jgi.p|Nanoce1779_2|26035, mRNA_4516 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|26035
Unique Name	mRNA_4516
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1325
Alignment location	scaffold_10:788718..790635 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	26121
Track	FilteredModels2
ProteinId	26035

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:788718..790635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26035	gene_4516	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26035	mRNA_4516-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4516	CDS_4516	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:788718..790635+
coding sequence from alignment at scaffold_10:788718..790635+

mRNA sequence

>mRNA_4516 ID=mRNA_4516|Name=jgi.p|Nanoce1779_2|26035|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp
GTCAAAAATGGTCCGCACCCTCGCCTTGCTTTTGCCATTTTACCTATCAT
CAACCCCCAGACGCCACAATCTGTCTTTTAAAATCATAGTACCAGTACTA
TTGATGGTCGAAAAATTATATGGAGAATGACCCCAAGACAGCTATCGTGG
TGCCTGTTAGCCTGTTAAATGGATACATCGCTGCCCGAGGAAGGGCCAGC
TACAGAGACCGGAGAGCTTCTGCATGCAAGGCGCCGTCAATCGCTTCGGA
TGATGGTGGCTATGAGCCTGAACCAGTCCTGCAAGGATGCCATTCAAGAC
ATCCTCCTCCCCTCGTCGGACTACCTCGACAACAGATCCGACCCGAATAA
CAAATTTCGGGAGCTCCTGATTAAGGCCAAGGAATCAGGTCTGACATGGG
ACGACACGTTCTCGCACTTCACTTCCGCACCTGAGACTACGGCCGCCATT
TCACAGAAGGACTTCGCCGCGGGCCTTCAAAAACTCAGCTCCAACACCTC
CTGCGACGTGACACAGGCGGACATCGAGCAGCTGACAAAGAGCCTTATGA
TAGAGGAAACGAAGCAGGTCTCTCTGGACGGGATTAAGGCTTTTGCCCTG
GCGATCCCGCACGTGTCCTGGAAGGTAGAACGCATCCGTCGTCTCTCCTC
AGCCTTGTCGACTGAGGAGGGCACAAGCACTGGCAACTGCATCCCTGAAC
AGGCACCCAAGACTCAAATCAAGAAGAAAACATCGACCACTAAGCCTTCT
CCGCCGGCTGTCGCCTCTAAGATGACTTCCGCACGCTCACTCTCGCGTCG
GGAATCGTCCACATCAACAGGCAAAGTAGCCTTCTCCAGCAGTGTCCCGG
CTATGCGGAGGAGCCGGAGCCGCATGTCCTCTTCTGCTTCTATACCAGAT
TCTGTTTTGGCAGGGGCTTGTCGTCCGCTTCCTCGCAAAAGCAGCAGCAA
AACCACCCCGGAATCTGTTCTTCAAAAGAACAGCGGCAAAACTATTCCGG
AACCTGTGCCGCTGTATTCCAAGGTTGCTTCAACCACAGCGCCTAACCCT
TTGCTTGTCGATGTACGTAGCTGTACGTGCATGCGACAGCGCTCATCGCA
CAATCACAGTATTAATTTCATACATGACATGTCTGAACTAGGAGCTGGCA
TACACACCTTTGGTCAGCCTCGGGTTGATCGCAACCTGCTCGAAATTTCT
GTGGCGGCAACAAGAAAATCTTCTCATCTATCTACATAGCCATGACACCC
CCCCTCGCATAATTGCCATCGTAGCACTCAACGAAACTACACAAGAGGAA
TATCCGCCTATATACGTCAACCGCG

