCGGTTGTTGCTGTTGTTGCTGTT
GCAGTTGCTGTTGAGACTGTTGCTGATCCTTCCCTCCCATGGGACCTGCC
CATCCTACATTTGCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCTGCCTCG
TAGATGTCCTACTTCCTCCGCCAGCCCCTCGCACTTCTCCTTCATCTTCT
CGAACCGCTTCTCAGTATCCACCCGCTTCCTCCTCTCCTCGTCGATCTTC
TCCTCCAACGCGCGATTCTTCTCCTGTAGCCTCTTCATCTGCAAGTCCAC
CTCCTTTCTTCTGCTCACCGCGGCCTCCACCTCAATCTTCATCTGCTCCA
ACAAATAGGTTAATTTCCCCGCCCCAATATCCTTCCCCGGTCCCGCCGAG
GAAGGCAGGGAGGAAGGAGCGTCATGGTGGTGATGCCCCGCCCCACTCTT
CATACCACTGCTCAAGTGGCCTGGTCCTCCTCCCGATCCCCCTCCTCCCC
CTCCCTTCTCACCCGTCCCGCCAGGCGTGGTCGCCACTCCCGGGGTGGTG
GGAGGGTGGGAGGGAGGGTGGGAAGGAGGGTGGAACGACCGTTCCATGTG
CGCTAGTCTTGACAAAATCATCTCGTTCTGTTGCCGCAAAAGTCGAAAAT
ACTCGGGTTCGTGGACCGAGAGAGACGATGCACTTCCTGATGGTCCTATC
CCCGTATCGTGTAAAGACGTTGAGGAAGCGAATTGGAAATGGGGAGCATA
AGTCCCTCCACTGGCACTCATTCCGGGCGAGGCATCCTGCTGCTGCTGTC
CACGATGTCCATGACCAGTCTCTCCGCTTCCCTCCAGGTGCAACGCAGAC
GAAGAAGATCGGAGGGAGCTCCCTCCTACTCCTCCCCCTCCTCCTCCTGA
GGTATGTGCTATATCGAGATGCTGCGCCGATGAAGCACGCATTAAGGAGT
GGTGGTGCGTGTGTTGATGATGCGGCGAATGATGGTGTCCTCCATGAGGG
TGGGGAGGAGGGCGGGAGTGTGGGTGTCCATGAATGGTGTGATTACCGCC
ATGCCCGCCCTGGTTGGAGGTTTGGTGTGGGTGCTGCTGGAGATGATGAG
GATGCTGCGAGTGGTGGCCAGGCGGGTGCCCTTCCATGTGATGAATAGGG
GTTGATACTCCTGAGCCCTCCAAAGCTATTTCGGGGAGCTCGCGAACGGT
GAAGCGTCCTTTCTTTTCCCCCCCCATCTTGCTCGACTTTCCCAGAGAAT
CCGTTAAATCTGAGACAGTGCTCATGTCCACGGTACCCATGCGGTGCGAG
GACAGGTGTACTTGGGGAGCGCCAGATGATGATGTTTCATGCTGATGCTG
GTGATGGGAGGAGGAGGAGTGCGGGCGGTCGAAGCCTTTGATTCTTCCTC
CTAATATGTCACCCTCAGGGTAAGACGCTTCCTCAGCCTCGGCTGCCTCC
ACCTGCTTGACCCGAAACCGGCCCTTGCGCTCCGCGAGCAAGCCGCTCCC
TCCTCCTCCCTGCTGGTGCTCAGATGGGGCGTTGGTGGTGCCGGCAGCGA
TGGTGGAGGCAGCGGAGGAAGACGCCAAAGACGTAGACACAGCTTCCGAC
ATGATGAGCGAAGGAAGGAGGAGGATGGTGGGGAGTGATTTGCTCTCTAC
ACAGGTAGCCTGACCTAAGATAATGCGAATCGCGGTGAGACGCCCACCTG
TATGCT

Coding sequence (CDS) from alignment at scaffold_10:797573..799778+

>mRNA_4518 ID=mRNA_4518|Name=jgi.p|Nanoce1779_2|589402|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_10:797573..799778+ (Nannochloropsis oceanica)
ATGCATTGGCTTTGGGAGGAGTGGACGACGGACTGGCCCCCGCGCTGTGT
GGAAGAGAGGGCTGCAGCGGCAAGTGCTGCTGCTGCGGTTGTTGCTGTTG
TTGCTGTTGCAGTTGCTGTTGAGACTGTTGCTGATCCTTCCCTCCCATGG
GACCTGCCCATCCTACATTTGCTCCTCCTCCGCCGCCGCCGCCGCCGCCG
CTGCCTCGTAGATGTCCTACTTCCTCCGCCAGCCCCTCGCACTTCTCCTT
CATCTTCTCGAACCGCTTCTCAGTATCCACCCGCTTCCTCCTCTCCTCGT
CGATCTTCTCCTCCAACGCGCGATTCTTCTCCTGTAGCCTCTTCATCTGC
AAGTCCACCTCCTTTCTTCTGCTCACCGCGGCCTCCACCTCAATCTTCAT
CTGCTCCAACAAATAGGTTAATTTCCCCGCCCCAATATCCTTCCCCGGTC
CCGCCGAGGAAGGCAGGGAGGAAGGAGCGTCATGGTGGTGATGCCCCGCC
CCACTCTTCATACCACTGCTCAAGTGGCCTGGTCCTCCTCCCGATCCCCC
TCCTCCCCCTCCCTTCTCACCCGTCCCGCCAGGCGTGGTCGCCACTCCCG
GGGTGGTGGGAGGGTGGGAGGGAGGGTGGGAAGGAGGGTGGAACGACCGT
TCCATGTGCGCTAGTCTTGACAAAATCATCTCGTTCTGTTGCCGCAAAAG
TCGAAAATACTCGGGTTCGTGGACCGAGAGAGACGATGCACTTCCTGATG
GTCCTATCCCCGTATCGTGTAAAGACGTTGAGGAAGCGAATTGGAAATGG
GGAGCATAAGTCCCTCCACTGGCACTCATTCCGGGCGAGGCATCCTGCTG
CTGCTGTCCACGATGTCCATGACCAGTCTCTCCGCTTCCCTCCAGGTGCA
ACGCAGACGAAGAAGATCGGAGGGAGCTCCCTCCTACTCCTCCCCCTCCT
CCTCCTGAGGTATGTGCTATATCGAGATGCTGCGCCGATGAAGCACGCAT
TAAGGAGTGGTGGTGCGTGTGTTGATGATGCGGCGAATGATGGTGTCCTC
CATGAGGGTGGGGAGGAGGGCGGGAGTGTGGGTGTCCATGAATGGTGTGA
TTACCGCCATGCCCGCCCTGGTTGGAGGTTTGGTGTGGGTGCTGCTGGAG
ATGATGAGGATGCTGCGAGTGGTGGCCAGGCGGGTGCCCTTCCATGTGAT
GAATAG

Synonyms

Publications