jgi.p|Nanoce1779_2|589384, mRNA_4515 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589384
Unique NamemRNA_4515
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length933
Alignment locationscaffold_10:787123..788340 +

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Properties
Property NameValue
TranscriptId589470
TrackFilteredModels2
ProteinId589384
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:787123..788340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589384gene_4515Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589384mRNA_4515-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4515CDS_4515Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4515 ID=mRNA_4515|Name=jgi.p|Nanoce1779_2|589384|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ACAGCAGCAGCACCACCACCACCACTTCTTAAGTATGAAGACCGCCGCTC
TCCTCACTGTCTCCACCCTTATGGGCGCCCAGGCCTTCATGGCCCCCGCC
CCCAAGTTCTCCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGACGA
GGCCGGCGTGACGGGCCCCTTGGGCTACTGGGACCCCCTTGGCTTCTCCG
CCGACGGGGATGTCGAGAAGTTTAACAAGTACCGCGCCGCCGAGATCAAG
CACGGCCGAGTTGCCATGCTTGCCATGCTCCACACCCTGGTGACCGGCCT
TGGCGTGAAGCTGCCGGGCCTCGTGGCCGCTGGCGACGGAATCCCCCAGT
CCATGCCCTACGGCATTGGCGCTGTCACCTCCGGTGCTTGGGCCGCTCAG
GGCTGGGCGCAGGTGCTCCTGTTCGCGGCCGCCCTCGAGGTGCTTGCCCC
CCAGAAGGAGGACAAGATCCCCGGGGATGTGCAGCCCGACACCTCTGCCT
TCGCCAAGCTGGACGAGAAGTCCGAGGAGGAGGCACTGGCCTACCAGAAC
AAGGAGCTCAACAACGGCCGCTTGGCGATGGTCTCGTGGCTCGGAGCCGT
CGTGGGCGCTAGCCTCACCGGTGGCGAGGACCCCGTCGCCACCCTCCTCC
ACAAGCTCGGTAACTAAGCCGCAGCCTTTCATCTGGAATCTGCTTTGGTC
AGAATGTCTCGTGGGAGAGGGTTTGGCCCTGGGTCTTTCCTTTCCCGAGT
CCAGGTGTTCTTTCGGAAGTGAGTTTTCAGTGGTGGGTTTGCCATTCGTA
CATTTTATGGTCGTACATTTATGGTGATGGAGCCCCTCTGACCACTAGGC
TGTGTACTCGTTATTTCTTTTGTTCGCCGGCGACTGTCAACGAGTAAAGA
AAAAGAAGTATTAGTGCTGCGTGGCGATTCTAA
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protein sequence of jgi.p|Nanoce1779_2|589384

>mRNA_4515-protein ID=mRNA_4515-protein|Name=jgi.p|Nanoce1779_2|589384|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWD
PLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAG
DGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQ
PDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDP
VATLLHKLGN*
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mRNA from alignment at scaffold_10:787123..788340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4515 ID=mRNA_4515|Name=jgi.p|Nanoce1779_2|589384|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at scaffold_10:787123..788340+ (Nannochloropsis oceanica)
ACAGCAGCAGCACCACCACCACCACTTCTTAAGTATGAAGACCGCCGCTC
TCCTCACTGTCTCCACCCTTATGGGCGCCCAGGCCTTCATGGCCCCCGCC
CCCAAGTTCTCCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGACGA
GGCCGGCGTGACGGGCCCCTTGGGCTACTGGGTAAGTATTTCCCTCTCCC
TGTGAGAACAACGAGGGATTCGTTTACACAAAAGCTTCCCCCCCAACCCC
ACCCCTCTTTCTCCTGCCCCCACCACAGGACCCCCTTGGCTTCTCCGCCG
ACGGGGATGTCGAGAAGTTTAACAAGTACCGCGCCGCCGAGATCAAGCAC
GGCCGAGGTAAGCGTCTCGTACACCTTGAATAATGAATCTCCCTGTGGTG
TTTCCTCGGCCAGTCTGTTTCCCATGGTCCTCATCGAGAAACACATGTCT
TCTTTGTTTTCCTATCTCGTCTCTTCCTTCACCTCCCACACATTGGCATA
CCCCACTGACCCTTACCTTCCTCACCCTTCTCTTCCTTGTCACAGTTGCC
ATGCTTGCCATGCTCCACACCCTGGTGACCGGCCTTGGCGTGAAGCTGCC
GGGCCTCGTGGCCGCTGGCGACGGAATCCCCCAGTCCATGCCCTACGGCA
TTGGCGCTGTCACCTCCGGTGCTTGGGCCGCTCAGGGCTGGGCGCAGGTG
CTCCTGTTCGCGGCCGCCCTCGAGGTGCTTGCCCCCCAGAAGGAGGACAA
GATCCCCGGGGATGTGCAGCCCGACACCTCTGCCTTCGCCAAGCTGGACG
AGAAGTCCGAGGAGGAGGCACTGGCCTACCAGAACAAGGAGCTCAACAAC
GGCCGCTTGGCGATGGTCTCGTGGCTCGGAGCCGTCGTGGGCGCTAGCCT
CACCGGTGGCGAGGACCCCGTCGCCACCCTCCTCCACAAGCTCGGTAACT
AAGCCGCAGCCTTTCATCTGGAATCTGCTTTGGTCAGAATGTCTCGTGGG
AGAGGGTTTGGCCCTGGGTCTTTCCTTTCCCGAGTCCAGGTGTTCTTTCG
GAAGTGAGTTTTCAGTGGTGGGTTTGCCATTCGTACATTTTATGGTCGTA
CATTTATGGTGATGGAGCCCCTCTGACCACTAGGCTGTGTACTCGTTATT
TCTTTTGTTCGCCGGCGACTGTCAACGAGTAAAGAAAAAGAAGTATTAGT
GCTGCGTGGCGATTCTAA
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Coding sequence (CDS) from alignment at scaffold_10:787123..788340+