protein sequence of jgi.p|Nanoce1779_2|26035

>mRNA_4516-protein ID=mRNA_4516-protein|Name=jgi.p|Nanoce1779_2|26035|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MDTSLPEEGPATETGELLHARRRQSLRMMVAMSLNQSCKDAIQDILLPSS
DYLDNRSDPNNKFRELLIKAKESGLTWDDTFSHFTSAPETTAAISQKDFA
AGLQKLSSNTSCDVTQADIEQLTKSLMIEETKQVSLDGIKAFALAIPHVS
WKVERIRRLSSALSTEEGTSTGNCIPEQAPKTQIKKKTSTTKPSPPAVAS
KMTSARSLSRRESSTSTGKVAFSSSVPAMRRSRSRMSSSASIPDSVLAGA
CRPLPRKSSSKTTPESVLQKNSGKTIPEPVPLYSKVASTTAPNPLLVDVR
SCTCMRQRSSHNHSINFIHDMSELGAGIHTFGQPRVDRNLLEISVAATRK
SSHLST*

mRNA from alignment at scaffold_10:788718..790635+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4516 ID=mRNA_4516|Name=jgi.p|Nanoce1779_2|26035|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp|location=Sequence derived from alignment at scaffold_10:788718..790635+ (Nannochloropsis oceanica)
GTCAAAAATGGTCCGCACCCTCGCCTTGCTTTTGCCATTTTACCTATCAT
CAACCCCCAGACGCCACAATCTGTCTTTTAAAATCATAGTACCAGTACTA
TTGATGGTCGAAAAATTATATGGAGAATGGTATTGAGGTCAGGGAGTGTA
TGATTTTTGCTTGGAAAAGAAAATGGAAGCAGCCATGCTTTTTCCAATTT
TCATAGCTCATCTTGCCACTTTTATCCGCCATAAGACCCCAAGACAGCTA
TCGTGGTGCCTGTTAGCCTGTTAAATGGATACATCGCTGCCCGAGGAAGG
GCCAGCTACAGAGACCGGAGAGCTTCTGCATGCAAGGCGCCGTCAATCGC
TTCGGATGATGGTGGCTATGAGCCTGAACCAGTCCTGCAAGGATGCCATT
CAAGACATCCTCCTCCCCTCGTCGGACTACCTCGACAACAGATGTAGGTA
AATATGCCGTGATAGCTGGTCCTATCTTCCTGGCAGAGTATTGGCTCAGA
GTTTTCCCTTGCCACCGAACAATTTTCACGAATACCTCTTGCCCCCTCTC
ACCTCGCACACCCATCGCAGCCGACCCGAATAACAAATTTCGGGAGCTCC
TGATTAAGGCCAAGGAATCAGGTCTGACATGGGACGACACGTTCTCGCAC
TTCACTTCCGCACCTGAGACTACGGCCGCCATTTCACAGAAGGACTTCGC
CGCGGGCCTTCAAAAACTCAGCTCCAACACCTCCTGCGACGTGACACAGG
TAGGTATAAAAGGCAATGGCGGCAGATTAAGTGTTTTGGAAATATTGGAT
GATGAGTGTGCTCCAAACGTCACGGCCACGCTATTTCGTCGGTTTTCAAG
AGCTCCCCTTTGCCTCAGACTGTGTGGACAAGGTGACGGATTGTCATGAC
ACTTTCTCATGTCTCTACCCTCTTACACTAAATAGGCGGACATCGAGCAG
CTGACAAAGAGCCTTATGATAGAGGAAACGAAGCAGGTCTCTCTGGACGG
GATTAAGGCTTTTGCCCTGGCGATCCCGCACGTGTCCTGGAAGGTAGAAC
GCATCCGTCGTCTCTCCTCAGCCTTGTCGACTGAGGAGGGCACAAGCACT
GGCAACTGCATCCCTGAACAGGTAATTTTACTGTTTCCTAGTATATTAAA
GAAAGTATGTCGAGCTTTTGATAGCTCATGCCAGCATTATAATCTTTTCT
CGTGCAGGCACCCAAGACTCAAATCAAGAAGAAAACATCGACCACTAAGC
CTTCTCCGCCGGCTGTCGCCTCTAAGATGACTTCCGCACGCTCACTCTCG
CGTCGGGAATCGTCCACATCAACAGGCAAAGTAGCCTTCTCCAGCAGTGT
CCCGGCTATGCGGAGGAGCCGGAGCCGCATGTCCTCTTCTGCTTCTATAC
CAGATTCTGTTTTGGCAGGGGCTTGTCGTCCGCTTCCTCGCAAAAGCAGC
AGCAAAACCACCCCGGAATCTGTTCTTCAAAAGAACAGCGGCAAAACTAT
TCCGGAACCTGTGCCGCTGTATTCCAAGGTTGCTTCAACCACAGCGCCTA
ACCCTTTGCTTGTCGATGTACGTAGCTGTACGTGCATGCGACAGCGCTCA
TCGCACAATCACAGTATTAATTTCATACATGACATGTCTGAACTAGGAGC
TGGCATACACACCTTTGGTCAGCCTCGGGTTGATCGCAACCTGCTCGAAA
TTTCTGTGGCGGCAACAAGAAAATCTTCTCATCTATCTACATAGCCATGA
CACCCCCCCTCGCATAATTGCCATCGTAGCACTCAACGAAACTACACAAG
AGGTAAGAGTTTTCTTCCGCGCACGGTAAAGAGAACAATATACATCTGGC
TAGCGGGCTTGTTTATTTTCTTTTTTCTATCTATGAATAGGAATATCCGC
CTATATACGTCAACCGCG

