jgi.p|Nanoce1779_2|555362, mRNA_4514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555362
Unique NamemRNA_4514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1059
Alignment locationscaffold_10:784681..786007 -

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Properties
Property NameValue
TranscriptId555448
TrackFilteredModels2
ProteinId555362
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:784681..786007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555362gene_4514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555362mRNA_4514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4514CDS_4514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4514 ID=mRNA_4514|Name=jgi.p|Nanoce1779_2|555362|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
TCTCAAGTATGAAGACCGCCGCTCTCCTCACTGTCTCTACCCTTATGGGC
GCCCAGGCCTTCATGGCCCCCGCCCCCAAGTTCTCCCGCACCCGCGGTGT
TGCCCGCATGTCCTTCGAGGACGAGGCGGGTGTGACGGGCCCCTTGGGCT
ACTGGGACCCCCTTGGCCTCTCCGCCGACGGGGATGTCGAGAAGTTTAAC
AAGTATCGCGCCGCCGAGATCAAGCACGGCCGAGTTGCCATGCTTGCCAT
GCTCCACACCCTGGTGACCGGCCTTGGCGTGAAGCTGCCGGGCCTCGTGG
CCGCTGGCGACGGAATCCCCCAGTCCATGCCCTACGGCATTGGCGCTGTC
ACCTCCGGTGCTTGGGCCGCTCAGGGCTGGGCGCAGGTGCTCCTGTTCGC
GGCCGCCCTCGAGGTGCTTGCCCCCCAGAAGGAGGACAAGATCCCCGGGG
ATGTGCAGCCCGACACCTCTGCCTTCGCCAAGCTGGACGAGAAGTCCGAG
GAGGAGGCACTGGCCTACCAGAACAAGGAGCTCAACAACGGCCGCTTGGC
GATGGTCTCGTGGCTCGGAGCCGTCGTGGGCGCTAGCCTCACCGGTGGCG
AGGACCCCGTCGCCACCCTCCTCCACAAGCTCGGTAACTAAGCCGCAGCC
TCTTGGGTGAAGTGTTTTTACCCCCCTTCTCCTTCACCCCCGCATTCAGA
TGTGCAGCGTAACCATACCTGCTATACATACCTTGCATCATCTAGAATAA
CTAGAAGGTCAACGACAATATCTTAAAACTGAGATTTTGAACGAAAGAGA
CTTAACAAACAGTAGGAAATAGGAAGTAATATGGAAGGGATACAGCTAGT
AGCAAATGATTGAGTCTAAGTCCTGTCGTTTGGTTCGTGCCCGCCCCTCG
TTTACATCAAGAAATGAAATTCTCGTCAGACAGCAGGAGGGAGAACATTC
ACCGTTAAAAGCGTGTAGCCTTTCCAGAGATAGAGATGGAAAAGCAAGCG
ACCTATCAGCCGATGAAATAATTTAAAAAGAAAAGAAAGAAAAGGTAACG
AGGATTCAA
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protein sequence of jgi.p|Nanoce1779_2|555362

>mRNA_4514-protein ID=mRNA_4514-protein|Name=jgi.p|Nanoce1779_2|555362|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWD
PLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAG
DGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQ
PDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDP
VATLLHKLGN*
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mRNA from alignment at scaffold_10:784681..786007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4514 ID=mRNA_4514|Name=jgi.p|Nanoce1779_2|555362|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp|location=Sequence derived from alignment at scaffold_10:784681..786007- (Nannochloropsis oceanica)
TCTCAAGTATGAAGACCGCCGCTCTCCTCACTGTCTCTACCCTTATGGGC
GCCCAGGCCTTCATGGCCCCCGCCCCCAAGTTCTCCCGCACCCGCGGTGT
TGCCCGCATGTCCTTCGAGGACGAGGCGGGTGTGACGGGCCCCTTGGGCT
ACTGGGTAAGTAGCTCCTCCCTCCTATATCGATTTCCCTCCCTGCCCGAC
TCTTACCCCCCCATTGCCGCCTCCTTAAAAAACAGGACCCCCTTGGCCTC
TCCGCCGACGGGGATGTCGAGAAGTTTAACAAGTATCGCGCCGCCGAGAT
CAAGCACGGCCGAGGTAAGCGTCTTGTACACCTTGTATAATGAATCTCCC
TGTGATGTTTCCTCGGCCAGTCTGTTTCCCATGGTCCTCATCGAGAAACA
CATGTCTTCTTTGTTTTCCTATCTCGTCTCTTCCTTCACCTCCCACACAT
TGGCATACCCCACTGACCCTTACCTTCCTCACCCTTCTCTTCCTTGTCAC
AGTTGCCATGCTTGCCATGCTCCACACCCTGGTGACCGGCCTTGGCGTGA
AGCTGCCGGGCCTCGTGGCCGCTGGCGACGGAATCCCCCAGTCCATGCCC
TACGGCATTGGCGCTGTCACCTCCGGTGCTTGGGCCGCTCAGGGCTGGGC
GCAGGTGCTCCTGTTCGCGGCCGCCCTCGAGGTGCTTGCCCCCCAGAAGG
AGGACAAGATCCCCGGGGATGTGCAGCCCGACACCTCTGCCTTCGCCAAG
CTGGACGAGAAGTCCGAGGAGGAGGCACTGGCCTACCAGAACAAGGAGCT
CAACAACGGCCGCTTGGCGATGGTCTCGTGGCTCGGAGCCGTCGTGGGCG
CTAGCCTCACCGGTGGCGAGGACCCCGTCGCCACCCTCCTCCACAAGCTC
GGTAACTAAGCCGCAGCCTCTTGGGTGAAGTGTTTTTACCCCCCTTCTCC
TTCACCCCCGCATTCAGATGTGCAGCGTAACCATACCTGCTATACATACC
TTGCATCATCTAGAATAACTAGAAGGTCAACGACAATATCTTAAAACTGA
GATTTTGAACGAAAGAGACTTAACAAACAGTAGGAAATAGGAAGTAATAT
GGAAGGGATACAGCTAGTAGCAAATGATTGAGTCTAAGTCCTGTCGTTTG
GTTCGTGCCCGCCCCTCGTTTACATCAAGAAATGAAATTCTCGTCAGACA
GCAGGAGGGAGAACATTCACCGTTAAAAGCGTGTAGCCTTTCCAGAGATA
GAGATGGAAAAGCAAGCGACCTATCAGCCGATGAAATAATTTAAAAAGAA
AAGAAAGAAAAGGTAACGAGGATTCAA
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Coding sequence (CDS) from alignment at scaffold_10:784681..786007-