>mRNA_4515 ID=mRNA_4515|Name=jgi.p|Nanoce1779_2|589384|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_10:787123..788340+ (Nannochloropsis oceanica)
ATGAAGACCGCCGCTCTCCTCACTGTCTCCACCCTTATGGGCGCCCAGGC
CTTCATGGCCCCCGCCCCCAAGTTCTCCCGCACCCGCGGTGTTGCCCGCA
TGTCCTTCGAGGACGAGGCCGGCGTGACGGGCCCCTTGGGCTACTGGGAC
CCCCTTGGCTTCTCCGCCGACGGGGATGTCGAGAAGTTTAACAAGTACCG
CGCCGCCGAGATCAAGCACGGCCGAGTTGCCATGCTTGCCATGCTCCACA
CCCTGGTGACCGGCCTTGGCGTGAAGCTGCCGGGCCTCGTGGCCGCTGGC
GACGGAATCCCCCAGTCCATGCCCTACGGCATTGGCGCTGTCACCTCCGG
TGCTTGGGCCGCTCAGGGCTGGGCGCAGGTGCTCCTGTTCGCGGCCGCCC
TCGAGGTGCTTGCCCCCCAGAAGGAGGACAAGATCCCCGGGGATGTGCAG
CCCGACACCTCTGCCTTCGCCAAGCTGGACGAGAAGTCCGAGGAGGAGGC
ACTGGCCTACCAGAACAAGGAGCTCAACAACGGCCGCTTGGCGATGGTCT
CGTGGCTCGGAGCCGTCGTGGGCGCTAGCCTCACCGGTGGCGAGGACCCC
GTCGCCACCCTCCTCCACAAGCTCGGTAACTAAATGAAGACCGCCGCTCT
CCTCACTGTCTCCACCCTTATGGGCGCCCAGGCCTTCATGGCCCCCGCCC
CCAAGTTCTCCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGACGAG
GCCGGCGTGACGGGCCCCTTGGGCTACTGGGACCCCCTTGGCTTCTCCGC
CGACGGGGATGTCGAGAAGTTTAACAAGTACCGCGCCGCCGAGATCAAGC
ACGGCCGAGTTGCCATGCTTGCCATGCTCCACACCCTGGTGACCGGCCTT
GGCGTGAAGCTGCCGGGCCTCGTGGCCGCTGGCGACGGAATCCCCCAGTC
CATGCCCTACGGCATTGGCGCTGTCACCTCCGGTGCTTGGGCCGCTCAGG
GCTGGGCGCAGGTGCTCCTGTTCGCGGCCGCCCTCGAGGTGCTTGCCCCC
CAGAAGGAGGACAAGATCCCCGGGGATGTGCAGCCCGACACCTCTGCCTT
CGCCAAGCTGGACGAGAAGTCCGAGGAGGAGGCACTGGCCTACCAGAACA
AGGAGCTCAACAACGGCCGCTTGGCGATGGTCTCGTGGCTCGGAGCCGTC
GTGGGCGCTAGCCTCACCGGTGGCGAGGACCCCGTCGCCACCCTCCTCCA
CAAGCTCGGTAACTAAATGAAGACCGCCGCTCTCCTCACTGTCTCCACCC
TTATGGGCGCCCAGGCCTTCATGGCCCCCGCCCCCAAGTTCTCCCGCACC
CGCGGTGTTGCCCGCATGTCCTTCGAGGACGAGGCCGGCGTGACGGGCCC
CTTGGGCTACTGGGACCCCCTTGGCTTCTCCGCCGACGGGGATGTCGAGA
AGTTTAACAAGTACCGCGCCGCCGAGATCAAGCACGGCCGAGTTGCCATG
CTTGCCATGCTCCACACCCTGGTGACCGGCCTTGGCGTGAAGCTGCCGGG
CCTCGTGGCCGCTGGCGACGGAATCCCCCAGTCCATGCCCTACGGCATTG
GCGCTGTCACCTCCGGTGCTTGGGCCGCTCAGGGCTGGGCGCAGGTGCTC
CTGTTCGCGGCCGCCCTCGAGGTGCTTGCCCCCCAGAAGGAGGACAAGAT
CCCCGGGGATGTGCAGCCCGACACCTCTGCCTTCGCCAAGCTGGACGAGA
AGTCCGAGGAGGAGGCACTGGCCTACCAGAACAAGGAGCTCAACAACGGC
CGCTTGGCGATGGTCTCGTGGCTCGGAGCCGTCGTGGGCGCTAGCCTCAC
CGGTGGCGAGGACCCCGTCGCCACCCTCCTCCACAAGCTCGGTAACTAA
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Synonyms
Publications