Coding sequence (CDS) from alignment at scaffold_10:788718..790635+

>mRNA_4516 ID=mRNA_4516|Name=jgi.p|Nanoce1779_2|26035|organism=Nannochloropsis oceanica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_10:788718..790635+ (Nannochloropsis oceanica)
ATGGATACATCGCTGCCCGAGGAAGGGCCAGCTACAGAGACCGGAGAGCT
TCTGCATGCAAGGCGCCGTCAATCGCTTCGGATGATGGTGGCTATGAGCC
TGAACCAGTCCTGCAAGGATGCCATTCAAGACATCCTCCTCCCCTCGTCG
GACTACCTCGACAACAGATCCGACCCGAATAACAAATTTCGGGAGCTCCT
GATTAAGGCCAAGGAATCAGGTCTGACATGGGACGACACGTTCTCGCACT
TCACTTCCGCACCTGAGACTACGGCCGCCATTTCACAGAAGGACTTCGCC
GCGGGCCTTCAAAAACTCAGCTCCAACACCTCCTGCGACGTGACACAGGC
GGACATCGAGCAGCTGACAAAGAGCCTTATGATAGAGGAAACGAAGCAGG
TCTCTCTGGACGGGATTAAGGCTTTTGCCCTGGCGATCCCGCACGTGTCC
TGGAAGGTAGAACGCATCCGTCGTCTCTCCTCAGCCTTGTCGACTGAGGA
GGGCACAAGCACTGGCAACTGCATCCCTGAACAGGCACCCAAGACTCAAA
TCAAGAAGAAAACATCGACCACTAAGCCTTCTCCGCCGGCTGTCGCCTCT
AAGATGACTTCCGCACGCTCACTCTCGCGTCGGGAATCGTCCACATCAAC
AGGCAAAGTAGCCTTCTCCAGCAGTGTCCCGGCTATGCGGAGGAGCCGGA
GCCGCATGTCCTCTTCTGCTTCTATACCAGATTCTGTTTTGGCAGGGGCT
TGTCGTCCGCTTCCTCGCAAAAGCAGCAGCAAAACCACCCCGGAATCTGT
TCTTCAAAAGAACAGCGGCAAAACTATTCCGGAACCTGTGCCGCTGTATT
CCAAGGTTGCTTCAACCACAGCGCCTAACCCTTTGCTTGTCGATGTACGT
AGCTGTACGTGCATGCGACAGCGCTCATCGCACAATCACAGTATTAATTT
CATACATGACATGTCTGAACTAGGAGCTGGCATACACACCTTTGGTCAGC
CTCGGGTTGATCGCAACCTGCTCGAAATTTCTGTGGCGGCAACAAGAAAA
TCTTCTCATCTATCTACATAGATGGATACATCGCTGCCCGAGGAAGGGCC
AGCTACAGAGACCGGAGAGCTTCTGCATGCAAGGCGCCGTCAATCGCTTC
GGATGATGGTGGCTATGAGCCTGAACCAGTCCTGCAAGGATGCCATTCAA
GACATCCTCCTCCCCTCGTCGGACTACCTCGACAACAGATCCGACCCGAA