>mRNA_4514 ID=mRNA_4514|Name=jgi.p|Nanoce1779_2|555362|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_10:784681..786007- (Nannochloropsis oceanica)
TTGCCATGCTTGCCATGCTCCACACCCTGGTGACCGGCCTTGGCGTGAAG
CTGCCGGGCCTCGTGGCCGCTGGCGACGGAATCCCCCAGTCCATGCCCTA
CGGCATTGGCGCTGTCACCTCCGGTGCTTGGGCCGCTCAGGGCTGGGCGC
AGGTGCTCCTGTTCGCGGCCGCCCTCGAGGTGCTTGCCCCCCAGAAGGAG
GACAAGATCCCCGGGGATGTGCAGCCCGACACCTCTGCCTTCGCCAAGCT
GGACGAGAAGTCCGAGGAGGAGGCACTGGCCTACCAGAACAAGGAGCTCA
ACAACGGCCGCTTGGCGATGGTCTCGTGGCTCGGAGCCGTCGTGGGCGCT
AGCCTCACCGGTGGCGAGGACCCCGTCGCCACCCTCCTCCACAAGCTCGG
TAACTAAGACCCCCTTGGCCTCTCCGCCGACGGGGATGTCGAGAAGTTTA
ACAAGTATCGCGCCGCCGAGATCAAGCACGGCCGAGATGAAGACCGCCGC
TCTCCTCACTGTCTCTACCCTTATGGGCGCCCAGGCCTTCATGGCCCCCG
CCCCCAAGTTCTCCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGAC
GAGGCGGGTGTGACGGGCCCCTTGGGCTACTGGTTGCCATGCTTGCCATG
CTCCACACCCTGGTGACCGGCCTTGGCGTGAAGCTGCCGGGCCTCGTGGC
CGCTGGCGACGGAATCCCCCAGTCCATGCCCTACGGCATTGGCGCTGTCA
CCTCCGGTGCTTGGGCCGCTCAGGGCTGGGCGCAGGTGCTCCTGTTCGCG
GCCGCCCTCGAGGTGCTTGCCCCCCAGAAGGAGGACAAGATCCCCGGGGA
TGTGCAGCCCGACACCTCTGCCTTCGCCAAGCTGGACGAGAAGTCCGAGG
AGGAGGCACTGGCCTACCAGAACAAGGAGCTCAACAACGGCCGCTTGGCG
ATGGTCTCGTGGCTCGGAGCCGTCGTGGGCGCTAGCCTCACCGGTGGCGA
GGACCCCGTCGCCACCCTCCTCCACAAGCTCGGTAACTAAGACCCCCTTG
GCCTCTCCGCCGACGGGGATGTCGAGAAGTTTAACAAGTATCGCGCCGCC
GAGATCAAGCACGGCCGAGATGAAGACCGCCGCTCTCCTCACTGTCTCTA
CCCTTATGGGCGCCCAGGCCTTCATGGCCCCCGCCCCCAAGTTCTCCCGC
ACCCGCGGTGTTGCCCGCATGTCCTTCGAGGACGAGGCGGGTGTGACGGG
CCCCTTGGGCTACTGGTTGCCATGCTTGCCATGCTCCACACCCTGGTGAC
CGGCCTTGGCGTGAAGCTGCCGGGCCTCGTGGCCGCTGGCGACGGAATCC
CCCAGTCCATGCCCTACGGCATTGGCGCTGTCACCTCCGGTGCTTGGGCC
GCTCAGGGCTGGGCGCAGGTGCTCCTGTTCGCGGCCGCCCTCGAGGTGCT
TGCCCCCCAGAAGGAGGACAAGATCCCCGGGGATGTGCAGCCCGACACCT
CTGCCTTCGCCAAGCTGGACGAGAAGTCCGAGGAGGAGGCACTGGCCTAC
CAGAACAAGGAGCTCAACAACGGCCGCTTGGCGATGGTCTCGTGGCTCGG
AGCCGTCGTGGGCGCTAGCCTCACCGGTGGCGAGGACCCCGTCGCCACCC
TCCTCCACAAGCTCGGTAACTAAGACCCCCTTGGCCTCTCCGCCGACGGG
GATGTCGAGAAGTTTAACAAGTATCGCGCCGCCGAGATCAAGCACGGCCG
AGATGAAGACCGCCGCTCTCCTCACTGTCTCTACCCTTATGGGCGCCCAG
GCCTTCATGGCCCCCGCCCCCAAGTTCTCCCGCACCCGCGGTGTTGCCCG
CATGTCCTTCGAGGACGAGGCGGGTGTGACGGGCCCCTTGGGCTACTGG
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Synonyms
Publications