TAACAAATTTCGGGAGCTCCTGATTAAGGCCAAGGAATCAGGTCTGACAT
GGGACGACACGTTCTCGCACTTCACTTCCGCACCTGAGACTACGGCCGCC
ATTTCACAGAAGGACTTCGCCGCGGGCCTTCAAAAACTCAGCTCCAACAC
CTCCTGCGACGTGACACAGGCGGACATCGAGCAGCTGACAAAGAGCCTTA
TGATAGAGGAAACGAAGCAGGTCTCTCTGGACGGGATTAAGGCTTTTGCC
CTGGCGATCCCGCACGTGTCCTGGAAGGTAGAACGCATCCGTCGTCTCTC
CTCAGCCTTGTCGACTGAGGAGGGCACAAGCACTGGCAACTGCATCCCTG
AACAGGCACCCAAGACTCAAATCAAGAAGAAAACATCGACCACTAAGCCT
TCTCCGCCGGCTGTCGCCTCTAAGATGACTTCCGCACGCTCACTCTCGCG
TCGGGAATCGTCCACATCAACAGGCAAAGTAGCCTTCTCCAGCAGTGTCC
CGGCTATGCGGAGGAGCCGGAGCCGCATGTCCTCTTCTGCTTCTATACCA
GATTCTGTTTTGGCAGGGGCTTGTCGTCCGCTTCCTCGCAAAAGCAGCAG
CAAAACCACCCCGGAATCTGTTCTTCAAAAGAACAGCGGCAAAACTATTC
CGGAACCTGTGCCGCTGTATTCCAAGGTTGCTTCAACCACAGCGCCTAAC
CCTTTGCTTGTCGATGTACGTAGCTGTACGTGCATGCGACAGCGCTCATC
GCACAATCACAGTATTAATTTCATACATGACATGTCTGAACTAGGAGCTG
GCATACACACCTTTGGTCAGCCTCGGGTTGATCGCAACCTGCTCGAAATT
TCTGTGGCGGCAACAAGAAAATCTTCTCATCTATCTACATAGATGGATAC
ATCGCTGCCCGAGGAAGGGCCAGCTACAGAGACCGGAGAGCTTCTGCATG
CAAGGCGCCGTCAATCGCTTCGGATGATGGTGGCTATGAGCCTGAACCAG
TCCTGCAAGGATGCCATTCAAGACATCCTCCTCCCCTCGTCGGACTACCT
CGACAACAGATCCGACCCGAATAACAAATTTCGGGAGCTCCTGATTAAGG
CCAAGGAATCAGGTCTGACATGGGACGACACGTTCTCGCACTTCACTTCC
GCACCTGAGACTACGGCCGCCATTTCACAGAAGGACTTCGCCGCGGGCCT
TCAAAAACTCAGCTCCAACACCTCCTGCGACGTGACACAGGCGGACATCG
AGCAGCTGACAAAGAGCCTTATGATAGAGGAAACGAAGCAGGTCTCTCTG
GACGGGATTAAGGCTTTTGCCCTGGCGATCCCGCACGTGTCCTGGAAGGT
AGAACGCATCCGTCGTCTCTCCTCAGCCTTGTCGACTGAGGAGGGCACAA
GCACTGGCAACTGCATCCCTGAACAGGCACCCAAGACTCAAATCAAGAAG
AAAACATCGACCACTAAGCCTTCTCCGCCGGCTGTCGCCTCTAAGATGAC
TTCCGCACGCTCACTCTCGCGTCGGGAATCGTCCACATCAACAGGCAAAG
TAGCCTTCTCCAGCAGTGTCCCGGCTATGCGGAGGAGCCGGAGCCGCATG
TCCTCTTCTGCTTCTATACCAGATTCTGTTTTGGCAGGGGCTTGTCGTCC
GCTTCCTCGCAAAAGCAGCAGCAAAACCACCCCGGAATCTGTTCTTCAAA
AGAACAGCGGCAAAACTATTCCGGAACCTGTGCCGCTGTATTCCAAGGTT
GCTTCAACCACAGCGCCTAACCCTTTGCTTGTCGATGTACGTAGCTGTAC
GTGCATGCGACAGCGCTCATCGCACAATCACAGTATTAATTTCATACATG
ACATGTCTGAACTAGGAGCTGGCATACACACCTTTGGTCAGCCTCGGGTT
GATCGCAACCTGCTCGAAATTTCTGTGGCGGCAACAAGAAAATCTTCTCA
TCTATCTACATAGATGGATACATCGCTGCCCGAGGAAGGGCCAGCTACAG
AGACCGGAGAGCTTCTGCATGCAAGGCGCCGTCAATCGCTTCGGATGATG
GTGGCTATGAGCCTGAACCAGTCCTGCAAGGATGCCATTCAAGACATCCT
CCTCCCCTCGTCGGACTACCTCGACAACAGATCCGACCCGAATAACAAAT
TTCGGGAGCTCCTGATTAAGGCCAAGGAATCAGGTCTGACATGGGACGAC
ACGTTCTCGCACTTCACTTCCGCACCTGAGACTACGGCCGCCATTTCACA
GAAGGACTTCGCCGCGGGCCTTCAAAAACTCAGCTCCAACACCTCCTGCG
ACGTGACACAGGCGGACATCGAGCAGCTGACAAAGAGCCTTATGATAGAG
GAAACGAAGCAGGTCTCTCTGGACGGGATTAAGGCTTTTGCCCTGGCGAT
CCCGCACGTGTCCTGGAAGGTAGAACGCATCCGTCGTCTCTCCTCAGCCT
TGTCGACTGAGGAGGGCACAAGCACTGGCAACTGCATCCCTGAACAGGCA
CCCAAGACTCAAATCAAGAAGAAAACATCGACCACTAAGCCTTCTCCGCC
GGCTGTCGCCTCTAAGATGACTTCCGCACGCTCACTCTCGCGTCGGGAAT
CGTCCACATCAACAGGCAAAGTAGCCTTCTCCAGCAGTGTCCCGGCTATG
CGGAGGAGCCGGAGCCGCATGTCCTCTTCTGCTTCTATACCAGATTCTGT
TTTGGCAGGGGCTTGTCGTCCGCTTCCTCGCAAAAGCAGCAGCAAAACCA
CCCCGGAATCTGTTCTTCAAAAGAACAGCGGCAAAACTATTCCGGAACCT
GTGCCGCTGTATTCCAAGGTTGCTTCAACCACAGCGCCTAACCCTTTGCT
TGTCGATGTACGTAGCTGTACGTGCATGCGACAGCGCTCATCGCACAATC
ACAGTATTAATTTCATACATGACATGTCTGAACTAGGAGCTGGCATACAC
ACCTTTGGTCAGCCTCGGGTTGATCGCAACCTGCTCGAAATTTCTGTGGC
GGCAACAAGAAAATCTTCTCATCTATCTACATAG

Synonyms

Publications